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NASA NTRSDate not supplied

Congruence of Clusters Defined By Whole Genome Sequencing and MALDI-TOF for Bacteria Isolated From Cleanrooms

Introduction: Oligotrophic conditions can render cleanrooms inhospitable to microbes. Despite these constraints, fungi and bacteria are frequently isolated from surfaces in astromaterials cleanrooms at the Johnson Space Center. Bacillus species are of particular concern because endospores belonging to this genus are resilient and can affect astromaterials. Current monitoring programs rely on 16S rRNA sequencing and the VITEK2 Compact system. These methods have limited power to resolve Bacillus species. Matrix-assisted laser desorption - time of flight mass spectrometry (MALDI-TOF MS), provides a rapid, low cost, method of identifying bacterial isolates and has a higher resolution than 16S rRNA sequencing, particularly for Bacillus species; however, few studies have compared this method to the industry gold standard, whole genome sequencing (WGS). Methods: Based on 16S rRNA classification, we selected 14 isolates for analysis with MALDI-TOF and WGS. Mass spectra were generated with MALDI-TOF MS and processed with custom scripts to identify clusters of closely related isolates and calculate a matrix of pairwise cosine similarity scores. Hybrid Illumina and Nanopore sequencing were used to generate draft genomes. Pairwise similarity scores were calculated from these genomes based on the average amino acid identity (AAI) predicted from single copy core genes. Congruence of clustering between these methods, was assessed by calculating adjusted Rand and Wallace coefficients. Results: Clusters of species generated from MALDI-TOF MS showed good agreement of phylotypes generated with WGS. Pairs of strains that were > 94% similar to each other in terms of predicted amino acid sequences consistently showed cosine similarities of mass spectra > 0.65 and, of the 9 clusters identified with WGS, 8 were identical with MALDI-TOF. This corresponds to an adjusted Rand index of 0.95 and a 95% confidence interval of 0.80 – 1.00 for adjusted Wallace coefficients. The only discordance was for a pair of isolates that were classified as Paenibacillus species. This pair showed relatively high similarity (0.84) in terms of MALDI-TOF MS but only 85% similarity in terms of AAI. Conclusion: This study shows that MALDI-TOF and WGS exhibit a similar ability to delineate Bacillus species isolated from cleanrooms and taxonomic units described by these two methods are consistent with one another. Since MALDI-TOF MS is low in cost and high in throughput, this approach appears to be an ideal option for routine microbial monitoring and identifying Bacillus species.

Farnaz Mazhari↗

NASA NTRS2008

Recent Improvements to the Calibration Models for RXTE/PCA

We are updating the calibration of the PCA to correct for slow variations, primarily in energy to channel relationship. We have also improved the physical model in the vicinity of the Xe K-edge, which should increase the reliability of continuum fits above 20 keV. The improvements to the matrix are especially important to simultaneous observations, where the PCA is often used to constrain the continuum while other higher resolution spectrometers are used to study the shape of lines and edges associated with Iron.

Jahoda, K.↗

NASA NTRS1990

Iosipescu shear characterization of polymeric and metal matrix composites

The paper outlines the results of an experimental/analytical investigation of deformation and stress fields in the test section of graphite/epoxy and boron/aluminum Iosipescu specimens using high-resolution moire interferometry and finite-element analysis. Very good correlation between experiment and analysis is demonstrated for the graphite/epoxy specimens. This, in turn, justifies the use of correction factors employed in the previous investigations to eliminate differences in the initial shear moduli obtained from 0-deg and 90-deg Iosipescu specimens. The significant discrepancies observed in the case of boron/aluminum specimens are attributed to localized yielding at the notch tips caused by the clamping action, the associated in-plane bending effects and changing boundary conditions due to slippage in the grips.

Pindera, M.-J.↗

NASA NTRS1977

Transient excitation and mechanical admittance test techniques for prediction of payload vibration environments

Transient excitation forces were applied separately to simple beam-and-mass launch vehicle and payload models to develop complex admittance functions for the interface and other appropriate points on the structures. These measured admittances were then analytically combined by a matrix representation to obtain a description of the coupled system dynamic characteristics. Response of the payload model to excitation of the launch vehicle model was predicted and compared with results measured on the combined models. These results are also compared with results of earlier work in which a similar procedure was employed except that steady-state sinusoidal excitation techniques were included. It is found that the method employing transient tests produces results that are better overall than the steady state methods. Furthermore, the transient method requires far less time to implement, and provides far better resolution in the data. However, the data acquisition and handling problem is more complex for this method. It is concluded that the transient test and admittance matrix prediction method can be a valuable tool for development of payload vibration tests.

Kana, D. D.↗

NASA NTRS1972

The inversion of VLF-LF sounder data to obtain D-region electron-density distributions

The direct problem is to compute reflection coefficients for an assumed electron-density profile, using a full-wave solution. The inverse problem is treated numerically, using derivatives of the reflection matrix with respect to model parameters. A technique for the rapid computation of the derivatives is described. An algorithm for determining resolution in the profile is discussed.

Shellman, C. H.↗

NASA NTRS1984

Imaging X-ray spectrometer

An X-ray spectrometer for providing imaging and energy resolution of an X-ray source is described. This spectrometer is comprised of a thick silicon wafer having an embedded matrix or grid of aluminum completely through the wafer fabricated, for example, by thermal migration. The aluminum matrix defines the walls of a rectangular array of silicon X-ray detector cells or pixels. A thermally diffused aluminum electrode is also formed centrally through each of the silicon cells with biasing means being connected to the aluminum cell walls and causes lateral charge carrier depletion between the cell walls so that incident X-ray energy causes a photoelectric reaction within the silicon producing collectible charge carriers in the form of electrons which are collected and used for imaging.

Grant, P. A.↗

NASA NTRS1988

High-spatial resolution and high-spectral resolution detector for use in the measurement of solar flare hard X-rays

In the areas of high spatial resolution, the evaluation of a hard X-ray detector with 65 micron spatial resolution for operation in the energy range from 30 to 400 keV is proposed. The basic detector is a thick large-area scintillator faceplate, composed of a matrix of high-density scintillating glass fibers, attached to a proximity type image intensifier tube with a resistive-anode digital readout system. Such a detector, combined with a coded-aperture mask, would be ideal for use as a modest-sized hard X-ray imaging instrument up to X-ray energies as high as several hundred keV. As an integral part of this study it was also proposed that several techniques be critically evaluated for X-ray image coding which could be used with this detector. In the area of high spectral resolution, it is proposed to evaluate two different types of detectors for use as X-ray spectrometers for solar flares: planar silicon detectors and high-purity germanium detectors (HPGe). Instruments utilizing these high-spatial-resolution detectors for hard X-ray imaging measurements from 30 to 400 keV and high-spectral-resolution detectors for measurements over a similar energy range would be ideally suited for making crucial solar flare observations during the upcoming maximum in the solar cycle.

Desai, U. D.↗

NASA NTRS1983

CO 1-0 band isotopic lines as intensity standards

Fundamental band vibration-rotational line intensities are reported for the (C-12)(O-16), (C-13)(O-16), and (C-12)(O-18) molecules. The intensities were computed using numerically obtained matrix elements of a recently, determined electric dipole moment function. New intensity measurements for some of these lines obtained via high-resolution Fourier spectra are also reported. The overall consistency (approximately 2.2 percent) between calculations, which are based on recent experimental determinations of CO 1-0 band intensities, not including our own, those of the authors, and independent experimental results of the authors suggests that the lines of the fundamental band of CO can be used as absolute intensity standards.

Chackerian, C., Jr.↗

NASA NTRS2007

NASA Tech Briefs, January 2007

Topics covered include: Flexible Skins Containing Integrated Sensors and Circuitry; Artificial Hair Cells for Sensing Flows; Video Guidance Sensor and Time-of-Flight Rangefinder; Optical Beam-Shear Sensors; Multiple-Agent Air/Ground Autonomous Exploration Systems; A 640 512-Pixel Portable Long-Wavelength Infrared Camera; An Array of Optical Receivers for Deep-Space Communications; Microstrip Antenna Arrays on Multilayer LCP Substrates; Applications for Subvocal Speech; Multiloop Rapid-Rise/Rapid Fall High-Voltage Power Supply; The PICWidget; Fusing Symbolic and Numerical Diagnostic Computations; Probabilistic Reasoning for Robustness in Automated Planning; Short-Term Forecasting of Radiation Belt and Ring Current; JMS Proxy and C/C++ Client SDK; XML Flight/Ground Data Dictionary Management; Cross-Compiler for Modeling Space-Flight Systems; Composite Elastic Skins for Shape-Changing Structures; Glass/Ceramic Composites for Sealing Solid Oxide Fuel Cells; Aligning Optical Fibers by Means of Actuated MEMS Wedges; Manufacturing Large Membrane Mirrors at Low Cost; Double-Vacuum-Bag Process for Making Resin- Matrix Composites; Surface Bacterial-Spore Assay Using Tb3+/DPA Luminescence; Simplified Microarray Technique for Identifying mRNA in Rare Samples; High-Resolution, Wide-Field-of-View Scanning Telescope; Multispectral Imager With Improved Filter Wheel and Optics; Integral Radiator and Storage Tank; Compensation for Phase Anisotropy of a Metal Reflector; Optical Characterization of Molecular Contaminant Films; Integrated Hardware and Software for No-Loss Computing; Decision-Tree Formulation With Order-1 Lateral Execution; GIS Methodology for Planning Planetary-Rover Operations; Optimal Calibration of the Spitzer Space Telescope; Automated Detection of Events of Scientific Interest; Representation-Independent Iteration of Sparse Data Arrays; Mission Operations of the Mars Exploration Rovers; and More About Software for No-Loss Computing.

Source record↗

NASA NTRSDate not supplied

Use of Spectral Analysis of Singular Values as a Test Metric for IMMAT Trials

One of many challenges in the implementation of multiple exciter testing is establishing a reasonable set of test metrics to measure the quality of testing. This is especially true in the application of Impedance Matched Multi-Axis Testing; in that it is possible to have very large spectral density matrices that serve as reference criteria. While there exist plotting schemes to view a spectral density matrix, it is often necessary to break the overlay of reference and test results into subsections of the matrices to get sufficient resolution to interpret the data. In addition, as one attempts to control multiple locations on a structure, implementation of classical single degree-of freedom test tolerances across all channels and associated cross spectra is simply not feasible. Hence it is challenging to evaluate overall test quality. The use of spectral views of the dominant singular values from the singular value decomposition of the spectral density matrices and metrics based upon them is proposed for establishing a set of compact metrics for evaluating test quality. A laboratory experiment will be included to demonstrate this proposed technique.

Impedance Matched Multi-Axis Testing↗

NASA NTRSDate not supplied

Use of Spectral Analysis of Singular Values as a Test Metric for Impedance Matched Multi-Axis Test Trials

Vibration Testing↗

NASA NTRS1977

Extending radiative transfer models by use of Bayes rule

This paper presents a procedure that extends some existing radiative transfer modeling techniques to problems in atmospheric science where curvature and layering of the medium and dynamic range and angular resolution of the signal are important. Example problems include twilight and limb scan simulations. Techniques that are extended include successive orders of scattering, matrix operator, doubling, Gauss-Seidel iteration, discrete ordinates and spherical harmonics. The procedure for extending them is based on Bayes' rule from probability theory.

Whitney, C.↗

NASA NTRS1983

The Influence of Sensor and Flight Parameters on Texture in Radar Images

Texture is known to be important in the analysis of radar images for geologic applications. It was previously shown that texture features derived from the grey-level co-occurrence matrix (GLCM) can be used to separate large scale texture in radar images. The influence of sensor parameters, specifically the spatial and radiometric resolution and flight parameters, i.e., the orientation of the surface structure relative to the sensor, on the ability to classify texture based on the GLCM features is investigated. It was found that changing these sensor and flight parameters greatly affects the usefulness of the GLCM for classifying texture on radar images.

Frost, V. S.↗

NASA NTRS1995

X-ray transmission microscope development

We are developing a hard x-ray microscope for direct observation of solidification dynamics in metal alloys and metal matrix composites. The Fein-Focus Inc. x-ray source was delivered in September and found to perform better than expected. Confirmed resolution of better than 2 micrometers was obtained and magnifications up to 800X were measured. Nickel beads of 30 micrometer diameter were easily detected through 6mm of aluminum. X-ray metallography was performed on several specimens showing high resolution and clear definition of 3-dimensional structures. Prototype furnace installed and tested.

Kaukler, William F.↗

NASA NTRS1994

The complex optical to soft x-ray spectrum of the low-redshift radio-quiet quasars

Eight high signal-to-noise ROSAT Position Sensitive Proportional Counter (PSPC) observations of six low-redshift (o.048 less than z less than 0.155) radio-quiet quasars have been analyzed to study ant soft excess. All the spectra can, at least roughly, be described int eh 0.1-2.5 keV band by simple power laws reduced at low energies by Galactic absorption. The strong oxygen edges seen in the PSPC spectra of several Seyfert galaxies and quasars are not observed in this sample. The limits implied for the abount of absorbing gas intrinsic to the quasars are particularly tight: of the order of approximately 10(exp 20)/sq cm. THe range of energy indices is broad: 1.3 less than alpha(sub E) less than 2.3. The energy indices are systematically steeper than those found in the same sources at higher energies (by DELTA alpha(sub E) approximately 0.5-1 with respect to Ginga or EXOSAT (2-10 keV) measurements, and by DELTA alpha(sub E) approximately 0.5 with respect to IPC (0.2-3.5 keV) measurements). This suggests a break between the hard and soft components in the keV region and, therefore, that the PSPC spectra are strongly dominated by the soft compnents. In fact, a fit tot he composite, high signal-to-noise spectrum reveals a significant excess above approximately 1 keV withrespect to the simple power-law model. No evidence for strong emission lines is found in any of the quasars. This argues against emission from an ionized plasma as the main contributor to the soft X-ray compnentunless there is a distribution of te mperatures. If the soft X-ray spectrum of thee quasars is dominated by radiation reflected by the photoinonized surface of an accretion disk, the absence of strong emissionlines suggests high ionization parameters and therefore high accretion rates. We include in two Appendices a comarison of the two official PSPC resolution matrices, those released on1992 March and on 1993 January, a discussion of the amplitude of the residual systematic uncertainties in 1993 January matrix, and a compaison between the PSPC and IPC spectra of a sample of sources.

Fiore, Fabrizio↗

NASA NTRS2016

AR-40 AR-39 Age of an Impact-Melt Lithology in DHOFAR 961

The South Pole-Aitken (SPA) basin is the stratigraphically oldest identifiable lunar basin and is therefore one of the most important targets for absolute age-dating to help understand whether ancient lunar bombardment history smoothly declined or was punctuated by a cataclysm. The SPA basin also has another convenient property, a geochemically distinct interior, unobscured by extensive mare basalt fill. A case has been made for the possible origin of the Dhofar 961 lunar meteorite in the South Pole-Aitken (SPA) basin, based on comparing its composition with Lunar Prospector gamma-ray data for the interior of the SPA basin. Dhofar 961 contains several different impact-melt (IM) lithologies. Jolliff et al. described two classes of mafic impact-melt lithologies, one dominated by olivine (Lithology A) and the other by plagioclase (An 95-96.5) (Lithology B). Broad-beam analyses of these lithologies yielded (is) approximately 14.0 wt% FeO, 11.7 wt% MgO, and 15.4 wt% Al2O3. Lithologies A and B differ by approximately 2.5% Al2O3, 1.5% FeO and 1.5% MgO, consistent with the occurrence of olivine phenocrysts in A and plagioclase clasts in B. Both lithologies are considerably more mafic than the Apollo mafic impact-melt breccias, corresponding to olivine gabbronorite. Joy et al. used U-Pb dating to investigate phosphate fragments in the Dhofar 961 matrix and impact-melt clasts. Matrix phosphates have 4.34 to 4 Ga ages, consistent with ancient KREEP-driven magmatic episodes and Pre-Nectarian ((is) greater than 3.92 Ga). Phosphates found within Dhofar 961 crystalline impact melt breccia clasts range from 4.26 to 3.89 Ga, potentially recording events throughout the basin forming epoch of lunar history. The youngest reset ages in the Dhofar 961 sample represent an upper limit for the time of formation of the meteorite. Joy et al suggested this age represents the final impact that mixed and consolidated several generations of precursor rocks into the Dhofar meteorite group, although they note that further age dating of all the stones is required to test this hypothesis. We received a split of Dhofar 961 from R. Zeigler consisting of a large clast of IM Lithology B, with some light-colored, friable matrix clinging to the external margins of the impact-melt clast. This lithology was not present in the samples investigated by Joy et al. and thus does not have corresponding U-Pb ages on it. We created multiple subsplits of both the IM and matrix lithologies, each weighing several tens of micrograms. We conducted Ar-40 Ar-39 dating of this candidate SPA material by high-resolution step heating and comparing it with the regolith that surrounds it.

Lithology↗

NASA NTRSDate not supplied

Effects of Spatial Resolution on Retropropulsion Aerodynamics in an Atmospheric Environment

Development of a powered descent capability for atmospheric environments is heavily reliant on computational simulation. The prohibitive computational cost of such simulations motivates an improvement in the understanding of the minimum computational fidelity re-quired to accurately characterize aerodynamic-propulsive interference for such applications. This work examines the applicability of detached eddy simulation methods for retropropulsion in atmospheric environments through utilization of a GPU-accelerated computational framework, yielding data that are largely unachievable with conventional high-performance computing resources. This effort was specifically designed to quantitatively assess the effects of spatial resolution on vehicle aerodynamics for nominal operation of a low lift-to-drag ratio, human-scale Mars lander concept. The test matrix and scaling approach span relevant nozzle expansion conditions as well as mid-supersonic to high-subsonic operating conditions. Solutions were generated using computational grids ranging from 143 million to 1.14 billion grid points (degrees of freedom). This paper will provide an overview of the computational campaign, approach, and discussion of preliminary results focused on a range of operating conditions for a conceptual low lift-to-drag, human-scale Mars lander.

Ashley M Korzun↗

NASA NTRS2015

Fe and O EELS Studies of Ion Irradiated Murchison CM2 Carbonaceous Chondrite Matrix

Introduction: The physical and chemical response of hydrated carbonaceous chondrite materials to space weathering processes is poorly understood. Improving this understanding is a key part of establishing how regoliths on primitive carbonaceous asteroids respond to space weathering processes, knowledge that supports future sample return missions (Hayabusa 2 and OSIRISREx) that are targeting objects of this type. We previously reported on He+ irradiation of Murchison matrix and showed that the irradiation resulted in amorphization of the matrix phyllosilicates, loss of OH, and surface vesiculation. Here, we report electron energy-loss spectroscopy (EELS) measurements of the irradiated material with emphasis on the Fe and O speciation. Sample and Methods: A polished thin section of the Murchison CM2 carbonaceous chondrite was irradiated with 4 kilovolts He(+) (normal incidence) to a total dose of 1 x 10(exp 18) He(+) per square centimeter. We extracted thin sections from both irradiated and unirradiated regions in matrix using focused ion beam (FIB) techniques with electron beam deposition for the protective carbon strap to minimize surface damage artifacts from the FIB milling. The FIB sections were analyzed using a JEOL 2500SE scanning and transmission electron microscope (STEM) equipped with a Gatan Tridiem imaging filter. EELS spectra were collected from 50 nanometer diameter regions with an energy resolution of 0.7 electronvolts FWHM at the zero loss. EELS spectra were collected at low electron doses to minimize possible artifacts from electron-beam irradiation damage. Results and Discussion: Fe L (sub 2,3) EELS spectra from matrix phyllosilicates in CM chondrites show mixed Fe(2+)/Fe(3+) oxidation states with Fe(3+)/Sigma Fe approximately 0.5. Fe L(sub 2,3) spectra from the irradiated/ amorphized matrix phyllosilicates show higher Fe(2+)/Fe(3+) ratios compared to spectra obtained from pristine material at depths beyond the implantation/amorphization layer. We also obtained O Ka spectra from phyllosilicates in both regions of the sample. The O Ka spectra show a pre-edge feature at approximately 530.5 electronvolts that is related to O 2p states hybridized with Fe 3d states. The intensity ratio of the O Ka pre-edge peak relative to the main part of the O Ka edge (that results from transitions of O 1s to 2p states) is lower in the irradiated layer compared to the pristine material and may reflect the loss of O (as OH) as was observed by IR spectroscopy. Conclusions: In addition to amorphization and OH loss, EELS spectra of He(+) irradiated matrix phyllosilicates in Murchison show that some of the Fe(3+) is reduced to Fe(2+). Spectral deconvolution is underway to extract quantitative ratios from the EELS spectra.

Keller, L. P.↗