Structure-Based Design of Potent Iminosugar Inhibitors of Endoplasmic Reticulum α-Glucosidase I with Anti-SARS-CoV-2 Activity
Not provided.
SEARCH · Search NASA
Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.
Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.
Not provided.
Not provided.
Not provided.
Abstract not provided
Biocatalysis is an attractive methodology due to its sustainable metrics, combined with its vaunted regio-, chemo-, and stereoselectivity. Among biocatalysts, oxidoreductases catalyze redox transformations on a wide variety of substrates and are thus particularly attractive for synthetic applications. Many oxidoreductases depend on nicotinamide-based cofactors; however, the high cost and poor atom economy of such cofactors can negate the advantage of biosynthetic processes. The native cofactors (i.e., NADH or NADPH) can be replaced by nicotinamide cofactor biomimetics (NCBs) to address these issues. Additionally, NCBs can enhance enzyme activity due to structures with expanded redox properties. These capabilities open possibilities for reactivity and biorthogonality. Thus, the field has responded with new NCB structures, including variation in their electronic and molecular recognition properties. This perspective focuses on structure-activity relationships of simple NCBs, including their function, stability, and other properties, along with methods for their regeneration in biosynthesis.
Abstract not provided
Not provided.
Explore the source record for details and available documents.
Explore the source record for details and available documents.
Despite much effort, antibody therapies for Alzheimer’s disease (AD) have shown limited efficacy. Challenges to the rational design of effective antibodies include the difficulty of achieving specific affinity to critical targets, poor expression, and antibody aggregation caused by buried charges and unstructured loops. To overcome these challenges, we grafted previously determined sequences of fibril-capping amyloid inhibitors onto a camel heavy chain antibody scaffold. These sequences were designed to cap fibrils of tau, known to form the neurofibrillary tangles of AD, thereby preventing fibril elongation. The nanobodies grafted with capping inhibitors blocked tau aggregation in biosensor cells seeded with postmortem brain extracts from AD and progressive supranuclear palsy (PSP) patients. The tau capping nanobody inhibitors also blocked seeding by recombinant tau oligomers. Another challenge to the design of effective antibodies is their poor blood–brain barrier (BBB) penetration. In this study, we also designed a bispecific nanobody composed of a nanobody that targets a receptor on the BBB and a tau capping nanobody inhibitor, conjoined by a flexible linker. We provide evidence that the bispecific nanobody improved BBB penetration over the tau capping inhibitor alone after intravenous administration in mice. Our results suggest that the design of synthetic antibodies that target sequences that drive protein aggregation may be a promising approach to inhibit the prion-like seeding of tau and other proteins involved in AD and related proteinopathies.
The 1,4-dihydropyridines, drugs with well-established bioavailability and toxicity profiles, have proven efficacy in treating human hypertension, peripheral vascular disorders, and coronary artery disease. Every 1,4-dihydropyridine in clinical use blocks L-type voltage-gated calcium channels. We now report our development, using selective optimization of a side activity (SOSA), of a class of 1,4-dihydropyridines that selectively and potently inhibit the intermediate-conductance calcium-activated K + channel K Ca 3.1, a validated therapeutic target for diseases affecting many organ systems. One of these 1,4-dihydropyridines, DHP-103, blocked K Ca 3.1 with an IC 50 of 6 nM and exhibited exquisite selectivity over calcium channels and a panel of >100 additional molecular targets. Using high-resolution structure determination by cryogenic electron microscopy together with mutagenesis and electrophysiology, we delineated the drug binding pocket for DHP-103 within the water-filled central cavity of the K Ca 3.1 channel pore, where bound drug directly impedes ion permeation. DHP-103 inhibited gain-of-function mutant K Ca 3.1 channels that cause hereditary xerocytosis, suggesting its potential use as a therapeutic for this hemolytic anemia. In a rat model of acute ischemic stroke, the second leading cause of death worldwide, DHP-103 administered 12 h postischemic insult in proof-of-concept studies reduced infarct volume, improved balance beam performance (measure of proprioception) and decreased numbers of activated microglia in infarcted areas. K Ca 3.1-selective 1,4-dihydropyridines hold promise for the many diseases for which K Ca 3.1 has been experimentally confirmed as a therapeutic target.
Explore the source record for details and available documents.
In conventional linear accelerators, the beam is accelerated with a synchronous harmonic of the radio frequency field where the electric field component is collinear with the beam direction. This approach requires the design of complex accelerating structures, especially for low-energy heavy ions. If the beam motion were sustainably coupled to transverse electromagnetic fields, this could significantly simplify the accelerating structure design, and even allow acceleration with free-space waves. However, despite the long history of the proposed concept for accelerating low-velocity ion beams, it has not found practical application, partially because of the complexity of the technical design. In this paper, we present a practical design approach for this undulator-based accelerator for low-energy heavy-ions, reminiscent of the inverse free electron laser operating principle, but in a different parameter space.
Low-temperature electrochemical ammonia synthesis with heterogeneous catalysts suffers from extremely low Faradaic efficiencies (< 1%). The hydrogen evolution reaction (HER) is predicted and experimentally demonstrated to outcompete the nitrogen reduction reaction (N2RR). Meanwhile, the nitrogenase enzymes found in nature enable selective N2RR at Fe/Mo metal centers. Montoya and co-authors suggest that a successful transition metal N2RR catalyst will deviate from or completely circumvent current linear scaling relationships. We propose an approach where short-chain peptides (3-20 amino acids) will be used to control the local surface environment of catalysts. This peptide-based design strategy will be used to overcome HER selectivity and the limitations of *NxHy adsorbate scaling.
This report surveys current creep-fatigue design and fitness-for-service assessment procedures, with a particular focus on environmental effects and creep-fatigue cracking near weldments. Included in this assessment are the American Society of Mechanical Engineers Boiler and Pressure Vessel Code Section III, Division 5, the British R5 standard, the French RCC-MRx design code, the ITER Structural Design Criteria, and the API-579/ASME FFS-1 fitness-for-service rules for petrochemical components. The focus of this review is to identify gaps in the available methods that could prevent regulators from evaluating future high temperature reactor designs. The report makes recommendations, where appropriate, on actions that could be taken to fill these gaps by either providing adequate assessment procedures for creep-fatigue damage in harsh environments or by evaluating strategies vendors could use to mitigate regulatory concerns with creep-fatigue damage in high temperature reactor components.
Lattices remain an attractive class of structures due to their design versatility; however, rapidly designing lattice structures with tailored or optimal mechanical properties remains a significant challenge. With each added design variable, the design space quickly becomes intractable. To address this challenge, research efforts have sought to combine computational approaches with machine learning (ML)-based approaches to reduce the computational cost of the design process and accelerate mechanical design. While these efforts have made substantial progress, significant challenges remain in (1) building and interpreting the ML-based surrogate models and (2) iteratively and efficiently curating training datasets for optimization tasks. Here, we address the first challenge by combining ML-based surrogate modeling and Shapley additive explanation (SHAP) analysis to interpret the impact of each design variable. We find that our ML-based surrogate models achieve excellent prediction capabilities (R 2 > 0.95) and SHAP values aid in uncovering design variables influencing performance. We address the second challenge by utilizing active learning-based methods, such as Bayesian optimization, to explore the design space and report a 5 × reduction in simulations relative to grid-based search. Collectively, these results underscore the value of building intelligent design systems that leverage ML-based methods for uncovering key design variables and accelerating design.
Wind loading is a main contributor to structural design costs of Concentrating Solar Power (CSP) collectors, such as heliostats and parabolic troughs. These structures must resist the mechanical forces generated by turbulent wind. At the same time, the reflector surfaces must exhibit the necessary rigidity to maintain their optimal optical performance in windy conditions. Over two years, NREL conducted comprehensive field measurements of the atmospheric turbulent wind conditions and the resulting structural wind loads on parabolic troughs at the Nevada Solar One (NSO) plant. The measurement set-up included meteorological masts and structural load sensors on four trough rows. Additionally, we commissioned a lidar scanning the horizontal plane over the trough field. This data set catalogs the high-resolution data set characterizing the complex flow field and resulting structural loads on parabolic trough collectors. By providing this first-of-its-kind data set to the CSP community, we aim to enhance the community's understanding of wind-loading experienced by CSP collector structures. This data set will also help design next-generation solar collectors and photovoltaic trackers.
Lithium/sodium metal batteries (LMBs/SMBs) possess immense potential for various applications due to their high energy density. Nevertheless, LMBs/SMBs are highly susceptible to the detrimental effects of an unstable solid electrolyte interphase (SEI) and dendrites during practical applications, particularly pronounced in low-temperature environments. Furthermore, sluggish ion transportation further compromises the cycling stability of LMBs/SMBs at low temperatures. To achieve stable operation of LMBs/SMBs at low temperatures, researchers have made numerous efforts including electrolyte optimization aimed at creating stable SEIs and suppressing the metal dendrites under low temperature conditions. Despite the significant advancements made recently in the liquid electrolyte design, there remains considerable hurdle in electrolyte engineering for practical low-temperature, high energy density LMBs/SMBs, calling for a profound comprehension of the intricate interplay between the electrochemical reaction kinetics and electrolyte compositions. Here, this review provides a thorough overview of various strategies in optimizing liquid electrolytes covering weakly solvating electrolytes, concentration-designed electrolytes, and solvation structure-designed electrolytes, to address the challenges faced by LMBs/SMBs at low temperatures, including slow reaction kinetics and the difficulties in Li + /Na + solvation/desolvation. Furthermore, this review discusses future prospects for the advancement of this field, intending to provide valuable insights and support for subsequent research undertakings.