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At least 109 records · Page 6

Multispectral and Thermal Imager Onboard Aerial Platforms Instrument Handbook

The MicaSense Altum imager is an off-the-shelf, synchronized multispectral and thermal camera, combined with a Global Positioning System (GPS) unit and downwelling light sensor (DLS). The Altum takes images of the land surface within its field of view (FOV) across five visible bands and one longwave infrared thermal band. The sensor records the radiance and converts it to digital numbers. Imagery is radiometrically corrected, taking into account the sensor calibration, lens distortions, vignette effects, sun angle, and atmospheric effects (scattering and absorption). The photogrammetry software Agisoft PhotoScan v 1.4 is used to align and stitch the images into a larger composite image using the technique of structure from motion image capture to construct a dense cloud and 3D model of the surface, which is used to produce a digital elevation model of the terrain surveyed and orthomosaic imagery. Land surface leaf area index, albedo, and surface skin temperature are provided for the user. The user can perform raster calculations on the imagery to produce various other vegetative indices, which are used to indicate plant health and land surface characteristics, including Normalized Difference Vegetation Index (NDVI), Green Normalized Difference Vegetation Index (GNDVI), Normalized Difference Water Index (NDWI), surface temperature, and Enhanced_vegetation_index (EVI). This code is provided with the readme file for each data set. The images have a resolution of 20-60 cm/pixel, which are subsampled to 100 cm/pixel.

47 OTHER INSTRUMENTATION↗

Sustainability Trait Modeling of Field-Grown Switchgrass ( Panicum virgatum ) Using UAV-Based Imagery

Unmanned aerial vehicles (UAVs) provide an intermediate scale of spatial and spectral data collection that yields increased accuracy and consistency in data collection for morphological and physiological traits than satellites and expanded flexibility and high-throughput compared to ground-based data collection. In this study, we used UAV-based remote sensing for automated phenotyping of field-grown switchgrass (Panicum virgatum), a leading bioenergy feedstock. Using vegetation indices calculated from a UAV-based multispectral camera, statistical models were developed for rust disease caused by Puccinia novopanici, leaf chlorophyll, nitrogen, and lignin contents. For the first time, UAV remote sensing technology was used to explore the potentials for multiple traits associated with sustainable production of switchgrass, and one statistical model was developed for each individual trait based on the statistical correlation between vegetation indices and the corresponding trait. Also, for the first time, lignin content was estimated in switchgrass shoots via UAV-based multispectral image analysis and statistical analysis. The UAV-based models were verified by ground-truthing via correlation analysis between the traits measured manually on the ground-based with UAV-based data. The normalized difference red edge (NDRE) vegetation index outperformed the normalized difference vegetation index (NDVI) for rust disease and nitrogen content, while NDVI performed better than NDRE for chlorophyll and lignin content. Overall, linear models were sufficient for rust disease and chlorophyll analysis, but for nitrogen and lignin contents, nonlinear models achieved better results. As the first comprehensive study to model switchgrass sustainability traits from UAV-based remote sensing, these results suggest that this methodology can be utilized for switchgrass high-throughput phenotyping in the field.

60 APPLIED LIFE SCIENCES↗

Red edge spectral measurements from sugar maple leaves

Many sugar maple stands in the northeastern United States experienced extensive insect damage during the 1988 growing season. Chlorophyll data and high spectral resolution spectrometer laboratory reflectance data were acquired for multiple collections of single detached sugar maple leaves variously affected by the insect over the 1988 growing season. Reflectance data indicated consistent and diagnostic differences in the red edge portion (680-750 nm) of the spectrum among the various samples and populations of leaves. These included differences in the red edge inflection point (REIP), a ratio of reflectance at 740-720 nm (RE3/RE2), and a ratio of first derivative values at 715-705 nm (D715/D705). All three red edge parameters were highly correlated with variation in total chlorophyll content. Other spectral measures, including the Normalized Difference Vegetation Index (NDVI) and the Simple Vegetation Index Ratio (VI), also varied among populations and over the growing season, but did not correlate well with total chlorophyll content. Leaf stacking studies on light and dark backgrounds indicated REIP, RE3/RE2 and D715/D705 to be much less influenced by differences in green leaf biomass and background condition than either NDVI or VI.

Vogelmann, J. E.↗

Yellowstone Ecological Forecasting: Assessing Change in Aspen Extent in Northern Yellowstone National Park

The removal and reintroduction of the gray wolf (Canis lupus) in Yellowstone National Park have played an important role in shaping the ecological composition of this distinct landscape, and it is a textbook example of multi-trophic dynamics. With particular importance to conservation science, the inter-trophic cascades between wolves and species such as the elk (Cervus canadensis) and the quaking aspen (Populus tremuloides) have been extensively studied. In conjunction with the National Park Service, Yellowstone National Park, Utah State University, and the University of Wisconsin–Stevens Point, this project utilized satellite remote sensing to investigate the long-term trends in aspen extent. Through random forest modeling and phenological approaches, Sentinel-2 Multispectral Instrument (MSI; years 2017–2019) and Landsat 5 Thematic Mapper (TM; years 1987–2011) datasets were used to derive an Enhanced Vegetation Index (EVI), a Normalized Difference Vegetation Index (NDVI), Tasseled Cap Indices (Brightness, Greenness, Wetness), and RGB true color composites. The International Space System Global Ecosystem Dynamics Investigation (ISS GEDI) was used to analyze canopy height. Results were consolidated into maps and time-series that provide an in-depth and intricate depiction of aspen stand extent. The end products will assist the National Park Service in its management practices and inform wildlife restoration and rewilding decisions within and beyond the contexts of Yellowstone National Park.

Kyle Steen↗

An Enhanced TIMESAT Algorithm for Estimating Vegetation Phenology Metrics from MODIS Data

An enhanced TIMESAT algorithm was developed for retrieving vegetation phenology metrics from 250 m and 500 m spatial resolution Moderate Resolution Imaging Spectroradiometer (MODIS) vegetation indexes (VI) over North America. MODIS VI data were pre-processed using snow-cover and land surface temperature data, and temporally smoothed with the enhanced TIMESAT algorithm. An objective third derivative test was applied to define key phenology dates and retrieve a set of phenology metrics. This algorithm has been applied to two MODIS VIs: Normalized Difference Vegetation Index (NDVI) and Enhanced Vegetation Index (EVI). In this paper, we describe the algorithm and use EVI as an example to compare three sets of TIMESAT algorithm/MODIS VI combinations: a) original TIMESAT algorithm with original MODIS VI, b) original TIMESAT algorithm with pre-processed MODIS VI, and c) enhanced TIMESAT and pre-processed MODIS VI. All retrievals were compared with ground phenology observations, some made available through the National Phenology Network. Our results show that for MODIS data in middle to high latitude regions, snow and land surface temperature information is critical in retrieving phenology metrics from satellite observations. The results also show that the enhanced TIMESAT algorithm can better accommodate growing season start and end dates that vary significantly from year to year. The TIMESAT algorithm improvements contribute to more spatial coverage and more accurate retrievals of the phenology metrics. Among three sets of TIMESAT/MODIS VI combinations, the start of the growing season metric predicted by the enhanced TIMESAT algorithm using pre-processed MODIS VIs has the best associations with ground observed vegetation greenup dates.

Tan, Bin↗

Phenological Parameters Estimation Tool

The Phenological Parameters Estimation Tool (PPET) is a set of algorithms implemented in MATLAB that estimates key vegetative phenological parameters. For a given year, the PPET software package takes in temporally processed vegetation index data (3D spatio-temporal arrays) generated by the time series product tool (TSPT) and outputs spatial grids (2D arrays) of vegetation phenological parameters. As a precursor to PPET, the TSPT uses quality information for each pixel of each date to remove bad or suspect data, and then interpolates and digitally fills data voids in the time series to produce a continuous, smoothed vegetation index product. During processing, the TSPT displays NDVI (Normalized Difference Vegetation Index) time series plots and images from the temporally processed pixels. Both the TSPT and PPET currently use moderate resolution imaging spectroradiometer (MODIS) satellite multispectral data as a default, but each software package is modifiable and could be used with any high-temporal-rate remote sensing data collection system that is capable of producing vegetation indices. Raw MODIS data from the Aqua and Terra satellites is processed using the TSPT to generate a filtered time series data product. The PPET then uses the TSPT output to generate phenological parameters for desired locations. PPET output data tiles are mosaicked into a Conterminous United States (CONUS) data layer using ERDAS IMAGINE, or equivalent software package. Mosaics of the vegetation phenology data products are then reprojected to the desired map projection using ERDAS IMAGINE

McKellip, Rodney D.↗

Normalization of multidirectional red and NIR reflectances with the SAVI

Directional reflectance measurements were made over a semi-desert gramma grassland at various times of the growing season. View angle measurements from +40 to -40 degrees were made at various solar zenith angles and soil moisture conditions. The sensitivity of the Normalized Difference Vegetation Index (NDVI) and the Soil Adjusted Vegetation Index (SAVI) to bidirectional measurements was assessed for purposes of improving remote temporal monitoring of vegetation dynamics. The SAVI view angle response was found to be symmetric about nadir while the NDVI response was strongly anisotropic. This enabled the view angle behavior of the SAVI to be normalized with a cosine function. In contrast to the NDVI, the SAVI was able to minimize soil moisture and shadow influences for all measurement conditions.

Huete, A. R.↗

Solar position confounds the relationship between ecosystem function and vegetation indices derived from solar and photosynthetically active radiation fluxes

Vegetation indices derived from solar and photosynthetically active radiation (PAR) sensors (i.e. radiation derived) have been under-utilized in inferring ecosystem function, despite measurement capability at hundreds of sites. This under-utilization may be attributed to reported mismatches among the seasonality of radiation- and satellite-derived vegetation indices and canopy photosynthesis; herein referred to as measurement biases. In this work, biases in radiation derived reflectance and vegetation indices were assessed using a decadal record of satellite and ground based spectroradiometer data, ecosystem phenology and CO 2 fluxes, and radiation derived vegetation indices (i.e. the Normalized Difference Vegetation Index [NDVI], the two band Enhanced Vegetation Index [EVI2]) from a high latitude tundra site (i.e. Imnaviat). At Imnaviat, we found poor correspondence between the three types of reflectance and vegetation indices, especially during the latter part of the growing season. Radiation derived vegetation indices resulted in incorrect estimates of phenological timing of up to a month and poor relationships with canopy photosynthesis (i.e. Gross Ecosystem Exchange (GEE)). These mismatches were attributed to solar position (i.e. solar zenith and azimuth angle) and a method, based on the diel visible and near-infrared albedo variation, was developed to improve the performance of the vegetation indices. The ability of radiation derived vegetation indices to infer GEE and phenological dates drastically improved once radiation derived vegetation indices were corrected for solar position associated biases at Imnaviat. Moreover, radiation derived vegetation indices became better aligned with MODerate resolution Imaging Spectroradiometer (MODIS) satellite estimates after solar position associated biases were corrected at Imnaviat and at 25 Fluxnet sites (~90 site years) across North America. Corrections developed here provide a way forward in understanding daily ecosystem function or filling large gaps in eddy covariance data at a significant number of Fluxnet sites.

54 ENVIRONMENTAL SCIENCES↗

Direct and indirect methods for correcting the aerosol effect on remote sensing

Aspects of aerosol studies and remote sensing are reviewed. Aerosol scatters solar radiation before it reaches the surface and scatters and absorbs it again after it is reflected from the surface and before it reaches the satellite sensor. The effect is spectrally and spatially dependent. Therefore atmospheric aerosol (dust, smoke and air pollution particles) has a significant effect on remote sensing. Correction for the aerosol effect was never achieved on an operational basis though several case studies were demonstrated. Correction can be done in a direct way by deriving the aerosol loading from the image itself and correcting for it using the appropriate radiative transfer model or by an indirect way, by defining remote sensing functions that are less dependent on the aerosol loading. To some degree this was already achieved in global remote sensing of vegetation where a composite of several days of NDVI (Normalized Difference Vegetation Index) measurements, choosing the maximal value, was used instead of a single cloud screened value. The Atmospheric Resistant Vegetation Index (ARVI) introduced recently for the NASA Earth Observing System EOS-MODIS is the most appropriate example of indirect correction, where the index is defined in such a way that the atmospheric effect in the blue spectral channel cancels to a large degree the atmospheric in the red channel in computations of a vegetation index. Atmospheric corrections can also use aerosol climatology and ground based instrumentation.

Kaufman, Yoram J.↗

Distinguishing vegetation from soil background information

In aircraft and satellite multispectral scanner data, soil background signals are superimposed on or intermingled with information about vegetation. A procedure which accounts for soil background would, therefore, make a considerable contribution to an operational use of Landsat and other spectral data for monitoring the productivity of range, forest, and crop lands. A description is presented of an investigation which was conducted to obtain information for the development of such a procedure. The investigation included a study of the soil reflectance that supplies the background signal of vegetated surfaces. Landsat data as recorded on computer compatible tapes were used in the study. The results of the investigation are discussed, taking into account a study reported by Kauth and Thomas (1976). Attention is given to the determination of Kauth's plane of soils, sun angle effects, vegetation index modeling, and the evaluation of vegetation indexes. Graphs are presented which show the results obtained with a gray mapping technique. The technique makes it possible to display plant, soil, water, and cloud conditions for any Landsat overpass.

Richardson, A. J.↗

Spectral bidirectional reflectance and effects on vegetation indices for a prairie grassland

Preliminary results of bidirectional reflectance data from two radiometric devices are presented and considered in the light of surface biophysical properties that affect surface radiometric parameters. The Portable Apparatus for Rapid Acquisition of Bidirectional Observations of the Land and Atmosphere and a high spectral continuous-wavelength spectroradiometer called the SE590 are employed to study hemispherical-conical reflectance factors. Examples of the resulting data sets are presented which show that the normalized-difference vegetation index and the Simple-Ratio vegetation index depend on the solar zenith and sensor-view zenith angles. Consideration is given to the importance of latitude, season, and time of day in interpreting the results of the indices since these factors can significantly affect the interpretive parameters.

Deering, D. W.↗

Evaluating Corn (Zea Mays L.) N Variability Via Remote Sensed Data

Transformations and losses of nitrogen (N) throughout the growing season can be costly. Methods in place to improve N management and facilitate split N applications during the growing season can be time consuming and logistically difficult. Remote sensing (RS) may be a method to rapidly assess temporal changes in crop N status and promote more efficient N management. This study was designed to evaluate the ability of three different RS platforms to predict N variability in corn (Zea mays L.) leaves during vegetative and early reproductive growth stages. Plots (15 x 15m) were established in the Coastal Plain (CP) and Appalachian Plateau (AP) physiographic regions each spring from 2000 to 2002 in a completely randomized design. Treatments consisted of four N rates (0, 56, 112, and 168 kg N/ha) applied as ammonium nitrate (NH4N03) replicated four time. Spectral measurements were acquired via spectroradiometer (lambda = 350 - 1050 nm), Airborne Terrestrial Applications Sensor (ATLAS) (lambda = 400 - 12,500 nm), and the IKONOS satellite (lambda = 450 - 900 nm). Spectroradiometer data were collected on a biweekly basis from V4 through R1. Due to the nature of - satellite and aircraft acquisitions, these data were acquired per availability. Chlorophyll meter (SPAD) and tissue N were collected as ancillary data along with each RS acquisition. Results showed vegetation indices derived from hand-held spectroradiometer measurements as early as V6-V8 were linearly related to yield and tissue N content. ATLAS data was correlated with tissue N at the AP site during the V6 stage (r2 = 0.66), but no significant relationships were observed at the CP site. No significant relationships were observed between plant N and IKONOS imagery. Using a combination of the greenness vegetation index (GNDVI) and the normalized difference vegetation index (NDVI), RS data acquired via ATLAS and the spectroradiometer could be used to evaluate tissue N variability and estimate corn yield variability under ideal growing conditions.

Sullivan, D. G.↗

Bhutan Water Resources II: Comparing Phenology, Precipitation, and Temperature Data in Bhutan to Assist the Himalayan Environmental Rhythm Observation and Evaluation System (HEROES) Project

Bhutan is vulnerable to climate fluctuations that can affect vegetation phenology patterns. Changes in the climate have raised concerns from local farmers about altered growing seasons. In response, the DEVELOP team assessed annual vegetation phenology trends across Bhutan from 1981-2014 by comparing vegetation phenology-derived data and meteorological data. The project assessed phenology change using Vegetation Index and Phenology (VIP) Normalized Difference Vegetation Index (NDVI) products from the Advanced Very High-Resolution Radiometer (AVHRR) and the Terra and Aqua Moderate Resolution Imaging Spectroradiometer (MODIS) sensors. We also used Climate Hazards Center Infrared Precipitation with Station (CHIRPS) precipitation data and Famine Early Warning System Network Land Data Assimilation System (FLDAS) temperature data to assess climate trends in the country. The team assessed VIP phenology data for 1981-2014 to assess trends for the start of season, day of peak, and length of season. For the main growing season, the results indicated that the start of season and day of peak were delayed, while the length of season increased by 22 days. Analysis of temperature and precipitation data for the early 1980s to present indicted that Bhutan’s temperature has become warmer and precipitation has increased. Satellite-based precipitation and temperature data were compared to in situ precipitation and temperature data, yielding high correlations for both precipitation (R=0.85) and temperature (R=0.9). The project results and methods were shared with the Ugyen Wangchuck Institute for Conservation and Environmental Research (UWICER) to help assess climate change impacts in Bhutan.

DEVELOP Tech Paper↗

Remote Sensing of Evapotranspiration and Carbon Uptake at Harvard Forest

A land surface vegetation index, defined as the difference of microwave land surface emissivity at 19 and 37 GHz, was calculated for a heavily forested area in north central Massachusetts. The microwave emissivity difference vegetation index (EDVI) was estimated from satellite SSM/I measurements at the defined wavelengths and used to estimate land surface turbulent fluxes. Narrowband visible and infrared measurements and broadband solar radiation observations were used in the EDVI retrievals and turbulent flux estimations. The EDVI values represent physical properties of crown vegetation such as vegetation water content of crown canopies. The collocated land surface turbulent and radiative fluxes were empirically linked together by the EDVI values. The EDVI values are statistically sensitive to evapotranspiration fractions (EF) with a correlation coefficient (R) greater than 0.79 under all-sky conditions. For clear skies, EDVI estimates exhibit a stronger relationship with EF than normalized difference vegetation index (NDVI). Furthermore, the products of EDVI and input energy (solar and photosynthetically-active radiation) are statistically significantly correlated to evapotranspiration (R=0.95) and CO2 uptake flux (R=0.74), respectively.

Min, Qilong↗

Evaluation of spatial, radiometric and spectral Thematic Mapper performance for coastal studies

The effect different wetland plant canopies have upon observed reflectance in Thematic Mapper bands is examined. The three major vegetation canopy types (broadleaf, gramineous and leafless) produce unique spectral responses for a similar quantity of live biomass. Biomass estimates computed from spectral data were most similar to biomass estimates determined from harvest data when models developed for a specific canopy were used. Precise determination of regression coefficients for each canopy type and modeling changes in the coefficients with various combinations of canopy types are being tested. The multispectral band scanner vegetation index estimates are very similar to the vegetation index estimates.

Klemas, V.↗

Mapping Biophysical Parameters for Land Surface Modeling over the Continental US Using MODIS and Landsat

In terms of the space cities occupy, urbanization appears as a minor land transformation. However, it permanently modifies land's ecological functions, altering its carbon, energy, and water fluxes. It is therefore necessary to develop a land cover characterization at fine spatial and temporal scales to capture urbanization's effects on surface fluxes. We develop a series of biophysical vegetation parameters such as the fraction of photosynthetically active radiation, leaf area index, vegetation greenness fraction, and roughness length over the continental US using MODIS and Landsat products for 2001. A 13-class land cover map was developed at a climate modeling grid (CMG) merging the 500mMODIS land cover and the 30m impervious surface area from the National Land Cover Database. The landscape subgrid heterogeneity was preserved using fractions of each class from the 500 m and 30 m into the CMG. Biophysical parameters were computed using the 8-day composite Normalized Difference Vegetation Index produced by the North American Carbon Program. In addition to urban impact assessments, this dataset is useful for the computation of surface fluxes in land, vegetation, and urban models and is expected to be widely used in different land cover and land use change applications.

Biophysical↗

AVHRR monitoring of U.S. crops during the 1988 drought

Effects of the 1988 drought on crops in the U.S. Corn Belt were assessed and monitored by the Foreign Crop Condition Assessment Division (FCCAD), U.S. Department of Agriculture. The primary data were vegetation index numbers (VINs), each of which was calculated as an average vegetation index of a geographically referenced cell of AVHRR pixels. Using VINs, the FCCAD was able to detect the existence of drought early in the season, monitor changing conditions, and provide objective assessments of the drought's extent and severity. Field observations confirmed the image analyses, and underlined the importance of the timing of extreme weather events with respect to crop stages for interpreting VINs. The analyses were conducted in an operational environment, providing a unique test of the AVHRR data for large area, near real-time crop monitoring. Because large area, operational remote sensing of crops is quite different from traditional, controlled, small plot research studies, more work is needed to link the two; this would improve crop assessment capabilities.

Teng, William L.↗