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At least 1,081 records · Page 60

An evaluation of the method for determining the Whitham F-function using distributions of downwash and sidewash angles

The method of computing the Whitham F function using distributions of downwash and sidewash angles was evaluated with two different models. F functions which were calculated for a half angle cone cylinder at M infinites = 2.01, using theoretically and experimentally derived flow angles, show that the method is sensitive to small inaccuracies in the measured flow angles. An oblique wing transport model was tested at 0 deg angle of attack at M infinitely = 2.01. In this test, two different probes were used at two different distances from the model. The pressure signature derived from the F function was extrapolated and compared to the pressure signature measured at the distance of 0.87 body lengths with the static pressure probe. The agreement between the two pressure signatures was poor due to the many inaccuracies involved in using a probe designed to measure flow angularity.

Mendoza, J. P.↗

Interacting boson models for N{approx}Z nuclei

This contribution discusses the use of boson models in the description of N{approx}Z nuclei. A brief review is given of earlier attempts, initiated by Elliott and co-workers, to extend the interacting boson model of Arima and Iachello by the inclusion of neutron-proton s and d bosons with T = 1 (IBM-3) as well as T = 0 (IBM-4). It is argued that for the N{approx}Z nuclei that are currently studied experimentally, a different approach is needed which invokes aligned neutron-proton pairs with angular momentum J = 2j and isospin T = 0. This claim is supported by an analysis of shell-model wave functions in terms of pair states. Results of this alternative version of the interacting boson model are compared with shell-model calculations in the 1g{sub 9/2} shell.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Stochastic simulation of vertically nonhomogeneous gusts

The small-scale horizontal gust structure of detailed wind profiles along the vertical in the first 20 km of the atmosphere is a vertically nonhomogeneous process. A linear stochastic model is developed for the process based on the process covariance function. This model is formulated through the use of a scaling hypothesis that transforms the nonhomogeneous gust process into a nondimensional gust process which is homogeneous in a nondimensional height coordinate. The velocity scaling parameter for the gust process is the gust standard deviation, and the length scale used to nondimensionalize the altitude is the vertical space lag associated with the first zero of the gust covariance function. State space theory is used to derive a digital filter from the model, which can be readily used to simulate gusts for space vehicle design applications.

Fichtl, G. H.↗

The three-point function as a probe of models for large-scale structure

The consequences of models of structure formation for higher-order (n-point) galaxy correlation functions in the mildly non-linear regime are analyzed. Several variations of the standard Omega = 1 cold dark matter model with scale-invariant primordial perturbations were recently introduced to obtain more power on large scales, R(sub p) is approximately 20 h(sup -1) Mpc, e.g., low-matter-density (non-zero cosmological constant) models, 'tilted' primordial spectra, and scenarios with a mixture of cold and hot dark matter. They also include models with an effective scale-dependent bias, such as the cooperative galaxy formation scenario of Bower, etal. It is shown that higher-order (n-point) galaxy correlation functions can provide a useful test of such models and can discriminate between models with true large-scale power in the density field and those where the galaxy power arises from scale-dependent bias: a bias with rapid scale-dependence leads to a dramatic decrease of the hierarchical amplitudes Q(sub J) at large scales, r is approximately greater than R(sub p). Current observational constraints on the three-point amplitudes Q(sub 3) and S(sub 3) can place limits on the bias parameter(s) and appear to disfavor, but not yet rule out, the hypothesis that scale-dependent bias is responsible for the extra power observed on large scales.

Frieman, Joshua A.↗

Investigating the Global Biogeophysical Impact of Area and Mass Based Wood Harvest in a Vegetation Demography Model

Wood harvesting alters land surface properties and energy redistribution, but there is a lack of studies estimating these changes on a global scale. We coupled a vegetation demographic model, the Functionally Assembled Terrestrial Ecosystem Simulator, with the E3SM land model to perform offline model simulation to investigate the land biogeophysical responses, including canopy coverage, leaf area index, albedo, surface roughness length, and energy fluxes, to historical wood harvest on the global scale. In this study, we found 50% less harvested carbon (C) when choosing the area-based harvest rate as driving data that has not been spatially harmonized, compared to reharmonized mass-based harvesting. By considering the uncertainty from reconstruction of historical wood harvest time series and the choice of wood harvest approach in the model, continuous wood harvest (1850–2015) results in 5%–10% of canopy coverage loss, contributing 0.5%–1% increase of albedo over disturbed land, which is much stronger than a non-demographic land surface model. Changes in energy flux from the wood harvest are negligible (<1%), but the responses of land surface properties vary (up to 30%) due to differences in model structure between the single canopy, sun-shade leaf model and vegetation demographic model.

Shu, Shijie [Lawrence Berkeley National Laboratory↗

Measuring semantic similarities by combining gene ontology annotations and gene co-function networks

Background: Gene Ontology (GO) has been used widely to study functional relationships between genes. The current semantic similarity measures rely only on GO annotations and GO structure. This limits the power of GO-based similarity because of the limited proportion of genes that are annotated to GO in most organisms. Results: We introduce a novel approach called NETSIM (network-based similarity measure) that incorporates information from gene co-function networks in addition to using the GO structure and annotations. Using metabolic reaction maps of yeast, Arabidopsis, and human, we demonstrate that NETSIM can improve the accuracy of GO term similarities. We also demonstrate that NETSIM works well even for genomes with sparser gene annotation data. We applied NETSIM on large Arabidopsis gene families such as cytochrome P450 monooxygenases to group the members functionally and show that this grouping could facilitate functional characterization of genes in these families. Conclusions: Using NETSIM as an example, we demonstrated that the performance of a semantic similarity measure could be significantly improved after incorporating genome-specific information. NETSIM incorporates both GO annotations and gene co-function network data as a priori knowledge in the model. Therefore, functional similarities of GO terms that are not explicitly encoded in GO but are relevant in a taxon-specific manner become measurable when GO annotations are limited.

59 BASIC BIOLOGICAL SCIENCES↗

Investigating the Dynamic Compaction Behavior of Brittle Powders

The compression of porous materials to full density is a complex physical and mechanical process. Modeling efforts to capture the compaction behavior of distended solids (e.g., porous materials or powders) have produced a variety of compaction models, each functionalized to address specific compaction mechanisms. Of the available models, those suited for high-strain-rate deformation associated with shock loading have generally been developed for ductile materials. Compaction models for brittle materials have only been developed for quasistatic loading conditions. No predictive models currently exist that successfully capture the physical processes and mechanics for shock compaction of brittle distended materials, such as sand and oxide powders. The primary hindrance in producing a dynamic compaction model for brittle distended materials is the lack of availability of high-fidelity, high-precision shock compaction data for validation. The proposed work is aimed at alleviating this issue by developing a high-precision testing method in combination with high-fidelity analysis methods to accurately and precisely determine the shocked state of an ideal test material, ceria powder, under uniaxial strain dynamic compaction. The measured shock compaction data from these brittle powder experiments is then used in initial computations to design a cylindrically converging shock compaction experiment within situ time-resolved shocked density measurements, employing proton radiography. The preliminary experimental and computational results obtained from these uniaxial strain dynamic compaction and cylindrically converging shock compaction experiments are presented. An experimental and computational path forwards to predictive model development is then proposed.

36 MATERIALS SCIENCE↗

Analysis of Wind Tunnel Longitudinal Static and Oscillatory Data of the F-16XL Aircraft

Static and oscillatory wind tunnel data are presented for a 10-percent-scale model of an F-16XL aircraft. Static data include the effect of angle of attack, sideslip angle, and control surface deflections on aerodynamic coefficients. Dynamic data from small-amplitude oscillatory tests are presented at nominal values of angle of attack between 20 and 60 degrees. Model oscillations were performed at five frequencies from 0.6 to 2.9 Hz and one amplitude of 5 degrees. A simple harmonic analysis of the oscillatory data provided Fourier coefficients associated with the in-phase and out-of-phase components of the aerodynamic coefficients. A strong dependence of the oscillatory data on frequency led to the development of models with unsteady terms in the form of indicial functions. Two models expressing the variation of the in-phase and out-of-phase components with angle of attack and frequency were proposed and their parameters estimated from measured data.

Klein, Vladislav↗

Prediction of Aerodynamic Coefficient using Genetic Algorithm Optimized Neural Network for Sparse Data

Wind tunnels use scale models to characterize aerodynamic coefficients, Wind tunnel testing can be slow and costly due to high personnel overhead and intensive power utilization. Although manual curve fitting can be done, it is highly efficient to use a neural network to define the complex relationship between variables. Numerical simulation of complex vehicles on the wide range of conditions required for flight simulation requires static and dynamic data. Static data at low Mach numbers and angles of attack may be obtained with simpler Euler codes. Static data of stalled vehicles where zones of flow separation are usually present at higher angles of attack require Navier-Stokes simulations which are costly due to the large processing time required to attain convergence. Preliminary dynamic data may be obtained with simpler methods based on correlations and vortex methods; however, accurate prediction of the dynamic coefficients requires complex and costly numerical simulations. A reliable and fast method of predicting complex aerodynamic coefficients for flight simulation I'S presented using a neural network. The training data for the neural network are derived from numerical simulations and wind-tunnel experiments. The aerodynamic coefficients are modeled as functions of the flow characteristics and the control surfaces of the vehicle. The basic coefficients of lift, drag and pitching moment are expressed as functions of angles of attack and Mach number. The modeled and training aerodynamic coefficients show good agreement. This method shows excellent potential for rapid development of aerodynamic models for flight simulation. Genetic Algorithms (GA) are used to optimize a previously built Artificial Neural Network (ANN) that reliably predicts aerodynamic coefficients. Results indicate that the GA provided an efficient method of optimizing the ANN model to predict aerodynamic coefficients. The reliability of the ANN using the GA includes prediction of aerodynamic coefficients to an accuracy of 110% . In our problem, we would like to get an optimized neural network architecture and minimum data set. This has been accomplished within 500 training cycles of a neural network. After removing training pairs (outliers), the GA has produced much better results. The neural network constructed is a feed forward neural network with a back propagation learning mechanism. The main goal has been to free the network design process from constraints of human biases, and to discover better forms of neural network architectures. The automation of the network architecture search by genetic algorithms seems to have been the best way to achieve this goal.

Rajkumar, T.↗

Active Learning‐Driven Inkless Additive Nanomanufacturing for Printed Electronics

Inkless additive nanomanufacturing for printed electronics promises broad material and substrate versatility, yet the high-dimensional print parameter space makes tuning print parameters time-intensive. We present a Bayesian optimization study that constructs a digital twin from printed-silver data to benchmark surrogate models, acquisition functions, and batch sizes head-to-head to achieve user-specified target resistance. Tested surrogate models included Gaussian process, random forest, and Bayesian neural network surrogates with expected improvement and confidence bound acquisition functions. In total, we evaluate 48 unique model configurations alongside a random sampling baseline for comparison. For printed silver, the Bayesian neural network with a batch size of one achieved the lowest average cumulative regret, approximately four times more efficient on average than random sampling. To balance performance and substrate space, a random forest model with expected improvement and a batch size of four was chosen as the model for validation testing. Applying this chosen configuration to copper with an additional print parameter, the model achieved a resistance within 0.15 Ω of a 1 Ω target in fewer than 30 printed lines across five validation sets. Altogether, the workflow yields a tuned and validated model that efficiently guides experiments toward the target while simultaneously learning the parameter space.

Bevel, Colton [Auburn University, AL (United State↗

An extended vector space model for information retrieval with generalized similarity measures: theory and applications

We present an Extended Vector Space Model (EVSM) for information retrieval, endowed with a new set of similarity functions. Our model considers records as multisets of tokens. A token weight function maps records into a real vectors. Using this vector representation we define a p -norm of a record and pairwise conjunction and disjunction operations on records. These oper ations prompt consistent extensions of published set-based similarity functions and yield new $\ell$ p distance-based similarities. We demonstrate that some well-known similarities form a subset of the new functions resulting from particular choices of token weights and p -values.

Paskaleva, Biliana Stefanova↗

Functional Data Analysis in NTCP Modeling: A New Method to Explore the Radiation Dose-Volume Effects

Purpose/Objective(s): To describe a novel method to explore radiation dose-volume effects. Functional data analysis is used to investigate the information contained in differential dose-volume histograms. The method is applied to the normal tissue complication probability modeling of rectal bleeding (RB) for patients irradiated in the prostatic bed by 3-dimensional conformal radiation therapy. Methods and Materials: Kernel density estimation was used to estimate the individual probability density functions from each of the 141 rectum differential dose-volume histograms. Functional principal component analysis was performed on the estimated probability density functions to explore the variation modes in the dose distribution. The functional principal components were then tested for association with RB using logistic regression adapted to functional covariates (FLR). For comparison, 3 other normal tissue complication probability models were considered: the Lyman-Kutcher-Burman model, logistic model based on standard dosimetric parameters (LM), and logistic model based on multivariate principal component analysis (PCA). Results: The incidence rate of grade ≥2 RB was 14%. V{sub 65Gy} was the most predictive factor for the LM (P=.058). The best fit for the Lyman-Kutcher-Burman model was obtained with n=0.12, m = 0.17, and TD50 = 72.6 Gy. In PCA and FLR, the components that describe the interdependence between the relative volumes exposed at intermediate and high doses were the most correlated to the complication. The FLR parameter function leads to a better understanding of the volume effect by including the treatment specificity in the delivered mechanistic information. For RB grade ≥2, patients with advanced age are significantly at risk (odds ratio, 1.123; 95% confidence interval, 1.03-1.22), and the fits of the LM, PCA, and functional principal component analysis models are significantly improved by including this clinical factor. Conclusion: Functional data analysis provides an attractive method for flexibly estimating the dose-volume effect for normal tissues in external radiation therapy.

62 RADIOLOGY AND NUCLEAR MEDICINE↗

International Space Station Bipropellant Plume Contamination Model Update for Short Thruster Pulse Widths

The International Space Station (ISS) Bipropellant Plume Contamination Model has been a vital tool for characterizing the thruster plume-induced contamination environment at the ISS but was not intended to be used for very short thruster pulse widths. This paper presents an updated model that ensures full start-up and shut-down phases are modeled for each thruster firing, when the majority of liquid phase contaminant mass is released. The updated ISS Bipropellant Plume Contamination Model prevents potential under-prediction of thruster plume-induced contamination due to visiting vehicle proximity operations and provides a way to take advantage of thruster start-up and shut-down data performance data gathered during thruster test programs, if available. The International Space Station (ISS) Bipropellant Plume Contamination Model developed by Boeing Space Environments is a semi-empirical model anchored in flight experiment data and has been a vital tool for characterizing the thruster plume-induced contamination environment at the ISS.[1] The current model utilizes flight experiment data from the Plume Impingement Contamination (PIC) and Shuttle Plume Impingement Flight Experiment (SPIFEX) studies, which include Orbiter 3870 N Primary Reaction Control System (PRCS) and Russian 130 N thrusters operating in pulse mode with 80-100 ms.[2] As the next generation of crew and cargo visiting vehicles are developed and arrive at ISS, minimum pulse widths of vehicle thrusters used for ISS proximity operations have decreased significantly below 80 ms. An update to the ISS Bipropellant Contamination Model is needed to prevent potential under-prediction of thruster plume-induced contamination for these very short pulse widths. Contamination due to thruster plumes occurs in the liquid phase (i.e., unburned or partially burned propellant in the plume). Liquid phase releases primarily occur during thruster start-up and shut-down phases, with the steady state phase contributing a small amount to the total contaminant mass released. The current ISS Bipropellant Plume Contamination Model includes functional dependencies on thruster parameters (thrust, mass flow rate, specific impulse (Isp)), distance to receiver surface, and angle off plume centerline. For modeling purposes, contaminant mass released scales linearly with pulse width. This is a conservative approach for pulse widths greater than 80 ms but could under-predict contamination for very short pulse widths (i.e., with little or no steady state phase). This paper presents a model update to add a functional dependency on commanded pulse width to ensure the portion of the pulse spent in start-up and shut-down phases is appropriately modeled, when the majority of liquid phase contaminant mass is released. The updated model prevents potential under-prediction of thruster plume-induced contamination due to visiting vehicle proximity operations while providing a way to take advantage of thruster start-up and shut-down data gathered during test programs, if available. Developing the plume model for a specific thruster using the ISS Bipropellant Plume Contamination Model must be done in consideration of all available thruster performance data. Example thruster data will be used to illustrate this point and options for implementing the model update with existing ISS Bipropellant Plume Contamination Model code will be discussed.

plume contamination↗

Geometrical approach to neural net control of movements and posture

In one approach to modeling brain function, sensorimotor integration is described as geometrical mapping among coordinates of non-orthogonal frames that are intrinsic to the system; in such a case sensors represent (covariant) afferents and motor effectors represent (contravariant) motor efferents. The neuronal networks that perform such a function are viewed as general tensor transformations among different expressions and metric tensors determining the geometry of neural functional spaces. Although the non-orthogonality of a coordinate system does not impose a specific geometry on the space, this "Tensor Network Theory of brain function" allows for the possibility that the geometry is non-Euclidean. It is suggested that investigation of the non-Euclidean nature of the geometry is the key to understanding brain function and to interpreting neuronal network function. This paper outlines three contemporary applications of such a theoretical modeling approach. The first is the analysis and interpretation of multi-electrode recordings. The internal geometries of neural networks controlling external behavior of the skeletomuscle system is experimentally determinable using such multi-unit recordings. The second application of this geometrical approach to brain theory is modeling the control of posture and movement. A preliminary simulation study has been conducted with the aim of understanding the control of balance in a standing human. The model appears to unify postural control strategies that have previously been considered to be independent of each other. Third, this paper emphasizes the importance of the geometrical approach for the design and fabrication of neurocomputers that could be used in functional neuromuscular stimulation (FNS) for replacing lost motor control.

Review↗

A new constraint on galaxy–halo connections of [O ii ] emitters via HOD modelling with angular clustering and luminosity functions from the Subaru HSC survey

ABSTRACT Establishing a robust connection model between emission-line galaxies (ELGs) and their host dark haloes is of paramount importance in anticipation of upcoming redshift surveys. We propose a novel halo occupation distribution (HOD) framework that incorporates galaxy luminosity, a key observable reflecting ELG star-formation activity, into the galaxy occupation model. This innovation enables prediction of galaxy luminosity functions (LFs) and facilitates joint analyses using both angular correlation functions (ACFs) and LFs. Using physical information from luminosity, our model provides more robust constraints on the ELG–halo connection compared to methods relying solely on ACF and number density constraints. Our model was applied to $\rm [O\, {\small II}]$-emitting galaxies observed at two redshift slices at $z=1.193$ and 1.471 from the Subaru Hyper Suprime-Cam PDR2. Our model effectively reproduces observed ACFs and LFs observed in both redshift slices. Compared to the established Geach et al. HOD model, our approach offers a more nuanced depiction of ELG occupation across halo mass ranges, suggesting a more realistic representation of ELG environments. Our findings suggest that ELGs at $z\sim 1.4$ may evolve into Milky-Way-like galaxies, as their inferred halo masses evolve accordingly based on the extended Press–Schechter formalism, highlighting their role as potential building blocks in galaxy formation scenarios. By incorporating the LF as a constraint linking galaxy luminosity to halo properties, our HOD model provides a more precise understanding of ELG-host halo relationships. Furthermore, this approach facilitates the generation of high-quality ELG mock catalogues for future surveys. As the LF is a fundamental observable, our framework is potentially applicable to diverse galaxy populations, offering a versatile tool for analysing data from next-generation galaxy surveys.

Ishikawa, Shogo (ORCID:0000000221184211)↗

FOAM (Functional Ontology Assignments for Metagenomes): A Hidden Markov Model (HMM) database with environmental focus

A new functional gene database, FOAM (Functional Ontology Assignments for Metagenomes), was developed to screen environmental metagenomic sequence datasets. FOAM provides a new functional ontology dedicated to classify gene functions relevant to environmental microorganisms based on Hidden Markov Models (HMMs). Sets of aligned protein sequences (i.e. ‘profiles’) were tailored to a large group of target KEGG Orthologs (KOs) from which HMMs were trained. The alignments were checked and curated to make them specific to the targeted KO. Within this process, sequence profiles were enriched with the most abundant sequences available to maximize the yield of accurate classifier models. An associated functional ontology was built to describe the functional groups and hierarchy. FOAM allows the user to select the target search space before HMM-based comparison steps and to easily organize the results into different functional categories and subcategories. FOAM is publicly available at http://portal.nersc.gov/project/m1317/FOAM/.

54 ENVIRONMENTAL SCIENCES↗