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At least 1,081 records · Page 60

A Framework for Distributed Approximation of Moments with Higher-Order Derivatives through Automatic Differentiation

We present a framework for the distributed approximation of moments, enabling the evaluation of the uncertainty in a dynamical system. The first and second moment, mean, and variance are computed with up to third-order Taylor series expansion. The required derivatives for the expansion are generated automatically by automatic differentiation and propagated through an implicit time stepper. The computational kernels are the accumulation of the derivatives (Jacobian, Hessian, tensor) and the covariance matrix. We apply distributed parallelism to the Hessian or third-order tensor, and the user merely has to provide a function for the differential equation, thus achieving similar ease of use as Monte Carlo-based methods. We demonstrate our approach using with benchmarks on Theta, a KNL-based system at the Argonne Leadership Computing Facility.

Automatic Differentiation↗

Accelerating magnonic simulations with the pseudospectral Landau-Lifshitz equation

The pseudospectral Landau-Lifshitz (PS-LL) model can describe atomic-scale magnetic exchange interactions within a continuum framework. This is achieved by employing a convolution kernel that models the nonlocal interaction in a grid-independent manner. Even though the PS-LL was originally introduced to address atomic exchange, any nonlocal kernel can be modeled. In the field of magnonics, the dipole field is fundamental to describe the dispersion relation of magnons, the quasiparticle representation of angular momentum. Because dipole-dipole interactions are long-range, numerical approaches typically rely on convolutions. Here, we demonstrate that the PS-LL model can be used to perform magnonic simulations with a single convolution kernel derived from analytical solutions. We demonstrate a twofold increase in computational speed compared with the full dipole calculation. This approach is valid insofar as the excitations are linear, which is typically the case for magnons. Our results have the potential to accelerate magnonic research, particularly for the inverse design method, where several simulations must be performed to achieve the desired outcome.

Mathematics and computing↗

Probabalistic Modeling of Minibangs and Megabands (Final Report)

This project was original proposed as a fundamental advance in the treatment of probabilistic modeling as it applies to nuclear fission calculations of nuclear database inputs and produced particle distributions in heavy-ion collisions. However, funding decisions made within LLNL and the DOE Office of Science led to the project proceeding through three distinct stages. The first two, probabilistic calculations of the fission and jet energy loss relate follow directly from the proposed research. The fission task led to the development of a proof-of-principle Gaussian Process Emulator for time-dependent generator coordinate method (TDGCM) calculation for the fission of Pu-240. To study energy loss in heavy-ion collisions with a probabilistic model, we generated a training data set using the Pythia event generator superimposed on a heavy-ion background with a single quench-factor parameter. We then used kernel density estimation (KDE) to recover the distribution of quench-factors for a calibration data set. In the third stage, we proceeded to work through collaborations, collecting new data within the ATLAS experiment at the Large Hadron Collider (LHC), and further developing bayesian methodology within the Jet Energy-loss Tomography with a Statistically and Computationally Advanced Program Envelope (JETSCAPE) Collaboration.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

A Geometry Based Infra-Structure for Computational Analysis and Design

The computational steps traditionally taken for most engineering analysis suites (computational fluid dynamics (CFD), structural analysis, heat transfer and etc.) are: (1) Surface Generation -- usually by employing a Computer Assisted Design (CAD) system; (2) Grid Generation -- preparing the volume for the simulation; (3) Flow Solver -- producing the results at the specified operational point; (4) Post-processing Visualization -- interactively attempting to understand the results. For structural analysis, integrated systems can be obtained from a number of commercial vendors. These vendors couple directly to a number of CAD systems and are executed from within the CAD Graphical User Interface (GUI). It should be noted that the structural analysis problem is more tractable than CFD; there are fewer mesh topologies used and the grids are not as fine (this problem space does not have the length scaling issues of fluids). For CFD, these steps have worked well in the past for simple steady-state simulations at the expense of much user interaction. The data was transmitted between phases via files. In most cases, the output from a CAD system could go to Initial Graphics Exchange Specification (IGES) or Standard Exchange Program (STEP) files. The output from Grid Generators and Solvers do not really have standards though there are a couple of file formats that can be used for a subset of the gridding (i.e. PLOT3D data formats). The user would have to patch up the data or translate from one format to another to move to the next step. Sometimes this could take days. Specifically the problems with this procedure are:(1) File based -- Information flows from one step to the next via data files with formats specified for that procedure. File standards, when they exist, are wholly inadequate. For example, geometry from CAD systems (transmitted via IGES files) is defined as disjoint surfaces and curves (as well as masses of other information of no interest for the Grid Generator). This is particularly onerous for modern CAD systems based on solid modeling. The part was a proper solid and in the translation to IGES has lost this important characteristic. STEP is another standard for CAD data that exists and supports the concept of a solid. The problem with STEP is that a solid modeling geometry kernel is required to query and manipulate the data within this type of file. (2) 'Good' Geometry. A bottleneck in getting results from a solver is the construction of proper geometry to be fed to the grid generator. With 'good' geometry a grid can be constructed in tens of minutes (even with a complex configuration) using unstructured techniques. Adroit multi-block methods are not far behind. This means that a million node steady-state solution can be computed on the order of hours (using current high performance computers) starting from this 'good' geometry. Unfortunately, the geometry usually transmitted from the CAD system is not 'good' in the grid generator sense. The grid generator needs smooth closed solid geometry. It can take a week (or more) of interaction with the CAD output (sometimes by hand) before the process can begin. One way Communication. (3) One-way Communication -- All information travels on from one phase to the next. This makes procedures like node adaptation difficult when attempting to add or move nodes that sit on bounding surfaces (when the actual surface data has been lost after the grid generation phase). Until this process can be automated, more complex problems such as multi-disciplinary analysis or using the above procedure for design becomes prohibitive. There is also no way to easily deal with this system in a modular manner. One can only replace the grid generator, for example, if the software reads and writes the same files. Instead of the serial approach to analysis as described above, CAPRI takes a geometry centric approach. This makes the actual geometry (not a discretized version) accessible to all phases of the analysis. The connection to the geometry is made through an Application Programming Interface (API) and NOT a file system. This API isolates the top-level applications (grid generators, solvers and visualization components) from the geometry engine. Also this allows the replacement of one geometry kernel with another, without effecting these top-level applications. For example, if UniGraphics is used as the CAD package then Parasolid (UG's own geometry engine) can be used for all geometric queries so that no solid geometry information is lost in a translation. This is much better than STEP because when the data is queried, the same software is executed as used in the CAD system. Therefore, one analyzes the exact part that is in the CAD system. CAPRI uses the same idea as the commercial structural analysis codes but does not specify control. Software components of the CAD system are used, but the analysis suite, not the CAD operator, specifies the control of the software session. This also means that the license issues (may be) minimized and individuals need not have to know how to operate a CAD system in order to run the suite.

Haimes, Robert↗

Modelling the Lyman-α forest with Eulerian and SPH hydrodynamical methods

ABSTRACT We compare two state-of-the-art numerical codes to study the overall accuracy in modelling the intergalactic medium and reproducing Lyman-α forest observables for DESI and high-resolution data sets. The codes employ different approaches to solving both gravity and modelling the gas hydrodynamics. The first code, Nyx, solves the Poisson equation using the Particle-Mesh (PM) method and the Euler equations using a finite-volume method. The second code, CRK-HACC , uses a Tree-PM method to solve for gravity, and an improved Lagrangian smoothed particle hydrodynamics (SPH) technique, where fluid elements are modelled with particles, to treat the intergalactic gas. We compare the convergence behaviour of the codes in flux statistics as well as the degree to which the codes agree in the converged limit. We find good agreement overall with differences being less than observational uncertainties, and a particularly notable ≲1 per cent agreement in the 1D flux power spectrum. This agreement was achieved by applying a tessellation methodology for reconstructing the density in CRK-HACC instead of using an SPH kernel as is standard practice. We show that use of the SPH kernel can lead to significant and unnecessary biases in flux statistics; this is especially prominent at high redshifts, z ∼ 5, as the Lyman-α forest mostly comes from lower-density regions that are intrinsically poorly sampled by SPH particles.

79 ASTRONOMY AND ASTROPHYSICS↗

New method for analysis of X-ray computed tomography scans of TRISO fuel forms

X-ray computed tomography (XCT) is a powerful characterization tool that has been used for examination of both tristructural-isotropic (TRISO) coated particles and fuel forms. Rapid, nondestructive imaging of complete specimens by XCT provides significant characterization advantages in both speed and comprehensiveness over traditional materialographic methods. This paper discusses a method that has been developed to analyze XCT images of pebble fuel forms containing ~18,000 TRISO particles each. The XCT images are three-dimensional with contrast based on relative x-ray transparency. In the case of TRISO fuel forms, XCT image intensity distinguishes between the high-density kernel, the medium-density SiC, and the low-density matrix and carbon layers. Image analysis software has been developed to process XCT data sets to extract spatial distribution information, including particle nearest-neighbor distances, local packing fraction, and fuel-free zone thickness in TRISO fuel forms. Finally, although this type of high-resolution XCT analysis is likely not feasible as a quality control measurement for commercial TRISO fuel, it is highly useful in generating feedback for the development of fuel form fabrication processes.

11 NUCLEAR FUEL CYCLE AND FUEL MATERIALS↗

Machine learning approaches for structural and thermodynamic properties of a Lennard-Jones fluid

Predicting the functional properties of many molecular systems relies on understanding how atomistic interactions give rise to macroscale observables. However, current attempts to develop predictive models for the structural and thermodynamic properties of condensed-phase systems often rely on extensive parameter fitting to empirically selected functional forms whose effectiveness is limited to a narrow range of physical conditions. Here, we illustrate how these traditional fitting paradigms can be superseded using machine learning. Specifically, we use the results of molecular dynamics simulations to train machine learning protocols that are able to produce the radial distribution function, pressure, and internal energy of a Lennard-Jones fluid with increased accuracy in comparison to previous theoretical methods. The radial distribution function is determined using a variant of the segmented linear regression with the multivariate function decomposition approach developed by Craven et al. [J. Phys. Chem. Lett. 11, 4372 (2020)]. The pressure and internal energy are determined using expressions containing the learned radial distribution function and also a kernel ridge regression process that is trained directly on thermodynamic properties measured in simulation. The presented results suggest that the structural and thermodynamic properties of fluids may be determined more accurately through machine learning than through human-guided functional forms.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Extracting the spectrum of a flow by spatial filtering

We show that the spectrum of a flow field can be extracted within a local region by straightforward filtering in physical space. We find that for a flow with a certain level regularity, the filtering kernel must have a sufficient number of vanishing moments in order for the "filtering spectrum" to be meaningful. Our derivation follows a similar analysis by [1] for the wavelet spectrum, where we show that the filtering kernel has to have at least p vanishing moments in order to correctly extract a spectrum k (-alpha) with (alpha) less/equal to p + 2. For example, any ow with a spectrum shallower than k (-3) can be extracted by a straightforward average on grid-cells of a stencil. We construct two new "simple stencil" kernels, MI and MII, with only two and three fixed stencil weight coefficients, respectively, and that have sufficient vanishing moments to allow for extracting spectra steeper than k(-3). We demonstrate our results using synthetic fields, 2D turbulence from a Direct Numerical Simulation, and 3D turbulence from the JHU Database. Our method guarantees energy conservation and can be useful in both simulations and experiments when a straightforward Fourier analysis is not justified, such as within coherent flow structures covering non-rectangular regions or in geophysical flows on Earth's curved surface.

42 ENGINEERING↗

SU-F-J-133: Adaptive Radiation Therapy with a Four-Dimensional Dose Calculation Algorithm That Optimizes Dose Distribution Considering Breathing Motion

Purpose: To model patient motion and produce four-dimensional (4D) optimized dose distributions that consider motion-artifacts in the dose calculation during the treatment planning process. Methods: An algorithm for dose calculation is developed where patient motion is considered in dose calculation at the stage of the treatment planning. First, optimal dose distributions are calculated for the stationary target volume where the dose distributions are optimized considering intensity-modulated radiation therapy (IMRT). Second, a convolution-kernel is produced from the best-fitting curve which matches the motion trajectory of the patient. Third, the motion kernel is deconvolved with the initial dose distribution optimized for the stationary target to produce a dose distribution that is optimized in four-dimensions. This algorithm is tested with measured doses using a mobile phantom that moves with controlled motion patterns. Results: A motion-optimized dose distribution is obtained from the initial dose distribution of the stationary target by deconvolution with the motion-kernel of the mobile target. This motion-optimized dose distribution is equivalent to that optimized for the stationary target using IMRT. The motion-optimized and measured dose distributions are tested with the gamma index with a passing rate of >95% considering 3% dose-difference and 3mm distance-to-agreement. If the dose delivery per beam takes place over several respiratory cycles, then the spread-out of the dose distributions is only dependent on the motion amplitude and not affected by motion frequency and phase. This algorithm is limited to motion amplitudes that are smaller than the length of the target along the direction of motion. Conclusion: An algorithm is developed to optimize dose in 4D. Besides IMRT that provides optimal dose coverage for a stationary target, it extends dose optimization to 4D considering target motion. This algorithm provides alternative to motion management techniques such as beam-gating or breath-holding and has potential applications in adaptive radiation therapy.

60 APPLIED LIFE SCIENCES↗

Data-driven parameterization of the generalized Langevin equation

Significance The generalized Langevin equation (GLE) provides a precise description of coarse-grained variable dynamics in reduced dimension models. However, computation of the memory kernel poses a major challenge to the practical use of the GLE. This paper presents a data-driven approach to compute the memory kernel, relying on a hierarchy of parameterized rational approximations in terms of the Laplace transform, which can be expanded to arbitrarily high order as necessary. This parameterization makes it convenient to represent the GLE via an extended stochastic model where the memory term is eliminated by properly introducing auxiliary variables. The present method is well-suited for constructing reduced models for nonequilibrium properties of complex systems such as biomolecules, chemical reaction networks, and climate simulations.

97 MATHEMATICS AND COMPUTING↗

Effect of time-of-flight and point spread function modeling on detectability of myocardial defects in PET

Purpose: A study was designed to investigate the impact of time-of-flight (TOF) and point spread function (PSF) modeling on the detectability of myocardial defects. Methods: Clinical FDG-PET data were used to generate populations of defect-present and defect-absent images. Defects were incorporated at three contrast levels, and images were reconstructed by ordered subset expectation maximization (OSEM) iterative methods including ordinary Poisson, alone and with PSF, TOF, and PSF+TOF. Channelized Hotelling observer signal-to-noise ratio (SNR) was the surrogate for human observer performance. Results: For three iterations, 12 subsets, and no postreconstruction smoothing, TOF improved overall defect detection SNR by 8.6% as compared to its non-TOF counterpart for all the defect contrasts. Due to the slow convergence of PSF reconstruction, PSF yielded 4.4% less SNR than non-PSF. For reconstruction parameters (iteration number and postreconstruction smoothing kernel size) optimizing observer SNR, PSF showed larger improvement for faint defects. The combination of TOF and PSF improved mean detection SNR as compared to non-TOF and non-PSF counterparts by 3.0% and 3.2%, respectively. Conclusions: For typical reconstruction protocol used in clinical practice, i.e., less than five iterations, TOF improved defect detectability. In contrast, PSF generally yielded less detectability. For large number of iterations, TOF+PSF yields the best observer performance.

62 RADIOLOGY AND NUCLEAR MEDICINE↗

Grassmannian Diffusion Maps--Based Dimension Reduction and Classification for High-Dimensional Data

This work introduces the Grassmannian diffusion maps (GDMaps), a novel nonlinear dimensionality reduction technique that defines the affinity between points through their representation as low-dimensional subspaces corresponding to points on the Grassmann manifold. Here, the method is designed for applications, such as image recognition and data-based classification of constrained high-dimensional data where each data point itself is a high-dimensional object (i.e., a large matrix) that can be compactly represented in a lower-dimensional subspace. The GDMaps is composed of two stages. The first is a pointwise linear dimensionality reduction wherein each high-dimensional object is mapped onto the Grassmann manifold representing the low-dimensional subspace on which it resides. The second stage is a multipoint nonlinear kernel-based dimension reduction using diffusion maps to identify the subspace structure of the points on the Grassmann manifold. To this end, an appropriate Grassmannian kernel is used to construct the transition matrix of a random walk on a graph connecting points on the Grassmann manifold. Spectral analysis of the transition matrix yields low-dimensional Grassmannian diffusion coordinates embedding the data into a low-dimensional reproducing kernel Hilbert space. Further, a novel data classification/recognition technique is developed based on the construction of an overcomplete dictionary of reduced dimension whose atoms are given by the Grassmannian diffusion coordinates. Three examples are considered. First, a "toy" example shows that the GDMaps can identify an appropriate parametrization of structured points on the unit sphere. The second example demonstrates the ability of the GDMaps to revealing the intrinsic subspace structure of high-dimensional random field data. In the last ex- ample, a face recognition problem is solved considering face images subject to varying illumination conditions, changes in face expressions, and occurrence of occlusions. The technique presented high recognition rates (i.e., 95% in the best case) using a fraction of the data required by conventional methods.

42 ENGINEERING↗

Linear and nonlinear dynamic analysis by boundary element method

An advanced implementation of the direct boundary element method (BEM) applicable to free-vibration, periodic (steady-state) vibration and linear and nonlinear transient dynamic problems involving two and three-dimensional isotropic solids of arbitrary shape is presented. Interior, exterior, and half-space problems can all be solved by the present formulation. For the free-vibration analysis, a new real variable BEM formulation is presented which solves the free-vibration problem in the form of algebraic equations (formed from the static kernels) and needs only surface discretization. In the area of time-domain transient analysis, the BEM is well suited because it gives an implicit formulation. Although the integral formulations are elegant, because of the complexity of the formulation it has never been implemented in exact form. In the present work, linear and nonlinear time domain transient analysis for three-dimensional solids has been implemented in a general and complete manner. The formulation and implementation of the nonlinear, transient, dynamic analysis presented here is the first ever in the field of boundary element analysis. Almost all the existing formulation of BEM in dynamics use the constant variation of the variables in space and time which is very unrealistic for engineering problems and, in some cases, it leads to unacceptably inaccurate results. In the present work, linear and quadratic isoparametric boundary elements are used for discretization of geometry and functional variations in space. In addition, higher order variations in time are used. These methods of analysis are applicable to piecewise-homogeneous materials, such that not only problems of the layered media and the soil-structure interaction can be analyzed but also a large problem can be solved by the usual sub-structuring technique. The analyses have been incorporated in a versatile, general-purpose computer program. Some numerical problems are solved and, through comparisons with available analytical and numerical results, the stability and high accuracy of these dynamic analysis techniques are established.

Ahmad, Shahid↗

Simulation of macromolecule self-assembly in solution: A multiscale approach

One of the most common processes to produce polymer nanoparticles is to induce self-assembly by using the solvent-displacement method, in which the polymer is dissolved in a “good” solvent and the solution is then mixed with an “anti-solvent”. The polymer ability to self-assemble in solution is therefore determined by its structural and transport properties in solutions of the pure solvents and at the intermediate compositions. In this work, we focus on poly-ε-caprolactone (PCL) which is a biocompatible polymer that finds widespread application in the pharmaceutical and biomedical fields, performing simulation at three different scales using three different computational tools: full atomistic molecular dynamics (MD), population balance modeling (PBM) and computational fluid dynamics (CFD). Simulations consider PCL chains of different molecular weight in solution of pure acetone (good solvent), of pure water (anti-solvent) and their mixtures, and mixing at different rates and initial concentrations in a confined impinging jets mixer (CIJM). Our MD simulations reveal that the nano-structuring of one of the solvents in the mixture leads to an unexpected identical polymer structure irrespectively of the concentration of the two solvents. In particular, although in pure solvents the behavior of the polymer is, as expected, very different, at intermediate compositions, the PCL chain shows properties very similar to those found in pure acetone as a result of the clustering of the acetone molecules in the vicinity of the polymer chain. We derive an analytical expression to predict the polymer structural properties in solution at different solvent compositions and use it to formulate an aggregation kernel to describe the self-assembly in the CIJM via PBM and CFD. Simulations are eventually validated against experiments.

36 MATERIALS SCIENCE↗

HELIOSEISMOLOGY OF A REALISTIC MAGNETOCONVECTIVE SUNSPOT SIMULATION

We compare helioseismic travel-time shifts measured from a realistic magnetoconvective sunspot simulation using both helioseismic holography and time-distance helioseismology, and measured from real sunspots observed with the Helioseismic and Magnetic Imager instrument on board the Solar Dynamics Observatory and the Michelson Doppler Imager instrument on board the Solar and Heliospheric Observatory. We find remarkable similarities in the travel-time shifts measured between the methodologies applied and between the simulated and real sunspots. Forward modeling of the travel-time shifts using either Born or ray approximation kernels and the sound-speed perturbations present in the simulation indicates major disagreements with the measured travel-time shifts. These findings do not substantially change with the application of a correction for the reduction of wave amplitudes in the simulated and real sunspots. Overall, our findings demonstrate the need for new methods for inferring the subsurface structure of sunspots through helioseismic inversions.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Temporal ensemble learning of univariate methods for short term load forecasting

Short term load forecasting (STLF) is a fundamental component of demand response programs in smart grids. Recent literature has focused on complex neural networks and deep learning models for solving STLF. While these models work well for load forecasting with complex non-linear relationships, they have been shown to be less effective than simpler univariate models for STLF problems with under a 6 hours horizon. Given the lack of multivariate data (such as temperature) in many practical datasets, we need better univariate prediction models for STLF. By partitioning the dataset by temporal features, we develop a novel ensemble learning method that exploits daily seasonality in electricity consumption data to improve accuracy of popular univariate models. We train an ensemble of models from the dataset partitions. We develop a variety of methods, including Ridge Regression, to increase the robustness of the ensemble prediction. To show the effectiveness of our approach, we perform detailed evaluation using an aggregated user electricity consumption dataset collected by the Los Angeles Department of Water and Power (LADWP). We select four popular prediction algorithms in literature for our experiments, including Kernel Regression (KR), Support Vector Regression (SVR) and neural network approaches. We compare the performance of these algorithms applying our ensemble approach to training only one single model. Our approach leads to an 11.2% decrease in mean absolute percentage error (MAPE) and 21.3% decrease in root mean squared error (RMSE) over the single model approach for KR, and a 30% and 32.4% decrease in MAPE and RMSE respectively for SVR. These ensemble models also outperform the neural network approaches.

14 SOLAR ENERGY↗

Helioseismology of a Realistic Magnetoconvective Sunspot Simulation

We compare helioseismic travel-time shifts measured from a realistic magnetoconvective sunspot simulation using both helioseismic holography and time-distance helioseismology, and measured from real sunspots observed with the Helioseismic and Magnetic Imager instrument on board the Solar Dynamics Observatory and the Michelson Doppler Imager instrument on board the Solar and Heliospheric Observatory. We find remarkable similarities in the travel-time shifts measured between the methodologies applied and between the simulated and real sunspots. Forward modeling of the travel-time shifts using either Born or ray approximation kernels and the sound-speed perturbations present in the simulation indicates major disagreements with the measured travel-time shifts. These findings do not substantially change with the application of a correction for the reduction of wave amplitudes in the simulated and real sunspots. Overall, our findings demonstrate the need for new methods for inferring the subsurface structure of sunspots through helioseismic inversions.

Sun-interior↗