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DOE OSTI2017

Importance of turbulence-chemistry interactions at low temperature engine conditions

The role of turbulence-chemistry interaction in autoignition and flame stabilization is investigated for spray flames at low temperature combustion (LTC) conditions by performing high-fidelity three-dimensional computational fluid dynamics (CFD) simulations. A recently developed Tabulated Flamelet Model (TFM) is coupled with a large eddy simulation (LES) framework and validated across a range of Engine Combustion Network (ECN) ambient temperature conditions for n-dodecane fuel. High resolution grids with 0.0625 mm minimum cell size and 25 million total cell count are implemented using adaptive mesh refinement over the spray and combustion regions. Simulations with these grids and multiple LES realizations, with a 103 species n-dodecane mechanism show good agreement with experimental data for all the ambient conditions investigated. This modeling approach with the computational cost advantage of tabulated chemistry is then extended towards understanding the auto-ignition and flame stabilization at an ambient temperature of 750 K. These low temperature conditions lead to substantially higher ignition delays and flame liftoff lengths, and significantly leaner combustion compared to conventional high temperature diesel combustion. These conditions also require the simulations to span significantly larger temporal and spatial dimensions thereby increasing the computational cost. The TFM approach is able to capture autoignition and flame liftoff length at the low temperature conditions. Significant differences with respect to mixing, species formation and flame stabilization are observed under low temperature compared to conventional diesel combustion. At higher ambient temperatures, formation of formaldehyde is observed in the rich region (phi > 1) followed by the formation of OH in the stoichiometric regions. Under low temperature conditions, formaldehyde is observed to form at leaner regions followed by the onset of OH formation in significantly lean regions of the flame. Qualitative differences between species formation and transient flame development for the high and low temperature conditions are presented. The two stage ignition process is further investigated by studying the species formation in mixture fraction space by solving 1D flamelet equations for different scalar dissipation rates and homogeneous reactor assumption. Results show that scalar dissipation causes these radicals to diffuse within the mixture fraction space. As a result, this significantly enhances ignition and plays a dominant role at such low temperature conditions which cannot be captured by the homogeneous reaction assumption based model.

33 ADVANCED PROPULSION SYSTEMS↗

DOE OSTI2014

A Multi-Contact, Low Capacitance HPGe Detector for High Rate Gamma Spectroscopy

The detection, identification and non-destructive assay of special nuclear materials and nuclear fission by-products are critically important activities in support of nuclear non-proliferation programs. Both national and international nuclear safeguard agencies recognize that current accounting methods for spent nuclear fuel are inadequate from a safeguards perspective. Radiation detection and analysis by gamma-ray spectroscopy is a key tool in this field, but no instrument exists that can deliver the required performance (energy resolution and detection sensitivity) in the presence of very high background count rates encountered in the nuclear safeguards arena. The work of this project addresses this critical need by developing a unique gamma-ray detector based on high purity germanium that has the previously unachievable property of operating in the 1 million counts-per-second range while achieving state-of-the-art energy resolution necessary to identify and analyze the isotopes of interest. The technical approach was to design and fabricate a germanium detector with multiple segmented electrodes coupled to multi-channel high rate spectroscopy electronics. Dividing the germanium detector’s signal electrode into smaller sections offers two advantages; firstly, the energy resolution of the detector is potentially improved, and secondly, the detector is able to operate at higher count rates. The design challenges included the following; determining the optimum electrode configuration to meet the stringent energy resolution and count rate requirements; determining the electronic noise (and therefore energy resolution) of the completed system after multiple signals are recombined; designing the germanium crystal housing and vacuum cryostat; and customizing electronics to perform the signal recombination function in real time. In this phase I work, commercial off-the-shelf electrostatic modeling software was used to develop the segmented germanium crystal geometry, which underwent several iterations before an optimal electrode configuration was found. The model was tested and validated against real-world measurements with existing germanium detectors. Extensive modeling of electronic noise was conducted using established formulae, and real-world measurements were performed on candidate front-end electronic components. This initial work proved the feasibility of the design with respect to expected high count rate and energy resolution performance. Phase I also delivered the mechanical design of the detector housing and vacuum cryostat to be built in Phase II. Finally, a Monte Carlo simulation was created to show the response of the complete design to a Cs-137 source. This development presents a significant advance for nuclear safeguards instrumentation with increased speed and accuracy of detection and identification of special nuclear materials. Other significant applications are foreseen for a gamma-ray detector that delivers high energy resolution (1keV FWHM noise) at high count rate (1 Mcps), especially in the areas of physics research and materials analysis.

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗

DOE OSTI2017

THE CONTRIBUTION OF FERMI -2LAC BLAZARS TO DIFFUSE TEV–PEV NEUTRINO FLUX

The recent discovery of a diffuse cosmic neutrino flux extending up to PeV energies raises the question of which astrophysical sources generate this signal. Blazars are one class of extragalactic sources which may produce such high-energy neutrinos. We present a likelihood analysis searching for cumulative neutrino emission from blazars in the 2nd Fermi -LAT AGN catalog (2LAC) using IceCube neutrino data set 2009-12, which was optimized for the detection of individual sources. In contrast to those in previous searches with IceCube, the populations investigated contain up to hundreds of sources, the largest one being the entire blazar sample in the 2LAC catalog. No significant excess is observed, and upper limits for the cumulative flux from these populations are obtained. These constrain the maximum contribution of 2LAC blazars to the observed astrophysical neutrino flux to 27% or less between around 10 TeV and 2 PeV, assuming the equipartition of flavors on Earth and a single power-law spectrum with a spectral index of −2.5. We can still exclude the fact that 2LAC blazars (and their subpopulations) emit more than 50% of the observed neutrinos up to a spectral index as hard as −2.2 in the same energy range. Our result takes into account the fact that the neutrino source count distribution is unknown, and it does not assume strict proportionality of the neutrino flux to the measured 2LAC γ -ray signal for each source. Additionally, we constrain recent models for neutrino emission by blazars.

79 ASTRONOMY AND ASTROPHYSICS↗

DOE OSTI2014

Two-state theory of binned photon statistics for a large class of waiting time distributions and its application to quantum dot blinking

A theoretical method is proposed for the calculation of the photon counting probability distribution during a bin time. Two-state fluorescence and steady excitation are assumed. A key feature is a kinetic scheme that allows for an extensive class of stochastic waiting time distribution functions, including power laws, expanded as a sum of weighted decaying exponentials. The solution is analytic in certain conditions, and an exact and simple expression is found for the integral contribution of “bright” and “dark” states. As an application for power law kinetics, theoretical results are compared with experimental intensity histograms from a number of blinking CdSe/ZnS quantum dots. The histograms are consistent with distributions of intensity states around a “bright” and a “dark” maximum. A gap of states is also revealed in the more-or-less flat inter-peak region. The slope and to some extent the flatness of the inter-peak feature are found to be sensitive to the power-law exponents. Possible models consistent with these findings are discussed, such as the combination of multiple charging and fluctuating non-radiative channels or the multiple recombination center model. A fitting of the latter to experiment provides constraints on the interaction parameter between the recombination centers. Further extensions and applications of the photon counting theory are also discussed.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

DOE OSTI2019

Concordance and discordance in cosmology

The success of present and future cosmological studies is tied to the ability to detect discrepancies in complex data sets within the framework of a cosmological model. Tensions caused by the presence of unknown systematic effects need to be isolated and corrected to increase the overall accuracy of parameter constraints, while discrepancies due to new physical phenomena need to be promptly identified. We develop a full set of estimators of internal and mutual agreement and disagreement, whose strengths complement each other. These estimators take into account the effect of prior information and compute the statistical significance of both tensions and confirmatory biases. The estimators that we present optimally weight all parameter space directions that are either fully constrained by the data or the prior, allowing for complete and fair degree of freedom counting. We apply them to a wide range of state-of-the-art cosmological probes and show that these estimators can be easily used, regardless of model and data complexity. Here, we derive a series of results that show that discrepancies indeed arise within the standard ΛCDM model. Several of them exceed the probability threshold of 95% and deserve a dedicated effort to understand their origin.

79 ASTRONOMY AND ASTROPHYSICS↗

NASA NTRSDate not supplied

Lunar-surface UV Photometric Investigation of Exospheres (LUPINE): Thermal Modeling of Payload in a Relevant Daylit Environment

Direct upward remote sensing of the moon’s exosphere from a surface vantage can address production of water-related lunar volatiles as well as their exospheric loss, ballistic transport, and ultimate adsorption in permanently shadowed regions (PSRs). Far UV (FUV) dayside measurements of atomic oxygen, liberated from regolith by energetic solar protons and micrometeorite impact, can provide critical insight into the endogenic lunar water cycle by constraining total column density [O] at site of production. A notional Lunar-surface UV Photometric Investigation of Exospheres (LUPINE) instrument is designed to exploit solar-pumped atomic oxygen fluorescence at 130.4-nm, in a manner similar to the Apollo 17 UV Spectrometer (UVS) experiment [Fastie 1973; Feldman and Morrison, 1991] and the LRO Lyman-alpha Mapping Project (LAMP) spectrograph [Cook et al., 2013], by implementing a zenith-directed FUV photometer from the lunar surface at low (± 10°) selenographic latitude during the lunar day. Atomic oxygen production from solar energetic particle impact sources is thought to maximize in near solar noon [Sarantos et al., 2012], and the lander-embedded zenith-directed LUPINE photometer, in contrast to UVS and LAMP twilight measurements from orbit, can potentially capture the full column abundance of lunar regolith liberated oxygen. Herein we describe adaptation of FUV reflective optics, pulse-counting electronics, and scattered-light-suppression technologies developed for LEO FUV photometry for the challenging thermal environment of the daylit lunar surface. Preliminary thermal modeling and TVAC measurements of heritage FUV photometer components suggests that, if allowed to shed ~8W of waste heat into the bus of a reference Commercial Lunar Payload Services (CLPS) lander, the LUPINE photometer will be kept sufficiently cool to limit dark current to less than 20 counts/s. This level of dark signal enables an OI 130.4-nm 3-sigma detection threshold of ~1 mR for assumed 2-hour integrations.

Lunar UV Photometer↗

DOE OSTI2013

Collimator design for a dedicated molecular breast imaging-guided biopsy system: Proof-of-concept

Purpose: Molecular breast imaging (MBI) is a dedicated nuclear medicine breast imaging modality that employs dual-head cadmium zinc telluride (CZT) gamma cameras to functionally detect breast cancer. MBI has been shown to detect breast cancers otherwise occult on mammography and ultrasound. Currently, a MBI-guided biopsy system does not exist to biopsy such lesions. Our objective was to consider the utility of a novel conical slant-hole (CSH) collimator for rapid (<1 min) and accurate monitoring of lesion position to serve as part of a MBI-guided biopsy system. Methods: An initial CSH collimator design was derived from the dimensions of a parallel-hole collimator optimized for MBI performed with dual-head CZT gamma cameras. The parameters of the CSH collimator included the collimator height, cone slant angle, thickness of septa and cones of the collimator, and the annular areas exposed at the base of the cones. These parameters were varied within the geometric constraints of the MBI system to create several potential CSH collimator designs. The CSH collimator designs were evaluated using Monte Carlo simulations. The model included a breast compressed to a thickness of 6 cm with a 1-cm diameter lesion located 3 cm from the collimator face. The number of particles simulated was chosen to represent the count density of a low-dose, screening MBI study acquired with the parallel-hole collimator for 10 min after a {approx}150 MBq (4 mCi) injection of Tc-99m sestamibi. The same number of particles was used for the CSH collimator simulations. In the resulting simulated images, the count sensitivity, spatial resolution, and accuracy of the lesion depth determined from the lesion profile width were evaluated. Results: The CSH collimator design with default parameters derived from the optimal parallel-hole collimator provided 1-min images with error in the lesion depth estimation of 1.1 {+-} 0.7 mm and over 21 times the lesion count sensitivity relative to 1-min images acquired with the current parallel-hole collimator. Sensitivity was increased via more vertical cone slant angles, larger annular areas, thinner cone walls, shorter cone heights, and thinner radiating septa. Full width at half maximum trended in the opposite direction as sensitivity for all parameters. There was less error in the depth estimates for less vertical slant angles, smaller annular areas, thinner cone walls, cone heights near 1 cm, and generally thinner radiating septa. Conclusions: A Monte Carlo model was used to demonstrate the feasibility of a CSH collimator design for rapid biopsy application in molecular breast imaging. Specifically, lesion depth of a 1-cm diameter lesion positioned in the center of a typical breast can be estimated with error of less than 2 mm using circumferential count profiles of images acquired in 1 min.

60 APPLIED LIFE SCIENCES↗

NASA NTRS2016

Assessing the Transferability of Statistical Predictive Models for Leaf Area Index Between Two Airborne Discrete Return LiDAR Sensor Designs Within Multiple Intensely Managed Loblolly Pine Forest Locations in the South-Eastern USA

Leaf area is an important forest structural variable which serves as the primary means of mass and energy exchange within vegetated ecosystems. The objective of the current study was to determine if leaf area index (LAI) could be estimated accurately and consistently in five intensively managed pine plantation forests using two multiple-return airborne LiDAR datasets. Field measurements of LAI were made using the LiCOR LAI2000 and LAI2200 instruments within 116 plots were established of varying size and within a variety of stand conditions (i.e. stand age, nutrient regime and stem density) in North Carolina and Virginia in 2008 and 2013. A number of common LiDAR return height and intensity distribution metrics were calculated (e.g. average return height), in addition to ten indices, with two additional variants, utilized in the surrounding literature which have been used to estimate LAI and fractional cover, were calculated from return heights and intensity, for each plot extent. Each of the indices was assessed for correlation with each other, and was used as independent variables in linear regression analysis with field LAI as the dependent variable. All LiDAR derived metrics were also entered into a forward stepwise linear regression. The results from each of the indices varied from an R2 of 0.33 (S.E. 0.87) to 0.89 (S.E. 0.36). Those indices calculated using ratios of all returns produced the strongest correlations, such as the Above and Below Ratio Index (ABRI) and Laser Penetration Index 1 (LPI1). The regression model produced from a combination of three metrics did not improve correlations greatly (R2 0.90; S.E. 0.35). The results indicate that LAI can be predicted over a range of intensively managed pine plantation forest environments accurately when using different LiDAR sensor designs. Those indices which incorporated counts of specific return numbers (e.g. first returns) or return intensity correlated poorly with field measurements. There were disparities between the number of different types of returns and intensity values when comparing the results from two LiDAR sensors, indicating that predictive models developed using such metrics are not transferable between datasets with different acquisition parameters. Each of the indices were significantly correlated with one another, with one exception (LAI proxy), in particular those indices calculated from all returns, which indicates similarities in information content for those indices. It can then be argued that LiDAR indices have reached a similar stage in development to those calculated from optical-spectral sensors, but which offer a number of advantages, such as the reduction or removal of saturation issues in areas of high biomass.

Sumnall, Matthew↗

NASA NTRS2000

The Effects of Blade Count on Boundary Layer Development in a Low-Pressure Turbine

Experimental data from jet-engine tests have indicated that turbine efficiencies at takeoff can be as much as two points higher than those at cruise conditions. Recent studies have shown that Reynolds number effects contribute to the lower efficiencies at cruise conditions. In the current study numerical simulations have been performed to study the boundary layer development in a two-stage low-pressure turbine, and to evaluate the models available for low Reynolds number flows in turbomachinery. In a previous study using the same geometry the predicted time-averaged boundary layer quantities showed excellent agreement with the experimental data, but the predicted unsteady results showed only fair agreement with the experimental data. It was surmised that the blade count approximation used in the numerical simulations generated more unsteadiness than was observed in the experiments. In this study a more accurate blade approximation has been used to model the turbine, and the method of post-processing the boundary layer information has been modified to more closely resemble the process used in the experiments. The predicted results show improved agreement with the unsteady experimental data.

Dorney, Daniel J.↗

NASA NTRS2001

Radiometry Measurements of Mars at 1064 nm Using the Mars Orbiter Laser Altimeter

Measurements by the Mars Orbiter Laser Altimeter (MOLA) on board the Mars Global Surveyor (MGS) may be used to provides a radiometric measurement of Mars in addition to the topographic measurement. We will describe the principle of operation, a mathematical model, and the receiver calibration in this presentation. MOLA was designed primarily to measure Mars topography, surface roughness end the bidirectional reflectance to the laser beam. To achieve the highest sensitivity the receiver detection threshold is dynamically adjusted to be as low as possible while keeping a predetermined false alarm rate. The average false alarm rate 29 monitored in real time on board MOLA via a noise counter, whose output is fed to the threshold control loop. The false alarm rate at a given threshold is a function of the detector output noise which is the sum of the photo detector, shot noise due to the background light seen by the detector and the dark noise. A mathematical model has been developed that can be used to numerically solve for the optical background power given the MOLA threshold setting and the average noise count. The radiance of Mars can then be determined by dividing the optical power by the solid angle subtended by the MOLA receiver, the receiver optical band-width, end the Mars surface area within the receiver field of view. The phase angle which is the sun-Mars-MOLA angle is available from the MGS database. MOLA also measures simultaneously the bidirectional reflectance of Mars vie its 106-lum loser beam at nadir with nearly zero phase angle. The optical bandwidth of the MOLA receiver is 2um full width at half maximum (FWHM) and centered at 106-lum. The receiver field of view is 0.95mrad FWHM. The nominated spacecraft altitude is 100km and the ground track speed is about 3km/s. Under normal operation, the noise counter are read and the threshold levels are updated at 1Hz. The receiver sensitivity is limited by the detector dark noise to about 0.1nW, which corresponds to less than 2% the maximum radiance during daytime from the brightest area on Mars. The results from the mathematical model agree well with the prelaunch measurements at several calibrated optical power levels. The radiance of sunlit Mars estimated with this technique correlates well with the measurement from the MGS. Thermal Emission Spectrometer (TES) and the Hubble Space Telescope at similar wavelength.

Sun, Xiao-Li↗

DOE OSTI2012

Measuring the neutrino mass from future wide galaxy cluster catalogues

We present forecast errors on a wide range of cosmological parameters obtained from a photometric cluster catalogue of a future wide-field Euclid-like survey. We focus in particular on the total neutrino mass as constrained by a combination of the galaxy cluster number counts and correlation function. For the latter we consider only the shape information and the Baryon Acoustic Oscillations (BAO), while marginalising over the spectral amplitude and the redshift space distortions. In addition to the cosmological parameters of the standard ΛCDM+ν model we also consider a non-vanishing curvature, and two parameters describing a redshift evolution for the dark energy equation of state. For completeness, we also marginalise over a set of ''nuisance'' parameters, representing the uncertainties on the cluster mass determination. We find that combining cluster counts with power spectrum information greatly improves the constraining power of each probe taken individually, with errors on cosmological parameters being reduced by up to an order of magnitude. In particular, the best improvements are for the parameters defining the dynamical evolution of dark energy, where cluster counts break degeneracies. Moreover, the resulting error on neutrino mass is at the level of σ(M{sub ν}) ∼ 0.9 eV, comparable with that derived from present Lyα forest measurements and Cosmic Microwave background (CMB) data in the framework of a non-flat Universe. Further adopting Planck priors and reducing the number of free parameters to a ΛCDM+ν cosmology allows to place constraints on the total neutrino mass of σ(M{sub ν}) ∼ 0.08 eV, close to the lower bound enforced by neutrino oscillation experiments. Finally, in the optimistic case where uncertainties in the calibration of the mass-observable relation were so small to be neglected, the combination of Planck priors with cluster counts and power spectrum would constrain the total neutrino mass down to σ(M{sub ν}) ∼ 0.034 eV, i.e. the minimum neutrino mass predicted by oscillation experiments would be detected in a ΛCDM framework. We thus show that galaxy clusters from future wide galaxy surveys will be an excellent tool for studying cosmology and fundamental physics.

79 ASTRONOMY AND ASTROPHYSICS↗

DOE OSTI2014

Toward the standard population synthesis model of the X-ray background: Evolution of X-ray luminosity and absorption functions of active galactic nuclei including Compton-thick populations

We present the most up to date X-ray luminosity function (XLF) and absorption function of active galactic nuclei (AGNs) over the redshift range from 0 to 5, utilizing the largest, highly complete sample ever available obtained from surveys performed with Swift/BAT, MAXI, ASCA, XMM-Newton, Chandra, and ROSAT. The combined sample, including that of the Subaru/XMM-Newton Deep Survey, consists of 4039 detections in the soft (0.5-2 keV) and/or hard (>2 keV) band. We utilize a maximum likelihood method to reproduce the count rate versus redshift distribution for each survey, by taking into account the evolution of the absorbed fraction, the contribution from Compton-thick (CTK) AGNs, and broadband spectra of AGNs, including reflection components from tori based on the luminosity- and redshift-dependent unified scheme. We find that the shape of the XLF at z ∼ 1-3 is significantly different from that in the local universe, for which the luminosity-dependent density evolution model gives much better description than the luminosity and density evolution model. These results establish the standard population synthesis model of the X-ray background (XRB), which well reproduces the source counts, the observed fractions of CTK AGNs, and the spectrum of the hard XRB. The number ratio of CTK AGNs to the absorbed Compton-thin (CTN) AGNs is constrained to be ≈0.5-1.6 to produce the 20-50 keV XRB intensity within present uncertainties, by assuming that they follow the same evolution as CTN AGNs. The growth history of supermassive black holes is discussed based on the new AGN bolometric luminosity function.

79 ASTRONOMY AND ASTROPHYSICS↗

DOE OSTI2026

Automated Bacterial Identification and Morphological Feature Analysis in Low‐Dose Cryo‐EM Using YOLOv11

Bacteria rapidly adapt to environmental cues through morphological and ultrastructural changes that correlate with physiology and behavior. Cryogenic transmission electron microscopy (cryo‐TEM) can capture these phenotypic changes in near‐native, vitrified states, but manual analysis of low‐dose micrographs is labor intensive and limits throughput. Here, we present an end‐to‐end workflow that combines low‐dose cryo‐TEM imaging with a YOLOv11‐based instance‐segmentation model to automatically identify bacteria and quantify key structural features directly from the micrographs. This workflow enables (i) robust bacterial localization and counting from low‐magnification atlas/montage images, (ii) automated measurements of cell‐envelope (outer–inner membrane) thickness and anisotropy from higher‐magnification views, and (iii) detection and quantification of bacteria–flagella interactions, including overlap length and curvature metrics for interacting versus noninteracting flagella. Using Pantoea sp. YR343 grown under distinct media conditions, we show that the automated measurements agree with manual annotations while substantially reducing analysis time. Together, these tools provide a practical framework for scalable bacterial identification and quantitative phenotyping in low‐dose cryo‐TEM datasets and establish a foundation for extending cryo‐TEM image analysis toward higher‐throughput studies of microbial heterogeneity and biointerfaces.

YOLOv11↗

DOE OSTI2014

Identifying dark matter interactions in monojet searches

We study the discrimination of quark-initiated jets from gluon-initiated jets in monojet searches for dark matter using the technique of averaged jet energy profiles. We demonstrate our results in the context of effective field theories of dark matter interactions with quarks and gluons, but our methods apply more generally to a wide class of models. Different effective theories of dark matter and the standard model backgrounds each have a characteristic quark/gluon fraction for the leading jet. When used in conjunction with the traditional cut-and-count monojet search, the jet energy profile can be used to set stronger bounds on contact interactions of dark matter. In the event of a discovery of a monojet excess at the 14 TeV LHC, contact interactions between dark matter with quarks or with gluons can be differentiated at the 95% confidence level. For a given rate at the LHC, signal predictions at direct detection experiments for different dark matter interactions can span five orders of magnitude. Lastly, the ability to identify these interactions allows us to make a tighter connection between LHC searches and direct detection experiments.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

DOE OSTI2021

Data-driven optimized control of the COVID-19 epidemics

Optimizing the impact on the economy of control strategies aiming at containing the spread of COVID-19 is a critical challenge. We use daily new case counts of COVID-19 patients reported by local health administrations from different Metropolitan Statistical Areas (MSAs) within the US to parametrize a model that well describes the propagation of the disease in each area. We then introduce a time-varying control input that represents the level of social distancing imposed on the population of a given area and solve an optimal control problem with the goal of minimizing the impact of social distancing on the economy in the presence of relevant constraints, such as a desired level of suppression for the epidemics at a terminal time. We find that with the exception of the initial time and of the final time, the optimal control input is well approximated by a constant, specific to each area, which contrasts with the implemented system of reopening ‘in phases’. For all the areas considered, this optimal level corresponds to stricter social distancing than the level estimated from data. Proper selection of the time period for application of the control action optimally is important: depending on the particular MSA this period should be either short or long or intermediate. We also consider the case that the transmissibility increases in time (due e.g. to increasingly colder weather), for which we find that the optimal control solution yields progressively stricter measures of social distancing. We finally compute the optimal control solution for a model modified to incorporate the effects of vaccinations on the population and we see that depending on a number of factors, social distancing measures could be optimally reduced during the period over which vaccines are administered to the population.

60 APPLIED LIFE SCIENCES↗

DOE OSTI2014

Synchronous digitization for high dynamic range lock-in amplification in beam-scanning microscopy

Digital lock-in amplification (LIA) with synchronous digitization (SD) is shown to provide significant signal to noise (S/N) and linear dynamic range advantages in beam-scanning microscopy measurements using pulsed laser sources. Direct comparisons between SD-LIA and conventional LIA in homodyne second harmonic generation measurements resulted in S/N enhancements consistent with theoretical models. SD-LIA provided notably larger S/N enhancements in the limit of low light intensities, through the smooth transition between photon counting and signal averaging developed in previous work. Rapid beam scanning instrumentation with up to video rate acquisition speeds minimized photo-induced sample damage. The corresponding increased allowance for higher laser power without sample damage is advantageous for increasing the observed signal content.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

DOE OSTI2021

Blinking statistics and molecular counting in direct stochastic reconstruction microscopy (dSTORM)

Abstract Motivation Many recent advancements in single-molecule localization microscopy exploit the stochastic photoswitching of fluorophores to reveal complex cellular structures beyond the classical diffraction limit. However, this same stochasticity makes counting the number of molecules to high precision extremely challenging, preventing key insight into the cellular structures and processes under observation. Results Modelling the photoswitching behaviour of a fluorophore as an unobserved continuous time Markov process transitioning between a single fluorescent and multiple dark states, and fully mitigating for missed blinks and false positives, we present a method for computing the exact probability distribution for the number of observed localizations from a single photoswitching fluorophore. This is then extended to provide the probability distribution for the number of localizations in a direct stochastic optical reconstruction microscopy experiment involving an arbitrary number of molecules. We demonstrate that when training data are available to estimate photoswitching rates, the unknown number of molecules can be accurately recovered from the posterior mode of the number of molecules given the number of localizations. Finally, we demonstrate the method on experimental data by quantifying the number of adapter protein linker for activation of T cells on the cell surface of the T-cell immunological synapse. Availability and implementation Software and data available at https://github.com/lp1611/mol_count_dstorm. Supplementary information Supplementary data are available at Bioinformatics online.

Patel, Lekha↗

DOE OSTI2019

Constraining the thermally pulsing asymptotic giant branch phase with resolved stellar populations in the Small Magellanic Cloud

The thermally-pulsing asymptotic giant branch (TP-AGB) experienced by low- andintermediate-mass stars is one of the most uncertain phases of stellar evolution and themodels need to be calibrated with the aid of observations. To this purpose, we couplehigh-quality observations of resolved stars in the Small Magellanic Cloud (SMC) withdetailed stellar population synthesis simulations computed with theTRILEGALcode.The strength of our approach relies on the detailed spatially-resolved star formationhistory of the SMC, derived from the deep near-infrared photometry of the VISTAsurvey of the Magellanic Clouds, as well as on the capability to quickly and accuratelyexplore a wide variety of parameters and effects with theCOLIBRIcode for the TP-AGB evolution. Adopting a well-characterized set of observations – star counts andluminosity functions – we set up a calibration cycle along which we iteratively changea few key parameters of the TP-AGB models until we eventually reach a good fit tothe observations. Our work leads to identify two best-fitting models that mainly differin the efficiencies of the third dredge-up and mass loss in TP-AGB stars with initialmasses larger than about 3 M. On the basis of these calibrated models we providea full characterization of the TP-AGB stellar population in the SMC in terms of stel-lar parameters (initial masses, C/O ratios, carbon excess, mass-loss rates). Extensivetables of isochrones including these improved models are publicly available

79 ASTRONOMY AND ASTROPHYSICS↗