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At least 1,081 records · Page 60

Effective protein-protein interaction from structure factor data of a lysozyme solution

We report the determination of an effective protein-protein central potential for a lysozyme solution, obtained from the direct inversion of the total structure factor of the system, as extracted from small angle neutron scattering. The inversion scheme rests on a hypernetted-chain relationship between the effective potential and the structural functions, and is preliminarily tested for the case of a Lennard-Jones interaction. The characteristics of our potential are discussed in comparison with current models of effective interactions in complex fluids. The phase behavior predictions are also investigated.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Effect of Silicon, Carbon, and Sulfur on Structure of Liquid Iron and Implications for Structure-Property Relations in Liquid Iron-Light Element Alloys

Planetary cores are considered to be composed of iron (Fe) and light elements. Extensive studies on structure and properties of crystalline Fe–light element alloys have been carried out to discuss composition and structure of the solid inner core. In contrast, structure and properties of liquid Fe–light element alloys, which are important to discuss nature and dynamics of the liquid outer core, remain poorly understood. Here we conducted series of liquid structure measurements to systematically understand effect of silicon (Si), carbon (C), and sulfur (S) on structure of liquid Fe. We found that incorporation of Si in liquid Fe shortens the nearest (r 1 ) and second (r 2 ) neighbor distances, while incorporation of C and small amount of S expands these distances. The different structural behavior is interpreted in view of different light–element incorporation mechanisms: substitutional incorporation of Si and interstitial incorporation of C and S. All light elements lower density of liquid Fe regardless of shortening or expansion of the r 1 and r 2 distances, while P–wave velocities of liquid Fe–light element alloys show linear increase with shortening of the r 1 and r 2 . The different light–element incorporation behavior in the structure of liquid Fe and the resultant variation in the properties of liquid Fe–light element alloys should be important in understanding behavior of liquid Fe–light element alloys in the planetary cores.

58 GEOSCIENCES↗

Effect of Molybdenum Content on Structural, Mechanical, and Tribological Properties of Hot Isostatically Pressed β-Type Titanium Alloys for Orthopedic Applications

Aiming to develop alloys with better properties for orthopedic applications, the focus of the present research was to evaluate the effect of Mo at.% content on structural, mechanical, and tribological properties of hot isostatically pressed Ti-xMo (x = 4, 8, 12, 15, and 20 at.%) alloys. The structural evolution, mechanical properties, and tribological behavior of the nanostructured Ti-xMo alloys were evaluated using x-ray diffraction, scanning electron microscope, and ball-on-disk tribometer. Wear tests were conducted under different applied loads of 2, 8, and 16 N. Experimental results indicated that the structural evolution and morphological changes of the milled alloys were sensitive to their molybdenum (Mo) content. The morphological characterization showed that the crystallite size and the particle size decreased with increasing Mo content (at.%) reaching the lowest values of 27 and 26 nm in the case of Ti-15Mo and Ti-20Mo, respectively. On the other hand, the coefficient of friction and wear rates were found to be decreasing with increasing Mo content.

36 MATERIALS SCIENCE↗

Initial development for the introduction of provisions for irradiation effects in Division 5 rules

Heat pipe microreactor concept involves the use of a solid core block to encapsulate the nuclear fuel and the passive extraction of heat from the core block to the heat exchanger block by advanced heat pipes. The core block is a key component of the heat pipe microreactor design. It integrates the functions of reactor vessel, core structural components and fuel cladding of traditional Gen IV advanced reactor designs into one single structure. The effects of irradiation on the structural failure modes are outside the scope of the rules of the ASME Boiler and Pressure Vessel Code, Section III, Division 5, Subsection HB, Subpart B for metallic Class A components. Methods to account for the irradiation effect were investigated in order to develop design methods that can be applied to the core block design in the heat pipe microreactor. This report presents an initial development of an approach to account for the irradiation effects in the design rules.

22 GENERAL STUDIES OF NUCLEAR REACTORS↗

Effects of naturally occurring charged mutations on the structure, stability, and binding of the Pin1 WW domain

Pin1 is a peptidyl-prolyl cis-trans isomerase, whose WW domain specifically recognizes the pSer/Thr-Pro motif. Pin1 is involved in multiple phosphorylation events that regulate the activities of various substrates, and Pin1 deregulation has been reported in various diseases, including cancer and Alzheimer's disease. The WW domain of Pin1 has been used as a small model protein to investigate the folding mechanisms of the β-sheet structure by studying the effect of mutations or its naturally occurring variants. However, only a few studies have investigated the structure and binding of Pin1 WW mutants. In the present work, two naturally occurring Pin1 WW variants, namely, G20D and S16R, derived from the cynomolgus monkey and African green monkey, respectively, were selected to investigate the influence of charge mutation on the structure, stability, and binding properties of the Pin1 WW domain. Analysis using a combination of nuclear magnetic resonance (NMR) and chemical shift-based calculations revealed that the G20D and S16R mutants had high structural similarity to the wild-type Pin1 WW domain. However, the presence of a charge mutation significantly decreased the stability of the Pin1 WW domain. Both the wild-type and G20D forms of the Pin1 WW domain utilized a three-site mode to bind to a phosphorylated Tau peptide, pT231, whereas the S16R mutant binds to the pT231 peptide either in a non-specific manner or through a totally different binding mechanism. Correspondingly, the wild-type and two mutant Pin1 WW domains showed different binding affinities to the Tau phosphopeptide. Considering that the WW domain participates in the catalytic activity of the Pin1 isomerase, our study represents a novel approach for studying Pin1 function through the analysis of its naturally occurring mutants. - Highlights: • G20D and S16R Pin1 WW had high structure similarity to wild-type. • Stabilities of G20D and S16R mutant Pin1 WW significantly decreased. • wild-type and G20D Pin1 WW utilized three-site mode for phosphorylated Tau binding. • wild-type and mutant Pin1 WW showed differential binding affinities to substrate.

60 APPLIED LIFE SCIENCES↗

Effect of lattice strain on structural and optical properties of ZnO nanorods grown by hydrothermal method

In this work, we have synthesized ZnO nanorods over ZnO seeds/ITO/glass substrate by the facile hydrothermal method. ZnO seeds are grown at different temperatures ranging from 150°C to 550°C in steps of 100°C. We have studied the effect of strain on the structural and optical properties of ZnO nanorods. It was observed that the growth temperature of seed layer has an influence over the lattice strain present in the nanorods. The as synthesized nanorods were characterized by scanning electron microscope (SEM), x-ray diffraction (XRD) and photoluminescence (PL). SEM images confirm the formation of dense arrays of vertically aligned nanorods on seeds which are grown at 350°C. In addition to this, XRD patterns reveal that these ZnO nanorods are preferentially oriented along (002) direction. The strain analysis based on the XRD results reveals that the minimum value of strain is obtained at 350°C which is attributed to the improved crystalline quality of the interface of seed layer and nanorods leading to their c-axis alignment and enhancement of ultraviolet emission as observed in the PL spectra.

77 NANOSCIENCE AND NANOTECHNOLOGY↗

Effect of crystallization water on the structural and electrical properties of CuWO{sub 4} under high pressure

The effect of crystallization water on the structural and electrical properties of CuWO{sub 4} under high pressure has been investigated by in situ X-ray diffraction and alternating current impedance spectra measurements. The crystallization water was found to be a key role in modulating the structural stability of CuWO{sub 4} at high pressures. The anhydrous CuWO{sub 4} undergoes two pressure-induced structural transitions at 8.8 and 18.5 GPa, respectively, while CuWO{sub 4}·2H{sub 2}O keeps its original structure up to 40.5 GPa. Besides, the crystallization water makes the electrical transport behavior of anhydrous CuWO{sub 4} and CuWO{sub 4}·2H{sub 2}O quite different. The charge carrier transportation is always isotropic in CuWO{sub 4}·2H{sub 2}O, but anisotropic in the triclinic and the third phase of anhydrous CuWO{sub 4}. The grain resistance of CuWO{sub 4}·2H{sub 2}O is always larger than that of anhydrous CuWO{sub 4} in the entire pressure range. By analyzing the relaxation response, we found that the large number of hydrogen bonds can soften the grain characteristic frequency of CuWO{sub 4}·2H{sub 2}O over CuWO{sub 4} by one order of magnitude.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Organic Electrochemical Transistor Channel Materials: Copolymerization Versus Physical Mixing of Glycolated and Alkoxylated Polymers

Organic electrochemical transistors (OECTs) feature a polymer channel capable of conducting both ions and electronic charges. The choice of the channel material is critical for OECT performance. Many efforts have focused on improving performance via the chemical tunability of conjugated polymers – through backbone, side chain, and molar mass engineering – leading to useful design principles for accumulation-mode OECT materials. However, tuning the chemical structure of conjugated polymers often requires time-consuming optimization of the synthesis route. Meanwhile, variations in molar mass, dispersity, structural defects, and metal content present challenges when attempting to analyze the detailed effects of structural modifications, as multiple performance-determining factors are often (unintentionally) changed at the same time. Therefore, this study explores blended channel materials obtained by physically mixing glycolated and alkoxylated polymers in different ratios, and compares their OECT performance with the corresponding statistical copolymers. It is shown that mixing two well-performing materials creates blends that enable rational tuning of the transistor properties without compromising on performance. Thus, channels based on blends of alkoxylated and glycolated polymers hold promise for OECT technology with tailored response, as only two materials are needed to achieve any desired side chain ratio, simplifying the optimization of OECT characteristics.

copolymerization↗

Waveguide effect of GaAsSb quantum wells in a laser structure based on GaAs

The waveguide effect of GaAsSb quantum wells in a semiconductor-laser structure based on GaAs is studied theoretically and experimentally. It is shown that quantum wells themselves can be used as waveguide layers in the laser structure. As the excitation-power density attains a value of 2 kW/cm{sup 2} at liquid-nitrogen temperature, superluminescence at the wavelength corresponding to the optical transition in bulk GaAs (at 835 nm) is observed.

36 MATERIALS SCIENCE↗

Investigation of magnetic proximity effect in Ta/YIG bilayer Hall bar structure

In this work, the investigation of magnetic proximity effect was extended to Ta which has been reported to have a negative spin Hall angle. Magnetoresistance (MR) and Hall measurements for in-plane and out-of-plane applied magnetic field sweeps were carried out at room temperature. The size of the MR ratio observed (∼10{sup −5}) and its magnetization direction dependence are similar to that reported in Pt/yttrium iron garnet, both of which can be explained by the spin Hall magnetoresistance theory. Additionally, a flip of magnetoresistance polarity is observed at 4 K in the temperature dependent measurements, which can be explained by the magnetic proximity effect induced anisotropic magnetoresistance at low temperature. Our findings suggest that both magnetic proximity effect and spin Hall magnetoresistance have contribution to the recently observed unconventional magnetoresistance effect.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

Effect of Restricted Geometry on the Structure and Phase Transitions in Potassium Nitrate Nanoparticles

The effect of restricted geometry and thermal prehistory of sample preparation on phase transitions in nanocomposites on base of porous glasses with average pore diameters 7 and 46 nm filled by potassium nitrate have been studied by X-rays and neutron diffraction. The nanoparticle sizes have been determined and phase diagrams (on cooling) for these nanoparticles have been described. It is shown that there is a critical nanoparticle size in the interval from 30 till 20 nm, at which in nanocomposite the ferroelectric phase is realized only regardless of preparation method.

77 NANOSCIENCE AND NANOTECHNOLOGY↗

Structural and magnetic properties and superconductivity in Ba(Fe 1-x TM x ) 2 As 2

We studied the effects on structural and magnetic phase transitions and the emergence of superconductivity in transition metal substituted BaFe 2 As 2 . We grew four series of Ba(Fe 1-x TM 2 ) 2 As 2 (TM=Ru, Mn, Co+Cr and Co+Mn) and characterized them by crystallographic, magnetic and transport measurements. We also subjected Ba(Fe 1-x Cr x ) 2 As 2 and Ba(Fe 1-x Co x ) 2 As 2 to heat treatment to explore what changes might be induced.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

Investigation of the Effect of Temperature on the Structure of SARS-CoV-2 Spike Protein by Molecular Dynamics Simulations

Statistical and epidemiological data imply temperature sensitivity of the SARS-CoV2 coronavirus. However, the molecular level understanding of the virus structure at different temperature is still not clear. Spike protein is the outermost structural protein of the SARS-CoV-2 virus which interacts with the Angiotensin Converting Enzyme 2 (ACE2), a human receptor, and enters the respiratory system. In this study, we performed an all atom molecular dynamics simulation to study the effect of temperature on the structure of the Spike protein. After 200 ns of simulation at different temperatures, we came across some interesting phenomena exhibited by the protein. We found that the solvent exposed domain of Spike protein, namely S1, is more mobile than the transmembrane domain, S2. Structural studies implied the presence of several charged residues on the surface of N-terminal Domain of S1 which are optimally oriented at 10– 30°C. Bioinformatics analyses indicated that it is capable of binding to other human receptors and should not be disregarded. Additionally, we found that receptor binding motif (RBM), present on the receptor binding domain (RBD) of S1, begins to close around temperature of 40°C and attains a completely closed conformation at 50°C. We also found that the presence of glycan moieties did not influence the observed protein dynamics. Nevertheless, the closed conformation disables its ability to bind to ACE2, due to the burying of its receptor binding residues. Our results clearly show that there are active and inactive states of the protein at different temperatures. This would not only prove beneficial for understanding the fundamental nature of the virus, but would be also useful in the development of vaccines and therapeutics.

59 BASIC BIOLOGICAL SCIENCES↗

One-step Ar/O{sub 2} thermal plasma processing of Y{sub 2}O{sub 3}:Eu{sup 3+} red phosphors: Phase structure, photoluminescent properties, and the effects of Sc{sup 3+} codoping

(Y{sub 0.95}Eu{sub 0.05}){sub 2}O{sub 3} red phosphors are synthesized in one step via Ar/O{sub 2} thermal plasma oxidation of atomized alcohol solutions of the component nitrates. Phase structure analysis found the direct products to be mixtures of a cubic and monoclinic phases, and the powder collected from the wall part of the plasma reactor as well as the finer portion of the total powder have significantly higher monoclinic contents ({approx}55 and 71 wt%, respectively). An almost pure-cubic structured phosphor powder can be converted from the phase mixture by annealing at a minimum temperature of 900 Degree-Sign C for 12 h, but at the expenses of significant coarsening/sintering of the nano-sized particles. It was first shown that codoping with 20 at% of Sc{sup 3+} may effectively retard crystallization of the undesired monoclinic phase and thus yield phosphor powders of high specific surface area ({approx}21.7 m{sup 2}/g) and significantly improved 611-nm red emission. Formation mechanism of the monoclinic phase and the effects of Sc{sup 3+} codoping on phase structure and luminescence properties were discussed. - Graphical abstract: Y{sub 2}O{sub 3}:Eu phosphors are synthesized in one-step via thermal plasma processing. The direct products are monoclinic and cubic phase mixtures, and Sc{sup 3+} codoping effectively suppresses crystallization of the undesired monoclinic phase to yield phosphor powders of high specific surface area and significantly improved photoluminescence. Highlights: Black-Right-Pointing-Pointer Thermal plasma processing yields Y{sub 2}O{sub 3}:Eu phosphors in one-step. Black-Right-Pointing-Pointer The direct products are monoclinic and cubic phase mixtures. Black-Right-Pointing-Pointer Sc{sup 3+} codoping effectively suppresses monoclinic crystallization. Black-Right-Pointing-Pointer Better luminescence is achieved via Sc{sup 3+} codoping.

36 MATERIALS SCIENCE↗

Defect formation during chlorine-based dry etching and their effects on the electronic and structural properties of InP/InAsP quantum wells

The general objective is the investigation of the defects formed by dry etching tools such as those involved in the fabrication of photonic devices with III–V semiconductors. Emphasis is put on plasma exposures with chlorine-based chemistries. In addition to identifying these defects and describing their effects on the electro-optic and structural properties, the long-term target would be to predict the impact on the parameters of importance for photonic devices, and possibly include these predictions in their design. The work is first centered on explaining the experimental methodology. This methodology starts with the design and growth of a quantum well structure on indium phosphide, including ternary indium arsenide/phosphide quantum wells with graded arsenic/phosphor composition. These samples have then been characterized by luminescence methods (photo- and cathodoluminescence), high-resolution transmission electron microscopy, and secondary ion mass spectrometry. As one of the parameters of importance in this study, the authors have also included the doping level. The samples have been exposed to the etching plasmas for “short” durations that do not remove completely the quantum wells, but change their optical signature. No masking layer with lithographic features was involved as this work is purely oriented to study the interaction between the plasma and the samples. A significant difference in the luminescence spectra of the as-grown undoped and doped samples is observed. A mechanism describing the effect of the built-in electric field appearing as a consequence of the doping profile is proposed. This mechanism involves quantum confined Stark effect and electric-field induced carrier escape from the quantum wells. In the following part, the effects of exposure to various chlorine-based plasmas were explored. Differences are again observed between the undoped and doped samples, especially for chemistries containing silicon tetrachloride. Secondary ion mass spectrometry indicates penetration of chlorine in the structures. Transmission electron microscopy is used to characterize the quantum well structure before and after plasma bombardment. By examining carefully the luminescence spectral properties, the authors could demonstrate the influence of the etching plasmas on the built-in electric field (in the case of doped samples), and relate it to some ionic species penetrating the structures. Etching plasmas involving both chlorine and nitrogen have also been studied. The etching rate for these chemistries is much slower than for some of the silicon tetrachloride based chemistries. Their effects on the samples are also very different, showing much reduced effect on the built-in electric field (for the doped samples), but significant blue-shifts of the luminescence peaks that the authors attributed to the penetration of nitrogen in the structures. Nitrogen, in interstitial locations, induces mechanical compressive stress that accounts for the blue-shifts. Finally, from the comparison between secondary ion mass spectrometry and luminescence spectra, the authors suggest some elements for a general mechanism involved in the etching by chloride-chemistries, in which a competition takes place between the species at the surface, active for the etching mechanism, and the species that penetrate the structure, lost for the etching process, but relevant in terms of impact on the electro-optic and structural features of the exposed materials.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

On the Effect of Confinement on the Structure and Properties of Small-Molecular Organic Semiconductors

Many typical organic optoelectronic devices, such as light-emitting diodes, field-effect transistors, and photovoltaic cells, use an ultrathin active layer where the organic semiconductor is confined within nanoscale dimensions. However, the question of how this spatial constraint impacts the active material is rarely addressed, although it may have a drastic influence on the phase behavior and microstructure of the active layer and hence the final performance. Here, the small-molecule semiconductor p-DTS(FBTTh 2 ) 2 is used as a model system to illustrate how sensitive this class of material can be to spatial confinement on device-relevant length scales. It is also shown that this effect can be exploited; it is demonstrated, for instance, that spatial confinement is an efficient tool to direct the crystal orientation and overall texture of p-DTS(FBTTh 2 ) 2 structures in a controlled manner, allowing for the manipulation of properties including photoluminescence and charge transport characteristics. This insight should be widely applicable as the temperature/confinement phase diagrams established via differential scanning calorimetry and grazing-incidence X-ray diffraction are used to identify specific processing routes that can be directly extrapolated to other functional organic materials, such as polymeric semiconductors, ferroelectrics or high-refractive-index polymers, to induce desired crystal textures or specific (potentially new) polymorphs.

14 SOLAR ENERGY↗

Effect of Fe doping on structural and impedance properties of PZTFN ceramics

An attempts have been made to synthesis the ceramics Pb{sub 1-3x/2} Fe{sub x}(Zr{sub 0.52}Ti{sub 0.48}){sub 1-5y/4} NbyO{sub 3} abbreviated as (PFZTN) for x = 1-6 mol% and y = 5.5 mol% by a semi-wet route. In the present paper, we have investigated the effect of Fe doping on structural and electrical properties of the PFZTN ceramics. X-ray diffraction (XRD) patterns reveal that PFZTN ceramics are single phase in nature. However, for x = 0.05 and 0.06, a secondary phase appears as discernible from the XRD profiles. Rietveld analysis of the powder diffraction data shows the presence of coexistence of tetragonal (P4mm space group) and rhombohedral phases (R3c space group) occurs near the morphotropic phase boundary (MPB) at x ≥ = 0.05. The log-log plots show that the conductivity increases with increase of temperature. The ac conductivity becomes sensitive at high frequency region and shifted towards higher frequency side with increasing temperature. It is observed that the activation energy (Ea) decreases with increasing frequency. This complex perovskite structure can be used as a multilayer ceramic capacitors and electromechanical transducers.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

Experimental Plan for EDF Energy Creep Rabbit Graphite Irradiations- Rev. 2 (replaces Rev. 0 ORNL/TM/2013/49)

The experimental results obtained here will assist in the development and validation of future models of irradiation induced creep of graphite by providing the following data: Inert creep stain data from low to lifetime AGR fluence Inert creep-property data (especially CTE) from low to lifetime AGR fluence Effect of oxidation on creep modulus (by indirect comparison with experiment 1 and direct comparison with experiment 3 NB. Experiment 1 and 3 are not covered here) Data to develop a mechanistic understanding, including: appropriate creep modulus (including pinning and high dose effects on structure), investigation of CTE-creep strain behavior under inert conditions oInformation on the effect of applied stress/creep strain on crystallite orientation (requires XRD), effect of creep strain on micro-porosity (requires tomography & microscopy) This document describes the experimental work planned to meet the requirements of project technical specification and EDF Energy requests for additional Pre-IE work. The PIE work is described in detail in this revision (Section 8 and 9).

Burchell, Timothy D.↗