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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 1,081 records · Page 60
All sourcesNASA NTRSDOE OSTI
DOE OSTI2024

Structural and Morphological Characteristics of Rare Earth Element-based MAX Phase and MXene

There has been a tremendous effort for the synthesis of crystalline MAX phases—a family of transition metal carbides and nitrides with a chemical formula of Mn+1AXn, where M is an early transition metal, A belongs to groups XIII – XVI in the periodic table, X is either C or N, and n can be in between 1 and 3. Furthermore, these materials have shown thermal and electrical conductance and have low density and high stiffness which open broad aspects of practical applications. Recently double transition metal MAX phases (M’ 2/3 M’’ 1/3 ) 2 AX - out-of-plane ordered, labeled as o-MAX and in-plane ordered, labeled as i-MAX, were reported. However, there are few reports on the synthesis and characterization of i-MAX and the corresponding MXenes. In this work, we synthesized Molybdenum-based rare earth containing i-MAX phase using arc melt technique. We then removed “A” element of i-MAX phase by acid treatment and sonication which resulted in two-dimensional (2D) transition metal carbides called MXenes. These MXenes offer high conductivity, hydrophilicity, magnetism, good dispersion ability in solvents, mechanical stability, and structural diversity with at least 100 stoichiometric MXene compositions and are recognized as multifunctional materials.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
DOE OSTI2019

From Thorium to Plutonium: Trends in Actinide(IV) Chloride Structural Chemistry

A series of eighteen actinide (IV) compounds were synthesized from acidic aqueous media containing thorium, uranium, or plutonium. The metal cation adopts a variety of different structural units with the general formula [An(H 2 O) x Cl y ] 4-y (x=4-7, y=2-4) or AnCl 6 2- charge balanced by protonated nitrogen-containing heterocycles. Compound identities were classified by single crystal X-ray diffraction and subsequently characterized by Raman, IR, and optical absorption spectroscopies. Discrepancies across the early actinides were observed in this family of An(IV)-chlorides, with Th adopting exclusively Th-aquo-chloro species, Pu forming only PuCl 6 2- , and U residing somewhere in between, crystallizing both as U-aquo-chloro and UCl 6 2- monomeric units. Reports of An-H 2 O-Cl species are largely absent from tetravalent An solid state discussions despite their identification in chloride solutions. Here, the isolation of unique An(IV)-chlorides may be attributed to nonbonding interactions provided by outer coordination sphere counter-ions that could play a role in stabilizing these structural units. Differences in the structural chemistry of Th, U, and Pu also demonstrate a break in the series despite their common oxidation state and nearly identical synthetic procedures.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
DOE OSTI2024

Observation of a new pedestal stability regime in MAST Upgrade H-mode plasmas

Abstract The first pedestal stability and structure analysis on the new MAST Upgrade (MAST-U) spherical tokamak H-mode plasmas is presented. Our results indicate that MAST-U pedestals are close to the low toroidal mode number ( n ) peeling branch of the peeling-ballooning instability, in contrast with MAST H-mode pedestals which were deeply in the high- n ballooning branch. This offers the possibility of reaching the ELM-free quiescent H-mode (Burrell et al 2005 Plasma Phys. Control. Fusion 47 B37–B52) or high-performance super H-mode (Snyder et al 2015 Nucl. Fusion 55 083026; Snyder et al 2019 Nucl. Fusion 59 086017) regimes. In addition, the coupling between the peeling and ballooning branches is weak in MAST-U, suggesting that a path to very high pedestal pressure gradient at high density may exist with sufficient heating power. A possible explanation for the differences between MAST and MAST-U pedestal stability is given in terms of plasma shaping parameters, in particular squareness and elongation, as well as the pedestal top temperature and collisionality.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗
DOE OSTI2024

High–Energy Earth–Abundant Cathodes with Enhanced Cationic/Anionic Redox for Sustainable and Long–Lasting Na–Ion Batteries

Layered iron/manganese-based oxides are a class of promising cathode materials for sustainable batteries due to their high energy densities and earth abundance. However, the stabilization of cationic and anionic redox reactions in these cathodes during cycling at high voltage remain elusive. Here, an electrochemically/thermally stable P2-Na 0.67 Fe 0.3 Mn 0.5 Mg 0.1 Ti 0.1 O 2 cathode material with zero critical elements is designed for sodium-ion batteries (NIBs) to realize a highly reversible capacity of ≈210 mAh g –1 at 20 mA g –1 and good cycling stability with a capacity retention of 74% after 300 cycles at 200 mA g –1 , even when operated with a high charge cut-off voltage of 4.5 V versus sodium metal. Combining a suite of cutting-edge characterizations and computational modeling, it is shown that Mg/Ti co-doping leads to stabilized surface/bulk structure at high voltage and high temperature, and more importantly, enhances cationic/anionic redox reaction reversibility over extended cycles with the suppression of other undesired oxygen activities. This work fundamentally deepens the failure mechanism of Fe/Mn-based layered cathodes and highlights the importance of dopant engineering to achieve high-energy and earth-abundant cathode material for sustainable and long-lasting NIBs.

25 ENERGY STORAGE↗
DOE OSTI2019

Enhanced Catalyst Durability for Bio-Based Adipic Acid Production by Atomic Layer Deposition

Harsh reaction environments challenge the lifetime productivity of conventional catalysts and impede emerging biobased chemical processes. Condensed-phase processing of muconic acid, a biobased platform chemical, leads to problematic levels of catalyst leaching and fouling. Atomic layer deposition (ALD) can improve catalyst durability using protective metal oxide coatings; however, a targeted coating strategy and cost models thereof are needed for application-specific deactivation challenges that can surmount these challenges while accounting for process implications. Herein, we utilize thin (<5 wt% Al) Al2O3 ALD coatings to increase the lifetime productivity of Pd/TiO2 during muconic acid hydrogenation to adipic acid. The ALD coating decreases Pd leaching by >3x and markedly improves the thermal stability of Pd and TiO2. Economic analysis for an adipic acid biorefinery supports that increased material costs and reduced catalyst productivity can be justified through lifetime extension. Broadly, this work lays the foundation for reducing the cost of biobased chemical processes through catalyst stability.

Settle, Amy↗
DOE OSTI2026

Rubisco kinetic acclimation at the holoenzyme level

Kinetic acclimation enables proteins to adjust their activity in response to environmental perturbations. For the CO 2 -fixing enzyme Rubisco, kinetic acclimation may be conferred by its small subunits. Plants express multiple small subunits and vary their expression with temperature. Here, we demonstrate that different small subunits can bind to the same Rubisco to form a heterogeneous holoenzyme. These small subunits had distinct kinetic effects which aligned with changes in holoenzyme structure and stability. Our findings indicate that small subunits enable Rubisco kinetic acclimation via manipulation of flexibility. By assembling a more rigid active site in higher temperatures and a more flexible one in lower temperatures, plants maximize the efficiency of their Rubisco, and thus photosynthesis, over a wide range of temperatures.

CO2 fixation↗
DOE OSTI2019

Erosion Challenges at the L-Bar Disposal Site - 19561

The L-Bar, New Mexico, Disposal Site is located in the northeast corner of Cibola County, 10 miles north of Laguna, and was the former site of a uranium mill and underground mine. The mill operated from 1977 to 1981 where a total of 1.9 x 10{sup 6} tonnes (2.1 million tons) of ore was processed. Solid and liquid byproduct, or tailings, from the milling process were impounded behind a dam constructed of native weathered Mancos Shale, which is a predominant geologic formation in the area. The tailings were encapsulated in place, and the resulting 40.5-hectare (100-acre) engineered disposal cell was completed in 2000. The 299-hectare (738-acre) Uranium Mill Tailings Radiation Control Act Title II site was transferred to the US Department of Energy (DOE) Office of Legacy Management under a US Nuclear Regulatory Commission general license in 2004. During reclamation activities, channels were designed and constructed into the surrounding weathered shale to protect the disposal cell from high-precipitation events. Due to the highly erodible soils and anticipated sediment deposition into the diversion channels, a sediment trap was also excavated. By excavating the channels and sediment trap, the local base elevation was altered, which exacerbated erosional forces. Recontouring surrounding drainage basins during the reclamation activities also promoted erosion by reducing natural rock armoring and vegetation that aids in soil stability. To compound the erosion issue, the L-Bar site is susceptible to short-duration, high-intensity, localized convective storms. Because the local geomorphology includes soils consisting of weathered shale, these precipitation events are not conducive to absorption into the soils, but rather to sheet flows that follow topography and concentrate in lower elevation areas where flow volumes and velocities increase. These factors result in the formation of deeply incised gullies and promote soil piping, which is an important geomorphic process in the widening of arroyos and the advancement of head-cutting, evident at the L-Bar site and surrounding areas. At the first annual inspection by DOE in 2005, it was noted that extensive erosion was occurring upgradient of the sediment trap. DOE determined that the design of the site's drainage system was the cause of extensive erosion. It is believed that by lowering the base elevation of the local drainage system through excavation of the sediment trap, the geomorphic response common to fluvial systems in a semiarid environment has increased the incision and remobilization of sediment downstream. Over time, these sediments would be deposited in the channels, which are designed to divert runoff away from the disposal cell, effectively limiting their capacities. The development of alluvial fans on one side of the channel directs flows to the opposite side of the channel, presenting the risk of cutting into the side slopes of the disposal cell. In addition, the upstream migrating gullies could intersect access roads and create hazards for adjacent stakeholders, including their grazing livestock. Current estimates conclude that potential offsite impacts could occur within the next 20 years, with gully migrations of up to 19 meters (63 feet) per year. In 2009, several erosion-control structures were constructed to reduce runoff velocities and ease the elevation differential created by the construction of the sediment trap and diversion channels. The first measurable storm events after construction occurred in August and September 2011, where one structure washed out and another structure was bypassed when runoff breached an earthen berm. DOE has conducted site assessments, continues to monitor erosion, and has applied lessons learned in the process of evaluating options to repair or modify the structures to stabilize the site and prevent potential short-term damage to adjacent properties as well as long-term damage to the disposal cell. (authors)

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗
DOE OSTI2021

Disturbance-accelerated succession increases the production of a temperate forest

Many secondary deciduous forests of eastern North America are approaching a transition in which maturing early successional tree species are declining, resulting in an uncertain future for these forests’ century-long carbon (C) sink. We initiated the Forest Accelerated Succession Experiment (FASET) at the University of Michigan Biological Station to examine the patterns and mechanisms underlying forest C cycling following the stem-girdling induced mortality of >6,700 early successional Populus spp. (aspen) and Betula papyrifera (paper birch). Since 2008, meteorological flux tower-based C cycling observations from the 33-ha treatment forest have been paired with those from a nearby unmanipulated forest. Following over a decade of observations, herein we revisit our core hypothesis: that net ecosystem production (NEP) would increase following the transition to mid-late successional species dominance due to increased canopy structural complexity. Supporting our hypothesis, NEP was stable, briefly declined, and then increased relative to the control in the decade following disturbance; however, increasing NEP was not associated with rising structural complexity but rather the rapid 1-year recovery of total LAI as mid-late successional Acer, Quercus, and Pinus assumed canopy dominance. The transition to mid-late successional species dominance improved carbon-use efficiency (CUE = NEP/gross primary production) as ecosystem respiration declined. Similar soil respiration rates in control and treatment forests, along with species differences in leaf physiology and the rising relative growth rates of mid-late successional species in the treatment forest, suggest changes in aboveground plant respiration and growth, respectively, were primarily responsible for increases in NEP. We conclude that deciduous forests transitioning from early to middle succession are capable of sustained or increased NEP, even when experiencing extensive tree mortality. This adds to mounting evidence that aging deciduous forests in the region will function as C sinks for decades to come.

54 ENVIRONMENTAL SCIENCES↗
NASA NTRS1990

Analytic semigroups: Applications to inverse problems for flexible structures

Convergence and stability results for least squares inverse problems involving systems described by analytic semigroups are presented. The practical importance of these results is demonstrated by application to several examples from problems of estimation of material parameters in flexible structures using accelerometer data.

Banks, H. T.↗
NASA NTRS1995

Kinetic structure of intermediate shocks: Implications for the magnetopause

A general study of the structure and stability of intermediate shocks (IS) in an isotropic plasma is presented using a hybrid as well as a resistive Hall MHD code. Special emphasis is put on the question of whether the rotational layers observed at the magnetopause can be intermediate shocks. The shocks are formed dynamically by the interaction between a flowing plasma and a stationary piston. Coplanar ISs (both strong and weak) are found to be stable in a collisionless plasma. The existence of slow shocks in a high beta plasma is also established for the first time. Noncoplanar ISs are found to be time-dependent, evolving toward a rotational discontinuity (RD) after some characteristic time tau which can be quite long (1000 Omega(exp -1), where Omega is the ion gyrofrequency). The value tau is larger the closer the rotation angle is to 180 deg. Rotations larger than 180 deg are found to be unstable, decaying into a state of minimum shear (i.e., rotation angle less than 180 deg). There are various length scales associated with an IS in the kinetic regime. The shortest scale is found to be the length scale over which rotation of the transverse component of the magnetic field takes place. This scale can have a half width as small as one ion inertial length (c/omega(sub p)) for electron sense rotations and 3c/omega(sub p) for ion sense rotations, for an upstream ion beta of unity. Both of these scales are consistent with the observed thickness at the magnetopause and identical to the corresponding RD scales. A detailed study of the mode conversion of the Alfven ion cyclotron waves (A/IC) waves across both slow and intermediate shocks and the resulting downstream wave spectrum are presented. The possibility that the large number of relfected ions observed at the magnetopause may be due to the presence of strong ISs is considered. The identification of strong ISs and their distinction from RDs should be possible in observations due to significant differences that exist between jump conditions and overall structure of the two discontinuities. The jumps in the plasma parameters across a weak IS are typically small. This together with the fact that the weak ISs and RDs have very similar thickness and other overall properties makes the distinction between weak ISs and RDs in the observations largely inconsequential. However, at large noncoplanarity angles the weak IS approaches the RD limit in a relatively short time (approximately less than 100 Omega (exp -1)). Thus, magnetopause rotations with large noncoplanarity angles are most likely either RDs or strong ISs. Finally, direct comparisons between fluid (resistive Hall MHD) and kinetic simulations show that fluid theory is not applicable to study of ISs in a collisionless plasma.

Karimabadi, H.↗
DOE OSTI2020

Potassium Prussian blue-coated Li-rich cathode with enhanced lithium ion storage property

With high specific capacity, the layered Li-rich Mn-based oxide (LRMO) is a promising candidate cathode material for Li-ion batteries. However, the irreversible release of Li-ions during the first charging process, instability of LRMO/electrolyte interface and relatively low ion conductivity of LRMO result in low initial Coulombic efficiency (ICE), poor cycle stability and rate performance, which prohibit its further application. Furthermore, interface engineering via additive coating is expected to effectively address these issues. Herein, we rely on potassium Prussian blue (KPB), a Li + acceptor with good ion conductivity, as a new coating material on LRMO particles. The KPB coating not only forms a protective layer on the surface of LRMO against electrolyte corrosion, but also functions as a host for Li + transport and accommodation, leading to enhanced ion conductivity and ICE of LRMO cathode. Consequently, 2 wt% KPB coated LRMO cathode achieved an initial discharge capacity of up to 281.7 mA h g -1 with an ICE of 85.69% compared to an ICE of 79.52% for the LRMO cathode without coating. The cycling and rate performance are also greatly improved as evidenced by the well maintained capacity of up to 176.8 mA h g -1 after 100 cycles at a current density of 0.5 C, compared to the limited capacity of only 135.3 mA h g -1 for the LRMO cathode without coating. Overall, this work pioneers the use of potassium Prussian blue as additive coating material to enhance performance of LRMO cathode, and we expect it to inspire the battery community with new strategies of material engineering/design toward practical application in high-energy lithium-ion batteries.

25 ENERGY STORAGE↗
DOE OSTI2021

Evolution of the structure and chemical composition of the interface between multi-component silicate glasses and yttria-stabilized zirconia after 40,000 h exposure in air at 800 °C

The chemical and structural stability of two commercial multicomponent silicate glasses (SCN and G6) in contact with yttria-stabilized zirconia (YSZ) was investigated after exposure times of up to 40,000 h in air at 800 °C. With exposure time, interfacial layers develop at the SCN-YSZ and G6-YSZ interfaces, which were characterized in detail using both quantitative chemical analysis and atomic-resolution imaging. At the SCN-YSZ interface, a Ca-Ba-Si-O reaction phase was found to grow by diffusion control. In G6-YSZ, Raman spectroscopy and electron microscopy revealed a disorganized interfacial reaction later between G6 and YSZ, and the occurrence of cubic to tetragonal to monoclinic phase transformations in YSZ. Finally, this microstructural evolution is discussed in terms of devitrification resistance of glass and diffusion processes at interfaces.

36 MATERIALS SCIENCE↗
DOE OSTI2025

Stability, electronic quantum states, and magnetic interactions of Er 3+ ions in Ga 2 ⁢O 3

Here, we report an ab initio study of phase stability, defect formation, electronic structure, and multiple magnetic, Dzyaloshinskii-Moriya, optical, hyperfine, and crystal field interactions in erbium (Er)-doped wide band gap 𝛼- and 𝛽-gallium oxides (Ga 2 ⁢O 3 ), critically important to make a foundation for both optoelectronic and quantum information applications. The chemical, structural, mechanical, and dynamical stabilities of the pristine phases are confirmed from respective negative formation energies, negative cohesive energies, favorable elastic constants, and positive phonon frequencies. The phonon dispersions indicate that the Ga-O bonds are uniform in the 𝛼-phase, while they vary in the 𝛽-phase due to the anisotropic polyhedral movement. The defect formation energy analysis confirms that both Er-doped 𝛼- and 𝛽−Ga 2 ⁢O 3 prefer Er 3+ (neutral) state. The underestimated band gaps of the pristine phases from standard density functional theory (DFT) calculations as compared to experimental values are corrected by employing the hybrid functional calculations, resulting in the indirect band gaps of 5.21 eV in 𝛼−Ga 2 ⁢O 3 and 4.94 eV in 𝛽−Ga 2 ⁢O 3 . The site preference energy analysis indicates partial occupation of Er in the octahedral site of Ga. The anisotropic nature of hyperfine tensor coefficients of Er is similar in both phases, which may be due to the occupation of Er in the same octahedral Ga site. On the other hand, the calculated magnetic exchange interaction between two Er dopants is negative for 𝛼 and positive for 𝛽, indicating an antiferromagnetic (AFM) ground state in the former and a ferromagnetic (FM) ground state in the latter. Large values of Dzyaloshinskii-Moriya interactions (DMIs) are obtained along the 𝑥 direction in the 𝛼 and along the 𝑦 direction in the 𝛽. The large DMI may support exotic magnetic textures, a promising direction for spintronic applications. The analysis of dielectric constants and refractive indices of both pristine and Er-doped phases shows a good agreement with available experimental values. The calculated optical anisotropy is slightly higher in 𝛽 than those in 𝛼, which is due to the involvement of lower symmetry in 𝛽. The crystal field coefficients (CFCs) calculated from DFT are used to analyze 4⁢𝑓 multiplets and 4⁢𝑓 −4⁢𝑓 transitions. Thus calculated lowest energy level of the first excited state to the lowest energy level of the ground state is about 1.53 µ⁢m, which is in a good agreement with available experiments, and it falls within the quantum telecommunication wavelength range.

3-dimensional systems↗
DOE OSTI2022

Enhancing the Reversibility of Lattice Oxygen Redox Through Modulated Transition Metal–Oxygen Covalency for Layered Battery Electrodes

Utilizing reversible lattice oxygen redox (OR) in battery electrodes is an essential strategy to overcome the capacity limitation set by conventional transition metal redox. However, lattice OR reactions are often accompanied with irreversible oxygen oxidation, leading to local structural transformations and voltage/capacity fading. Herein, it is proposed that the reversibility of lattice OR can be remarkably improved through modulating transition metal-oxygen covalency for layered electrode of Na-ion batteries. By developing a novel layered P2-Na 0.6 Mg 0.15 Mn 0.7 Cu 0.15 O 2 electrode, it is demonstrated that the highly electronegative Cu dopants can improve the lattice OR reversibility to 95% compared to 73% for Cu-free counterpart, as directly quantified through high-efficiency mapping of resonant inelastic X-ray scattering. Crucially, the large energetic overlap between Cu 3d and O 2p states dictates the rigidity of oxygen framework, which effectively mitigates the structural distortion of local oxygen environment upon (de)sodiation and leads to the enhanced lattice OR reversibility. The electrode also exhibits a completely solid-solution reaction with an ultralow volume change of only 0.45% and a reversible metal migration upon cycling, which together ensure the improved electrochemical performance. Finally, these results emphasize the critical role of transition metal-oxygen covalency for enhancing the reversibility of lattice OR toward high-capacity electrodes employing OR chemistry.

25 ENERGY STORAGE↗
DOE OSTI2022

Resolving the Chemical Formula of Nesquehonite via NMR Crystallography, DFT Computation, and Complementary Neutron Diffraction

Nesquehonite is a magnesium carbonate mineral relevant to carbon sequestration envisioned for carbon capture and storage of CO 2 . Its chemical formula remains controversial today, assigned as either a hydrated magnesium carbonate [MgCO 3 · 3H 2 O], or a hydroxy- hydrated- magnesium bicarbonate [Mg(HCO 3 )OH · 2H 2 O]. Here, the resolution of this controversy is central to understanding this material‘s thermodynamic, phase, and chemical behavior. In an NMR crystallography study, using rotational-echo double-resonance 13 C{ 1 H} (REDOR), 13 C- 1 H distances are determined with precision, and the combination of 13 C static NMR lineshapes and density functional theory (DFT) calculations are used to model different H atomic coordinates. [MgCO 3 · 3H 2 O] is found to be accurate, and evidence from neutron powder diffraction bolsters these assignments. Refined H positions can help understand how H-bonding stabilizes this structure against dehydration to MgCO 3 . More broadly, these results illustrate the power of NMR crystallography as a technique for resolving questions where X-ray diffraction is inconclusive.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
DOE OSTI2021

Response of Stream Metabolism to Coarse Woody Debris Additions Along a Catchment Disturbance Gradient

We evaluated the ecological effectiveness of an in-stream restoration project involving coarse woody debris (CWD) additions to streams along an upland soil and vegetation disturbance gradient at the Fort Benning Military Installation near Columbus, GA. We examined short-term (immediate effectiveness) and longer-term (sustainability) responses to CWD additions by measuring ecosystem metabolism rates in 8 streams quarterly over a 6-year period, including 3 years before (2001–2003) and 3 years after (2004–2006) CWD additions that were made to half of the streams. Ecosystem respiration (ER) rates in most CWD addition streams increased relative to control streams from spring 2004 through autumn 2005, suggesting heterotrophic bacteria were the initial responders to CWD additions. Gross primary production (GPP) rates remained low (typically < 0.3 g O 2 m -2 d -1 ) but increased in some CWD addition streams relative to control streams in spring 2004 and 2005. The magnitude of ER increases in CWD addition streams during the first two years post-addition increased with catchment disturbance intensity, indicating that more heavily disturbed streams responded most strongly to restorations—an important consideration when targeting future restoration locations. Because restorations did not address actual upland disturbance, continued high erosion rates resulted in 32–77% of the added CWD being buried by year two and a corresponding return of GPP and ER rates to pre-CWD addition levels by year three. If restoration projects do not adequately address the source of catchment disturbances, CWD additions will provide only short-term increases in streambed structure and stability, hydrodynamic complexity, and nutrient and organic matter processing and retention.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2022

Comparison of PsbQ and Psb27 in photosystem II provides insight into their roles

Photosystem II (PSII) catalyzes the oxidation of water at its active site that harbors a high-valent inorganic Mn 4 CaO x cluster called the oxygen-evolving complex (OEC). Extrinsic subunits generally serve to protect the OEC from reductants and stabilize the structure, but diversity in the extrinsic subunits exists between phototrophs. Recent cryo-electron microscopy experiments have provided new molecular structures of PSII with varied extrinsic subunits. We focus on the extrinsic subunit PsbQ, that binds to the mature PSII complex, and on Psb27, an extrinsic subunit involved in PSII biogenesis. PsbQ and Psb27 share a similar binding site and have a four-helix bundle tertiary structure, suggesting they are related. Here, we use sequence alignments, structural analyses, and binding simulations to compare PsbQ and Psb27 from different organisms. We find no evidence that PsbQ and Psb27 are related despite their similar structures and binding sites. Evolutionary divergence within PsbQ homologs from different lineages is high, probably due to their interactions with other extrinsic subunits that themselves exhibit vast diversity between lineages. This may result in functional variation as exemplified by large differences in their calculated binding energies. Psb27 homologs generally exhibit less divergence, which may be due to stronger evolutionary selection for certain residues that maintain its function during PSII biogenesis which is consistent with their more similar calculated binding energies between organisms. Previous experimental inconsistencies, low confidence binding simulations, and recent structural data suggest that Psb27 is likely to exhibit flexibility that may be an important characteristic of its activity. Furthermore, the analysis provides insight into the functions and evolution of PsbQ and Psb27, and an unusual example of proteins with similar tertiary structures and binding sites that probably serve different roles.

59 BASIC BIOLOGICAL SCIENCES↗