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At least 1,081 records · Page 60

US Perspectives on the Conventional/Nuclear Interactions and the Impacts on Nuclear Escalation Risks and Future Arms Control Prospects

This short paper is organized around a few discrete questions. How have U.S. perspectives on conventional and nuclear interactions evolved in recent years? How have these changing perspectives shaped U.S. thinking on perceived nuclear escalation risks with Russia, both long standing and newly emerged? And finally, what do these U.S. perceptions of interactions and risks mean for future potential arms control either in the conventional or nuclear arena? The answers to these questions appear to show some promise for future work in this area. Conventional and nuclear interactions are increasing, and thus the two domains cannot be kept as deliberately or artificially separated as in the past. There is a growing mutual recognition regarding the interplay between conventional and nuclear capabilities in the strategic stability equation. There is also an increasingly shared recognition in the United States and Russia that nuclear escalation risks are likely to originate in conventional crises or conflict, placing an imperative on some form of conflict prevention procedures at the lower end of the spectrum. This requirement suggests some potential areas for risk reduction measures outside of those traditionally considered in conventional and nuclear arms control over the past several decades.

98 NUCLEAR DISARMAMENT, SAFEGUARDS, AND PHYSICAL P↗

Efficacy of TACE in TIPS Patients: Comparison of Treatment Response to Chemoembolization for Hepatocellular Carcinoma in Patients With and Without a Transjugular Intrahepatic Portosystemic Shunt

Purpose: To compare treatment response after transarterial chemoembolization (TACE) for hepatocellular carcinoma (HCC) in patients with and without a transjugular intrahepatic portosystemic shunt (TIPS). Materials and Methods: A retrospective review of patients who underwent conventional TACE for HCC between January 2005 and December 2009 identified 10 patients with patent TIPS. From the same time period, 23 patients without TIPS were selected to control for comparable Model for End-Stage Liver Disease and Child-Pugh-Turcotte scores. The two groups showed similar distribution of Barcelona Clinic Liver Cancer and United Network of Organ Sharing stages. Target HCC lesions were evaluated according to the modified response evaluation criteria in solid tumors (mRECIST) guidelines. Transplantation rate, time to tumor progression, and overall survival (OS) were documented. Results: After TACE, the rate of complete response was significantly greater in non-TIPS patients compared with TIPS patients (74 vs. 30 %, p = 0.03). Objective response rate (complete and partial response) trended greater in the non-TIPS group (83 vs. 50 %, p = 0.09). The liver transplantation rate was 80 and 74 % in the TIPS and non-TIPS groups, respectively (p = 1.0). Time to tumor progression was similar (p = 0.47) between the two groups. OS favored the non-TIPS group (p = 0.01) when censored for liver transplantation. Conclusion: TACE is less effective in achieving complete or partial response using mRECIST criteria in TIPS patients compared with those without a TIPS. Nevertheless, similar clinical outcomes may be achieved, particularly in TIPS patients who are liver-transplantation candidates.

62 RADIOLOGY AND NUCLEAR MEDICINE↗

A distributed decision framework for building clusters with different heterogeneity settings

In the past few decades, extensive research has been conducted to develop operation and control strategy for smart buildings with the purpose of reducing energy consumption. Besides studying on single building, it is envisioned that the next generation buildings can freely connect with one another to share energy and exchange information in the context of smart grid. It was demonstrated that a network of connected buildings (aka building clusters) can significantly reduce primary energy consumption, improve environmental sustainability and building s resilience capability. However, an analytic tool to determine which type of buildings should form a cluster and what is the impact of building clusters heterogeneity based on energy profile to the energy performance of building clusters is missing. To bridge these research gaps, we propose a self-organizing map clustering algorithm to divide multiple buildings to different clusters based on their energy profiles, and a homogeneity index to evaluate the heterogeneity of different building clusters configurations. In addition, a bi-level distributed decision model is developed to study the energy sharing in the building clusters. To demonstrate the effectiveness of the proposed clustering algorithm and decision model, we employ a dataset including monthly energy consumption data for 30 buildings where the data is collected every 15 min. It is demonstrated that the proposed decision model can achieve at least 13% cost savings for building clusters. Furthermore, the results show that the heterogeneity of energy profile is an important factor to select battery and renewable energy source for building clusters, and the shared battery and renewable energy are preferred for more heterogeneous building clusters.

32 ENERGY CONSERVATION, CONSUMPTION, AND UTILIZATI↗

Host genotype and age shape the leaf and root microbiomes of a wild perennial plant

Bacteria living on and in leaves and roots influence many aspects of plant health, so the extent of a plant's genetic control over its microbiota is of great interest to crop breeders and evolutionary biologists. Laboratory-based studies, because they poorly simulate true environmental heterogeneity, may misestimate or totally miss the influence of certain host genes on the microbiome. Here we report a large-scale field experiment to disentangle the effects of genotype, environment, age and year of harvest on bacterial communities associated with leaves and roots of Boechera stricta (Brassicaceae), a perennial wild mustard. Host genetic control of the microbiome is evident in leaves but not roots, and varies substantially among sites. Microbiome composition also shifts as plants age. Furthermore, a large proportion of leaf bacterial groups are shared with roots, suggesting inoculation from soil. Our results demonstrate how genotype-by-environment interactions contribute to the complexity of microbiome assembly in natural environments.

59 BASIC BIOLOGICAL SCIENCES↗

Machine learning predicts new anti-CRISPR proteins

The increasing use of CRISPR–Cas9 in medicine, agriculture, and synthetic biology has accelerated the drive to discover new CRISPR–Cas inhibitors as potential mechanisms of control for gene editing applications. Many anti-CRISPRs have been found that inhibit the CRISPR–Cas adaptive immune system. However, comparing all currently known anti-CRISPRs does not reveal a shared set of properties for facile bioinformatic identification of new anti-CRISPR families. Here, we describe AcRanker, a machine learning based method to aid direct identification of new potential anti-CRISPRs using only protein sequence information. Using a training set of known anti-CRISPRs, we built a model based on XGBoost ranking. We then applied AcRanker to predict candidate anti-CRISPRs from predicted prophage regions within self-targeting bacterial genomes and discovered two previously unknown anti-CRISPRs: AcrllA20 (ML1) and AcrIIA21 (ML8). We show that AcrIIA20 strongly inhibits Streptococcus iniae Cas9 (SinCas9) and weakly inhibits Streptococcus pyogenes Cas9 (SpyCas9). We also show that AcrIIA21 inhibits SpyCas9, Streptococcus aureus Cas9 (SauCas9) and SinCas9 with low potency. The addition of AcRanker to the anti-CRISPR discovery toolkit allows researchers to directly rank potential anti-CRISPR candidate genes for increased speed in testing and validation of new anti-CRISPRs. A web server implementation for AcRanker is available online at http://acranker.pythonanywhere.com/.

59 BASIC BIOLOGICAL SCIENCES↗

A low-cost centralized HVAC control system solution for energy savings, load shedding, and improved maintenance

University campuses rely on centralized controls for managing and optimizing complex HVAC systems in larger buildings. However, most campuses also have many smaller buildings with packaged HVAC systems controlled by a stand-alone thermostat. Even when these distributed and often overlooked systems have modern programmable thermostats, they cannot be centrally monitored or controlled, and they are typically not programmed adequately. This paper describes the implementation of a low-cost centralized control solution for these systems serving smaller campus buildings, mostly under 5,000 sf and representative of light commercial spaces. Thanks to advances in technology spurred by residential and commercial IoT developments, simple networked thermostat solutions exist that can easily replace original thermostats, and, connect these systems to a web-based portal for monitoring and control. We show that, with small customizations, these platforms can be integrated into facility management workflows. Beyond the energy savings potential from improved scheduling and closer management of these systems, there are significant advantages for maintenance crews since these systems can now be monitored on smart phones or tablets. A grid-responsive load-shedding program has also been implemented for additional cost savings. The networked thermostats can also be connected to additional systems such as economizer controls for improved ventilation management and energy savings. With data from these systems integrated centrally, it can also be used for improved analytics and fault detection. A toolkit has been developed to share the program with other campuses, whether for energy savings, improved management of ventilation, or a more proactive maintenance approach.

Fauchier-Magnan, Nicolas↗

The anaerobic fungus Caecomyces churrovis produces H 2 via a non-bifurcating NADH-dependent enzyme complex

ABSTRACT Hydrogenosomes are mitochondria-derived organelles that produce ATP and H 2 to support energy metabolism in anaerobic eukaryotes. H 2 production allows reoxidation of reduced cofactors generated during fermentative metabolism; however, the metabolic mechanisms for H 2 production in anaerobic eukaryotes remains incompletely understood. In particular, it remains unclear whether anaerobic fungi (AF) hydrogenosomes use a ferredoxin-dependent pathway or a distinct mechanism to regenerate NAD(P) + and link electron transfer to H 2 formation. Here, by combining genomic search, proteomic analysis, and enzymology, we reveal the molecular mechanism for H 2 production in the AF strain Caecomyces churrovis . Our enzyme assays on the organelle fraction of C. churrovis revealed the activity of H 2 :NAD + oxidoreductase but not pyruvate:ferredoxin oxidoreductase, which is usually linked to H 2 formation. We identified genes encoding [FeFe] hydrogenase (Hyd) and NADH dehydrogenase subunits E and F (NuoE, NuoF) in C. churrovis , and confirmed their expression in the isolated hydrogenosomal fractions by proteomic analysis. Combining the individually purified enzymes, we found Hyd and NuoEF proteins formed H 2 directly from NADH independently of ferredoxin, functioning as a non-bifurcating NADH-dependent enzyme rather than an electron-bifurcating enzyme. We identified homologs of hydrogenosomal NuoE, NuoF, and Hyd in many other AF, indicating this pathway is commonly shared among the AF. This work demonstrates the existence of a non-bifurcating NADH-dependent enzyme complex in eukaryotes. Moreover, this complex could potentially be exploited as a target for controlling AF H 2 production and altering fungal metabolism. IMPORTANCE H 2 production is a prominent feature of anaerobic energy metabolism, yet our understanding of eukaryotic mechanisms remains limited. Anaerobic fungi (AF) are key decomposers of lignocellulose and contribute to hydrogen flux in anaerobic environments. Although it has been more than 40 years since the H 2 production from AF was first reported, the molecular mechanism for hydrogenosomal H 2 production and redox balance remains unclear. We demonstrate that AF produce H 2 from NADH utilizing a non-bifurcating NADH-dependent enzyme complex rather than an electron-bifurcating, ferredoxin-dependent variant. We show that this enzyme complex is conserved across multiple AF lineages and thus demonstrate the occurrence of a non-bifurcating NADH-dependent enzyme in eukaryotes. This discovery expands our understanding of eukaryotic hydrogenosomal metabolism, reveals a previously unknown strategy for redox balancing, and highlights potential targets for manipulating H 2 production. These insights have broad implications for microbial energy metabolism, anaerobic ecosystems, and bioengineering of H 2 -producing systems.

Zhang, Bo [Department of Chemical Engineering, Uni↗

Guidelines for spaceborne microwave remote sensors

A handbook was developed to provide information and support to the spaceborne remote sensing and frequency management communities: to guide sensor developers in the choice of frequencies; to advise regulators on sensor technology needs and sharing potential; to present sharing analysis models and, through example, methods for determining sensor sharing feasibility; to introduce developers to the regulatory process; to create awareness of proper assignment procedures; to present sensor allocations; and to provide guidelines on the use and limitations of allocated bands. Controlling physical factors and user requirements and the regulatory environment are discussed. Sensor frequency allocation achievable performance and usefulness are reviewed. Procedures for national and international registration, the use of non-allocated bands and steps for obtaining new frequency allocations, and procedures for reporting interference are also discussed.

Litman, V.↗

One for All: Maintaining a Single Schedule Database for Large Development Projects

Efficiently maintaining and controlling a single schedule database in an Integrated Product Team environment is a significant challenge. It's accomplished effectively with the right combination of tools, skills, strategy, creativity, and teamwork. We'll share our lessons learned maintaining a 20,000 plus task network on a 36 month project.

Hilscher, R.↗

Comparative Ecology of H2 Cycling in Organotrophic and Phototrophic Ecosystems

The simple biochemistry of H2 is critical to a large number of microbial processes, affecting the interaction of organisms with each other and with the environment. The sensitivity of these many processes to H2 can be described quantitatively, at a basic thermodynamic level. This shared dependence on H2 may provide a means for interpreting the ecology and system-level biogeochemistry of widely variant microbial ecosystems on a common (and quantitative) level. Understanding the factors that control H2 itself is a critical prerequisite. Here, we examine two ecosystems that vary widely with respect to H2 cycling. In anoxic, 'organotrophic' sediments from Cape Lookout Bight (North Carolina, USA), H2 partial pressures are strictly maintained at low, steady-state levels by H2-consuming organisms, in a fashion that can be quantitatively predicted by simple thermodynamic calculations. In phototrophic microbial mats from Baja, Mexico, H2 partial pressures are instead controlled by the activity of light-sensitive H2-producing organisms. In consequence, H2 partial pressures within the system fluctuate by orders of magnitude on hour-long time scales. The differences in H2 cycling subsequently impact H2-sensitive microbial processes, such as methanogenesis. For example, the presence of sulfate in the organotrophic system always yielded low levels of H2 that were inhibitory to methanogenesis; however, the elevated levels of H2 in the phototrophic system favored methane production at significant levels, even in the presence of high sulfate concentrations. The myriad of other H2-sensitive microbial processes are expected to exhibit similar behavior.

Hoehler, Tori M.↗

Data Grid Management Systems

The "Grid" is an emerging infrastructure for coordinating access across autonomous organizations to distributed, heterogeneous computation and data resources. Data grids are being built around the world as the next generation data handling systems for sharing, publishing, and preserving data residing on storage systems located in multiple administrative domains. A data grid provides logical namespaces for users, digital entities and storage resources to create persistent identifiers for controlling access, enabling discovery, and managing wide area latencies. This paper introduces data grids and describes data grid use cases. The relevance of data grids to digital libraries and persistent archives is demonstrated, and research issues in data grids and grid dataflow management systems are discussed.

Moore, Reagan W.↗

Infusing Reliability Techniques into Software Safety Analysis

Software safety analysis for a large software intensive system is always a challenge. Software safety practitioners need to ensure that software related hazards are completely identified, controlled, and tracked. This paper discusses in detail how to incorporate the traditional reliability techniques into the entire software safety analysis process. In addition, this paper addresses how information can be effectively shared between the various practitioners involved in the software safety analyses. The author has successfully applied the approach to several aerospace applications. Examples are provided to illustrate the key steps of the proposed approach.

FTA↗

Interplanetary Trajectory Design for NASA's Common Probe Study

The Galileo Probe, Pioneer-Venus probes, and SPRITE concept all share a number of common characteristics. They all follow a similar entry and descent sequence, using an aeroshell to protect against entry environments, and parachutes to aid in extrusion and descent speed control of the descent vehicle containing the science instruments. The descent vehicles all contained similar instruments (e.g. mass spectrometers and atmosphere structure sensors), and data was either relayed back to a carrier spacecraft (Galileo Probe, SPRITE) or transmitted direct to Earth (Pioneer-Venus). Based on these similar characteristics, NASA initiated a study to investigate a “common probe' that might be designed to perform similar science in a variety of planetary environments. This concept would leverage a common aeroshell design, and descent vehicle designs that could be made as similar as possible (the primary exception being that Venus will require a pressure vessel due to the extreme pressures and temperatures seen in the lower portion of the descent). To support the Common Probe study, GSFC and JPL performed a series of interplanetary trajectory analyses to help develop the mission designs for Venus, Jupiter, Saturn, Uranus, and Neptune. Primary considerations in the trajectory modeling included: a maximum of 12-year time of flight (for outer planet destinations), generation of both steep and shallow entry trajectories to each destination (where steep and shallow resulted in approximately 150 g and 50 g peak deceleration during entry at each location), and consideration of the data relay. Gravity assists and trajectories with low delta-V requirements (typically much less than 500 m/s) were also incorporated into the design process to enable launch on existing vehicles such as the Atlas V.

Hughes, Kyle M.↗

Federated Machine Learning-Based Anomaly Detection System for Synchrophasor Network Using Heterogeneous Data Sets: Preprint

Synchrophasor technology is widely deployed in the energy management system to monitor the grid health at micro level and perform necessary corrective actions in real time; however, integrated phasor devices and data aggregators are exposed to several cybersecurity threats. This paper proposes a federated ML(FML)-based ADS to detect several data integrity attacks in the synchrophasor network. The proposed approach integrates the horizontal FML technique and consists of substation-based local models and a control center-based global model. The proposed methodology includes training local models using heterogeneous data sets that include network and grid information and updating the global model through multiple iterations by sharing model gradients. Finally, the trained global model is applied to identify cyberattacks, normal operation, and physical events. To validate the proof of concept, we used synthetic data sets generated by Mississippi State University and Oak Ridge National Laboratory for training and testing the classification models using the National Renewable Energy Laboratory's high performance computing resources. Our experimental results, computed through several performance measures, reveal that the proposed approach shows consistent performance during the binary, three-class, and multiclass classifications while ensuring privacy of synchrophasor data.

anomaly detection system↗

CG-Kit: Code Generation Toolkit for performant and maintainable variants of source code applied to Flash-X hydrodynamics simulations

CG-Kit is a new Code Generation tool-Kit that we have developed as a part of the solution for portability and maintainability for multiphysics computing applications. The development of CG-Kit is rooted in the urgent need created by the shifting landscape of high-performance computing platforms and the algorithmic complexities of a particular large-scale multiphysics application: Flash-X. To efficiently use computing resources on a heterogeneous node, an application must have a map of computation to resources and a mechanism to move the data and computation to the resources according to the map. Most existing performance portability solutions are focussed on abstracting the expression of computations so that a unified source code can be specialized to run on different resources. However, such an approach is insufficient for a code like Flash-X, which has a multitude of code components that can be assembled in various permutations and combinations to form different instances of applications. Similar challenges apply to any code that has composability, where a single specified way of apportioning work among devices may not be optimal. Additionally, use cases arise where the optimal control flow of computation may differ for different devices while the underlying numerics remain identical. This combination leads to unique challenges including handling an existing large code base in Fortran and/or C/C++, subdivision of code into a great variety of units supporting a wide range of physics and numerical methods, different parallelization techniques for distributed and shared memory systems and accelerator devices, and heterogeneity of computing platforms requiring coexisting variants of parallel algorithms. All of these challenges demand that scientific software developers apply existing knowledge about domain applications, algorithms, and computing platforms to determine custom abstractions and granularity for code generation. There is a critical lack of tools to tackle those problems. CG-Kit is designed to fill this gap by providing a user with the ability to express their desired control flow and computation-to-resource map in the form a pseudocode-like recipe. It consists of standalone tools that can be combined into highly specific and, we argue, highly effective portability and maintainability toolchains. Here we present the design of our new tools: parametrized source trees, control flow graphs, and recipes. The tools are implemented in Python. They are agnostic to the programming language of the source code targeted for code generation. In conclusion, we demonstrate the capabilities of the toolkit with two examples, first, multithreaded variants of the basic AXPY operation, and second, variants of parallel algorithms within a hydrodynamics solver, called Spark, from Flash-X that operates on block-structured adaptive meshes.

Algorithmic portability↗

Structural Evolution of Layered Hybrid Lead Iodide Perovskites in Colloidal Dispersions

Controlling the structure of layered hybrid metal halide perovskites, such as the Ruddlesden-Popper (R-P) phases, is challenging because of their tendency to form mixtures of varying composition. Colloidal growth techniques, such as antisolvent precipitation, forms colloidal dispersions with properties that match bulk layered R-P phases, but controlling the composition of these particles remains challenging. Here, we explore the microstructure of particles of R-P phases of methylammonium lead iodide prepared by antisolvent precipitation from ternary mixtures of alkylammonium cations, where one cation can form perovskite phases (CH 3 NH 3 + ) and the other two promote layered structures as spacers (e.g. C 4 H 9 NH 3 + and C 12 H 25 NH 3 + ). We determine that alkylammonium spacers pack with constant methylene density in the R-P interlayer, and exclude interlayer solvent in dispersed colloids, regardless of length or branching. Using this result, we illustrate how the competition between cations that act as spacers between layers, or as grain- terminating ligands, determines the colloidal microstructure of layered R-P crystallites in solution. Optical measurements reveal that quantum well dimensions can be tuned by engineering the ternary cation composition. Transmission synchrotron wide-angle X-ray scattering and small angle neutron scattering reveal changes in the structure of colloids in solvent and after deposition into thin films. In particular, we find that spacers can alloy between R-P layers if they share common steric arrangements, but tend to segregate into polydisperse R-P phases if they do not mix. In conclusion, this study provides a framework to compare the microstructure of colloidal layered perovskites and suggests clear avenues to control phase and colloidal morphology.

14 SOLAR ENERGY↗

CFD Analysis for Assessing the Effect of Wind on the Thermal Control of the Mars Science Laboratory Curiosity Rover

The challenging range of landing sites for which the Mars Science Laboratory Rover was designed, requires a rover thermal management system that is capable of keeping temperatures controlled across a wide variety of environmental conditions. On the Martian surface where temperatures can be as cold as -123 C and as warm as 38 C, the rover relies upon a Mechanically Pumped Fluid Loop (MPFL) Rover Heat Rejection System (RHRS) and external radiators to maintain the temperature of sensitive electronics and science instruments within a -40 C to 50 C range. The RHRS harnesses some of the waste heat generated from the rover power source, known as the Multi Mission Radioisotope Thermoelectric Generator (MMRTG), for use as survival heat for the rover during cold conditions. The MMRTG produces 110 W of electrical power while generating waste heat equivalent to approximately 2000 W. Heat exchanger plates (hot plates) positioned close to the MMRTG pick up this survival heat from it by radiative heat transfer. Winds on Mars can be as fast as 15 m/s for extended periods. They can lead to significant heat loss from the MMRTG and the hot plates due to convective heat pick up from these surfaces. Estimation of this convective heat loss cannot be accurately and adequately achieved by simple textbook based calculations because of the very complicated flow fields around these surfaces, which are a function of wind direction and speed. Accurate calculations necessitated the employment of sophisticated Computational Fluid Dynamics (CFD) computer codes. This paper describes the methodology and results of these CFD calculations. Additionally, these results are compared to simple textbook based calculations that served as benchmarks and sanity checks for them. And finally, the overall RHRS system performance predictions will be shared to show how these results affected the overall rover thermal performance.

wind↗