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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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All sourcesNASA NTRSDOE OSTI
DOE OSTI2024

Improved detection of low-frequency within-host variants from deep sequencing: A case study with human papillomavirus

Abstract High-coverage sequencing allows the study of variants occurring at low frequencies within samples, but is susceptible to false-positives caused by sequencing error. Ion Torrent has a very low single nucleotide variant (SNV) error rate and has been employed for the majority of human papillomavirus (HPV) whole genome sequences. However, benchmarking of intrahost SNVs (iSNVs) has been challenging, partly due to limitations imposed by the HPV life cycle. We address this problem by deep sequencing three replicates for each of 31 samples of HPV type 18 (HPV18). Errors, defined as iSNVs observed in only one of three replicates, are dominated by C→T (G→A) changes, independently of trinucleotide context. True iSNVs, defined as those observed in all three replicates, instead show a more diverse SNV type distribution, with particularly elevated C→T rates in CCG context (CCG→CTG; CGG→CAG) and C→A rates in ACG context (ACG→AAG; CGT→CTT). Characterization of true iSNVs allowed us to develop two methods for detecting true variants: (1) VCFgenie, a dynamic binomial filtering tool which uses each variant’s allele count and coverage instead of fixed frequency cut-offs; and (2) a machine learning binary classifier which trains eXtreme Gradient Boosting models on variant features such as quality and trinucleotide context. Each approach outperforms fixed-cut-off filtering of iSNVs, and performance is enhanced when both are used together. Our results provide improved methods for identifying true iSNVs in within-host applications across sequencing platforms, specifically using HPV18 as a case study.

Virology↗
DOE OSTI2023

Cooling Strategies for an Electric Motor with Additively Manufactured Hollow Conductors and Distributed Power Electronics Integrated with Heat Pipes

This paper discusses design tradeoffs and thermal modeling explored in cooling strategies for an aircraft propulsion electric motor with additively manufactured coils and distributed power electronics integrated with heat pipes. Design tradeoffs include heat pipe Qmax performance related to inclination, condenser configuration, coolant type, coolant flow path complexity, and ease of access to modular power electronics. Three cooling strategies were selected and realized into CAD models. These models were further evaluated using 3D thermal FEA and optimization tools to explore cooling geometry details that include fin thickness, spacing and count with the objective to minimize fin mass under a set of constraints. Lastly, motorette test data is presented comparing air versus liquid cooling of heat pipes.

additive manufacturing↗
DOE OSTI2023

TRINIDI: Time-of-Flight Resonance Imaging With Neutrons for Isotopic Density Inference

Accurate reconstruction of 2D and 3D isotope densities is a desired capability with great potential impact in applications such as evaluation and development of next-generation nuclear fuels. Neutron time-of-flight (TOF) resonance imaging offers a potential approach by exploiting the characteristic neutron absorption spectra of each isotope. However, it is a major challenge to compute quantitatively accurate images due to a variety of confounding effects such as severe Poisson noise, background scatter, beam non-uniformity, absorption non-linearity, and extended source pulse duration. We present the TRINIDI algorithm which is based on a two-step process in which we first estimate the neutron flux and background counts, and then reconstruct the areal densities of each isotope and pixel. Both components are based on the inversion of a forward model that accounts for the highly non-linear absorption, energy-dependent emission profile, and Poisson noise, while also modeling the substantial spatio-temporal variation of the background and flux. Further, to do this, we formulate the non-linear inverse problem as two optimization problems that are solved in sequence. We demonstrate on both synthetic and measured data that TRINIDI can reconstruct quantitatively accurate 2D views of isotopic areal density that can then be reconstructed into quantitatively accurate 3D volumes of isotopic volumetric density.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗
DOE OSTI2016

SU-F-T-479: Estimation of the Accuracy in Respiratory-Gated Radiotherapy

Purpose: Irregular respiratory patterns affects dose outputs in respiratorygated radiotherapy and there is no commercially available quality assurance (QA) system for it. We designed and developed a patient specific QA system for respiratory-gated radiotherapy to estimate irradiated output. Methods: Our in-house QA system for gating was composed of a personal computer with the USB-FSIO electronic circuit connecting to the linear accelerator (ONCOR-K, Toshiba Medical Systems). The linac implements a respiratory gating system (AZ-733V, Anzai Medical). During the beam was on, 4.2 V square-wave pulses were continually sent to the system. Our system can receive and count the pulses. At first, our system and an oscilloscope were compared to check the performance of our system. Next, basic estimation models were generated when ionization-chamber measurements were performed in gating using regular sinusoidal wave patterns (2.0, 2.5, 4.0, 8.0, 15 sec/cycle). During gated irradiation with the regular patterns, the number of the pulses per one gating window was measured using our system. Correlation between the number of the pulses per one gating and dose per the gating window were assessed to generate the estimation model. Finally, two irregular respiratory patterns were created and the accuracy of the estimation was evaluated. Results: Compared to the oscilloscope, our system worked similarly. The basic models were generated with the accuracy within 0.1%. The results of the gated irradiations with two irregular respiratory patterns show good agreement within 0.4% estimation accuracy. Conclusion: Our developed system shows good estimation for even irregular respiration patterns. The system would be a useful tool to verify the output for respiratory-gated radiotherapy.

60 APPLIED LIFE SCIENCES↗
DOE OSTI2018

Modeling Large-Scale Slim Fly Networks Using Parallel Discrete-Event Simulation

As supercomputers approach exascale performance, the increased number of processors translates to an increased demand on the underlying network interconnect. We present that the slim fly network topology, a new low-diameter, low-latency, and low-cost interconnection network, is gaining interest as one possible solution for next-generation supercomputing interconnect systems. In this article, we present a high-fidelity slim fly packet-level model leveraging the Rensselaer Optimistic Simulation System (ROSS) and Co-Design of Exascale Storage (CODES) frameworks. We validate the model with published work before scaling the network size up to an unprecedented 1 million compute nodes and confirming that the slim fly observes peak network throughput at extreme scale. In addition to synthetic workloads, we evaluate large-scale slim fly models with real communication workloads from applications in the Design Forward program with over 110,000 MPI processes. We show strong scaling of the slim fly model on an Intel cluster achieving a peak network packet transfer rate of 2.3 million packets per second and processing over 7 billion discrete events using 128 MPI tasks. Enabled by the strong performance capabilities of the model, we perform a detailed application trace and routing protocol performance study. Lastly, through analysis of metrics such as packet latency, hop count, and congestion, we find that the slim fly network is able to leverage simple minimal routing and achieve the same performance as more complex adaptive routing for tested DOE benchmark applications.

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2011

Lead Slowing-Down Spectrometry for Spent Fuel Assay: FY11 Status Report

Executive Summary Developing a method for the accurate, direct, and independent assay of the fissile isotopes in bulk materials (such as used fuel) from next-generation domestic nuclear fuel cycles is a goal of the Office of Nuclear Energy, Fuel Cycle R&D, Material Protection and Control Technology (MPACT) Campaign. To meet this goal, MPACT supports a multi-institutional collaboration to study the feasibility of Lead Slowing Down Spectroscopy (LSDS). This technique is an active nondestructive assay method that has the potential to provide independent, direct measurement of Pu and U isotopic masses in used fuel with an uncertainty considerably lower than the approximately 10% typical of today’s confirmatory assay methods. This document is a progress report for FY2011 collaboration activities. Progress made by the collaboration in FY2011 continues to indicate the promise of LSDS techniques applied to used fuel. PNNL developed an empirical model based on calibration of the LSDS to responses generated from well-characterized used fuel. The empirical model demonstrated the potential for the direct and independent assay of the sum of the masses of 239Pu and 241Pu to within approximately 3% over a wide used fuel parameter space. Similar results were obtained using a perturbation approach developed by LANL. Benchmark measurements have been successfully conducted at LANL and at RPI using their respective LSDS instruments. The ISU and UNLV collaborative effort is focused on the fabrication and testing of prototype fission chambers lined with ultra-depleted 238U and 232Th, and uranium deposition on a stainless steel disc using spiked U3O8 from room temperature ionic liquid was successful, with improving thickness obtained. In FY2012, the collaboration plans a broad array of activities. PNNL will focus on optimizing its empirical model and minimizing its reliance on calibration data, as well continuing efforts on developing an analytical model. Additional measurements are planned at LANL and RPI. LANL measurements will include a Pu sample, which is expected to provide more counts at longer slowing-down times to help identify discrepancies between experimental data and MCNPX simulations. RPI measurements will include the assay of an entire fresh fuel assembly for the study of self-shielding effects as well as the ability to detect diversion by detecting a missing fuel pin in the fuel assembly. The development of threshold neutron sensors will continue, and UNLV will calibrate existing ultra-depleted uranium deposits at ISU.

11 NUCLEAR FUEL CYCLE AND FUEL MATERIALS↗
DOE OSTI2020

AWCC Simulations

Neutron well counters provide a means to measure fissile mass by detecting coincident neutrons, which is a unique signature to fission. For coincidence counting, mass is determined using a calibration curve established with items that have the same material characteristics. Multiplicity analysis solves the point model equations for mass using known detector parameters. In both cases, mass measurements may exhibit a bias due to item characteristics and should be corrected for. Experiments can be done to estimate bias and material effects, but they require having both the well counter and the material well defined. In pursuit of estimating measurement bias and uncertainty in a High Efficiency Neutron Counter (HENC), an MCNP simulation was matched to measurements performed with an Active Well Coincidence Counter (AWCC) to de ne a neutron source term. The neutron source term will be used to predict measurement performance of similar material types in a HENC.

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗
DOE OSTI2024

Privacy-Preserving Real-Time Action Detection in Intelligent Vehicles Using Federated Learning-Based Temporal Recurrent Network

This study introduces a privacy-preserving approach for the real-time action detection in intelligent vehicles using a federated learning (FL)-based temporal recurrent network (TRN). This approach enables edge devices to independently train models, enhancing data privacy and scalability by eliminating central data consolidation. Our FL-based TRN effectively captures temporal dependencies, anticipating future actions with high precision. Extensive testing on the Honda HDD and TVSeries datasets demonstrated robust performance in centralized and decentralized settings, with competitive mean average precision (mAP) scores. The experimental results highlighted that our FL-based TRN achieved an mAP of 40.0% in decentralized settings, closely matching the 40.1% in centralized configurations. Notably, the model excelled in detecting complex driving maneuvers, with mAPs of 80.7% for intersection passing and 78.1% for right turns. These outcomes affirm the model’s accuracy in action localization and identification. The system showed significant scalability and adaptability, maintaining robust performance across increased client device counts. The integration of a temporal decoder enabled predictions of future actions up to 2 s ahead, enhancing the responsiveness. Our research advances intelligent vehicle technology, promoting safety and efficiency while maintaining strict privacy standards.

33 ADVANCED PROPULSION SYSTEMS↗
DOE OSTI2016

THE CHANDRA COSMOS-LEGACY SURVEY: THE z > 3 SAMPLE

We present the largest high-redshift (3 < z < 6.85) sample of X-ray-selected active galactic nuclei (AGNs) on a contiguous field, using sources detected in the Chandra COSMOS-Legacy survey. The sample contains 174 sources, 87 with spectroscopic redshift and the other 87 with photometric redshift (z {sub phot}). In this work, we treat z {sub phot} as a probability-weighted sum of contributions, adding to our sample the contribution of sources with z {sub phot} < 3 but z {sub phot} probability distribution >0 at z > 3. We compute the number counts in the observed 0.5–2 keV band, finding a decline in the number of sources at z > 3 and constraining phenomenological models of the X-ray background. We compute the AGN space density at z > 3 in two different luminosity bins. At higher luminosities (log L (2–10 keV) > 44.1 erg s{sup −1}), the space density declines exponentially, dropping by a factor of ∼20 from z ∼ 3 to z ∼ 6. The observed decline is ∼80% steeper at lower luminosities (43.55 erg s{sup −1} < logL(2–10 keV) < 44.1 erg s{sup −1}) from z ∼ 3 to z ∼ 4.5. We study the space density evolution dividing our sample into optically classified Type 1 and Type 2 AGNs. At log L (2–10 keV) > 44.1 erg s{sup −1}, unobscured and obscured objects may have different evolution with redshift, with the obscured component being three times higher at z ∼ 5. Finally, we compare our space density with predictions of quasar activation merger models, whose calibration is based on optically luminous AGNs. These models significantly overpredict the number of expected AGNs at log L (2–10 keV) > 44.1 erg s{sup −1} with respect to our data.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2024

Chemical clocks: using otolith geochemistry to enhance estimation of age and growth of white hake (Urophycis tenuis)

The white hake (Urophycis tenuis) is a groundfish distributed throughout the Gulf of Maine. Catch advice is based on stock assessments done with age-based population dynamics models; however, otolith aging is challenging because of unclear growth increments. To address this concern, we compared the consistency of aging with counts of visual annuli to that of aging with cycles of elemental concentrations measured by using laser ablation inductively coupled plasma mass spectrometry. We tested the hypothesis that oscillations in both environmental conditions and internal physiology through time influence uptake of elements during otolith mineralization. Concentrations of manganese, in comparison with those of the other investigated trace elements (magnesium, strontium, and barium), had the most promising correlation with visual growth increments (~100% age agreement, ±1 year), offering an additional tool to enhance increment identification. In our examination of 550 otoliths collected during 2007–2021, we found that white hake lived a maximum of 10.3 years and exhibited sexual dimorphism in maximum length and age. By using generated von Bertalanffy growth functions, L(t)=110(1–e–0.113(t+0.45)) for males and L(t)=140(1–e–0.113(t–0.30)) for females (where L(t) is length at time t), size and age at maturity were calculated for males (37.4 cm in total length (TL), 3.3 years) and females (47.4 cm TL, 4.2 years). These results demonstrate that otolith geochemistry can be used to improve the accuracy and precision of the estimation of fish age and maturity, even for challenging species.

59 BASIC BIOLOGICAL SCIENCES↗
NASA NTRS1971

X-ray observation of a new soft source in Cygnus.

The location of the new X-ray source, designated Cygnus X-6, is discussed. The polycarbonate window counter detected Cyg X-6 only in the pulse-height interval from 0.5 to 1.3 keV. A total of 44 counts was acquired from the source above a diffuse X-ray and non-X-ray background of 18 plus or minus 3 counts. The polycarbonate pulse-height spectrum for Cyg X-6 is presented together with the calculated counter response to three different model source spectra.

Coleman, P. L.↗
NASA NTRS1980

Potential release of fibers from burning carbon composites

A comprehensive experimental carbon fiber source program was conducted to determine the potential for the release of conductive carbon fibers from burning composites. Laboratory testing determined the relative importance of several parameters influencing the amounts of single fibers released, while large-scale aviation jet fuel pool fires provided realistic confirmation of the laboratory data. The dimensions and size distributions of fire-released carbon fibers were determined, not only for those of concern in an electrical sense, but also for those of potential interest from a health and environmental standpoint. Fire plume and chemistry studies were performed with large pool fires to provide an experimental input into an analytical modelling of simulated aircraft crash fires. A study of a high voltage spark system resulted in a promising device for the detection, counting, and sizing of electrically conductive fibers, for both active and passive modes of operation.

Bell, V. L.↗
NASA NTRS1983

Analysis of complete quasar samples to obtain parameters of luminosity and evolution functions

A parametric likelihood analysis of the joint redshift-luminosity distribution is presented for a composite, complete sample of 32 quasars with B between 17.0 and 19.2 selected on the basis of ultraviolet excess. Best estimates and joint confidence regions are determined for the parameters of several models of the quasar optical luminosity and evolution function. These models are also tested explicitly for their acceptability. A steeper luminosity function is found than was found for previous samples. A model invoking pure density evolution is rejected on the basis of its extrapolation to fainter magnitudes through comparisons with the optical number counts and independently with the observed 2 keV X-ray background. Assuming an average value for L(x)/L(opt), the contribution of quasars to the X-ray background at 2 keV is discussed.

Marshall, H. L.↗
NASA NTRS1987

On-board processing satellite network architecture and control study

For satellites to remain a vital part of future national and international communications, system concepts that use their inherent advantages to the fullest must be created. Network architectures that take maximum advantage of satellites equipped with onboard processing are explored. Satellite generations must accommodate various services for which satellites constitute the preferred vehicle of delivery. Such services tend to be those that are widely dispersed and present thin to medium loads to the system. Typical systems considered are thin and medium route telephony, maritime, land and aeronautical radio, VSAT data, low bit rate video teleconferencing, and high bit rate broadcast of high definition video. Delivery of services by TDMA and FDMA multiplexing techniques and combinations of the two for individual and mixed service types are studied. The possibilities offered by onboard circuit switched and packet switched architectures are examined and the results strongly support a preference for the latter. A detailed design architecture encompassing the onboard packet switch and its control, the related demand assigned TDMA burst structures, and destination packet protocols for routing traffic are presented. Fundamental onboard hardware requirements comprising speed, memory size, chip count, and power are estimated. The study concludes with identification of key enabling technologies and identifies a plan to develop a POC model.

Campanella, S. Joseph↗
NASA NTRS1992

ROSAT all-sky survey on the Einstein EMSS sample

The cosmological evolution and the luminosity function (XLF) of X ray selected Active Galactic Nuclei (AGN's) are discussed. The sample used is extracted from the Einstein Observatory Extended Medium Sensitivity Surveys (EMSS) and consists of more than 420 objects. Preliminary results from the ROSAT All-Sky Survey data confirm the correctness of the optical identification of the EMSS sources, thus giving confidence to the results obtained from the analysis of the AGN's sample. The XLF observed at different redshifts (up to z approx. 2) gives direct evidence of cosmological evolution. Data have been analyzed within the framework of luminosity evolution models and the two most common evolutionary forms, L sub x(Z) = L sub x(0) x e(sup Cr) and L sub x(Z) = L sub x(0) x (1 + z)(exp C), have been considered. Luminosity dependent evolution is required if the evolution function has the exponential form, whereas the simpler pure luminosity evolution model is still acceptable if the evolution function has the power law form. Using the whole sample of objects the number-counts and the de-evolved (z = 0) XLF have been derived. A comparison of the EMSS data with preliminary ROSAT results presented at this meeting indicates an overall agreement.

Maccacaro, Tomasso↗
NASA NTRS2001

Theory for broadband Noise of Rotor and Stator Cascades with Inhomogeneous Inflow Turbulence Including Effects of Lean and Sweep

The problem of broadband noise generated by turbulence impinging on a downstream blade row is examined from a theoretical viewpoint. Equations are derived for sound power spectra in terms of 3 dimensional wavenumber spectra of the turbulence. Particular attention is given to issues of turbulence inhomogeneity associated with the near field of the rotor and variations through boundary layers. Lean and sweep of the rotor or stator cascade are also handled rigorously with a full derivation of the relevant geometry and definitions of lean and sweep angles. Use of the general theory is illustrated by 2 simple theoretical spectra for homogeneous turbulence. Limited comparisons are made with data from model fans designed by Pratt & Whitney, Allison, and Boeing. Parametric studies for stator noise are presented showing trends with Mach number, vane count, turbulence scale and intensity, lean, and sweep. Two conventions are presented to define lean and sweep. In the "cascade system" lean is a rotation out of its plane and sweep is a rotation of the airfoil in its plane. In the "duct system" lean is the leading edge angle viewing the fan from the front (along the fan axis) and sweep is the angle viewing the fan from the side (,perpendicular to the axis). It is shown that the governing parameter is sweep in the plane of the airfoil (which reduces the chordwise component of Mach number). Lean (out of the plane of the airfoil) has little effect. Rotor noise predictions are compared with duct turbulence/rotor interaction noise data from Boeing and variations, including blade tip sweep and turbulence axial and transverse scales are explored.

Hanson, Donald B.↗
NASA NTRS1997

Effect of atrophy and contractions on myogenin mRNA concentration in chick and rat myoblast omega muscle cells

The skeletal rat myoblast omega (RMo) cell line forms myotubes that exhibit spontaneous contractions under appropriate conditions in culture. We examined if the RMo cells would provide a model for studying atrophy and muscle contraction. To better understand how to obtain contractile cultures, we examined levels of contraction under different growing conditions. The proliferation medium and density of plating affected the subsequent proportion of spontaneously contracting myotubes. Using a ribonuclease protection assay, we found that exponentially growing RMo myoblasts contained no detectable myogenin or herculin mRNA, while differentiating myoblasts contained high levels of myogenin mRNA but no herculin mRNA. There was no increase in myogenin mRNA concentration in either primary chick or RMo myotubes whose contractions were inhibited by depolarizing concentrations of potassium (K+). Thus, altered myogenin mRNA concentrations are not involved in atrophy of chick myotubes. Depolarizing concentrations of potassium inhibited spontaneous contractions in both RMo cultures and primary chick myotube cultures. However, we found that the myosin concentration of 6-d-old contracting RMo cells fed medium plus AraC was 11 +/- 3 micrograms myosin/microgram DNA, not significantly different from 12 +/- 4 micrograms myosin/microgram DNA (n = 3), the myosin concentration of noncontracting RMo cells (treated with 12 mM K+ for 6 d). Resolving how RMo cells maintained their myosin content when contraction is inhibited may be important for understanding atrophy.

Muscular Atrophy↗
NASA NTRS2018

In-Flight Calibration of Hitomi Soft X-Ray Spectrometer (3) Effective Area

We present the result of the in-flight calibration of the effective area of the Soft X-ray Spectrometer (SXS) on board the Hitomi X-ray satellite using an observation of the Crab nebula. We corrected for artifacts when observing high count rate sources with the X-ray microcalorimeter. We then constructed a spectrum in the 0.5–20 keV band, which we modeled with a single power-law continuum attenuated by interstellar extinction. We evaluated the systematic uncertainty of the spectral parameters by various calibration items. In the 2–12 keV band, the SXS result is consistent with the literature values in flux (2.20 ± 0.08 × 10(exp −8) erg s(exp-1) cm(exp −2) with a 1 σ statistical uncertainty) but is softer in the power-law index (2.19 ± 0.11). The discrepancy is attributable to the systematic uncertainty of about +6%/−7% and +2%/−5% respectively for the flux and the power-law index. The softer spectrum is affected primarily by the systematic uncertainty of the Dewar gate valve transmission and the event screening.

Tsujimoto, Masahiro↗