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At least 1,099 records · Page 61

Uncovering dark multichromophoric states in Peridinin–Chlorophyll–Protein

It has long been recognized that visible light harvesting in Peridinin–Chlorophyll–Protein is driven by the interplay between the bright (S 2 ) and dark (S 1 ) states of peridinin (carotenoid), along with the lowest-lying bright (Q y ) and dark (Q x ) states of chlorophyll-a. Here, we analyse a chromophore cluster in the crystal structure of Peridinin–Chlorophyll–Protein, in particular, a peridinin–peridinin and a peridinin–chlorophyll-a dimer, and present quantum chemical evidence for excited states that exist beyond the confines of single peridinin and chlorophyll chromophores. These dark multichromophoric states, emanating from the intermolecular packing native to Peridinin–Chlorophyll–Protein, include a correlated triplet pair comprising neighbouring peridinin excitations and a charge-transfer interaction between peridinin and the adjacent chlorophyll-a. Lastly, we surmise that such dark multichromophoric states may explain two spectral mysteries in light-harvesting pigments: the sub-200-fs singlet fission observed in carotenoid aggregates, and the sub-200-fs chlorophyll-a hole generation in Peridinin–Chlorophyll–Protein.

59 BASIC BIOLOGICAL SCIENCES↗

Influence of Long-Range Forces on the Transition States and Dynamics of NaCl Ion-Pair Dissociation in Water

We study NaCl ion-pair dissociation in a dilute aqueous solution using computer simulations both for the full system with long-range Coulomb interactions and for a well-chosen reference system with short-range intermolecular interactions. Analyzing results using concepts from Local Molecular Field (LMF) theory and the recently proposed AI-based analysis tool “State predictive information bottleneck” (SPIB), we show that the system with short-range interactions can accurately reproduce the transition rate for the dissociation process, the dynamics for moving between the underlying metastable states, and the transition state ensemble. Contributions from long-range interactions can be largely neglected for these processes because long-range forces from the direct interionic Coulomb interactions are almost completely canceled (>90%) by those from solvent interactions over the length scale where the transition takes place. Thus, for this important monovalent ion-pair system, short-range forces alone are able to capture detailed consequences of the collective solvent motion, allowing the use of physically suggestive and computationally efficient short-range models for the dissociation event. Here, we believe that the framework here should be applicable to disentangling mechanisms for more complex processes such as multivalent ion disassociation, where previous work has suggested that long-range contributions may be more important.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Numerical simulation of crossing/turbulent boundary layer interaction at Mach 8.3 comparison of zero and two-equation turbulence models

A 3D hypersonic crossing shock wave/turbulent boundary layer interaction is examined numerically. The test geometry consists of a pair of opposing sharp fins of angle alpha = 15 deg mounted on a flat plate. The freestream Mach number is 8.28. Two theoretical models are evaluated. The full 3D Reynolds-averaged Navier-Stokes equations are solved using the Baldwin-Lomax algebraic turbulent eddy viscosity model and the Rodi turbulence model. Computed results for both cases show good agreement with experiment for flat plate surface pressure and for pitot pressure and yaw angle profiles in the flowfield. General agreement is obtained for surface flow direction. Fair to poor agreement is obtained for surface heat transfer, indicating a need for more accurate turbulence models. The overall flowfield structure is similar to that observed in previous crossing shock interaction studies.

Narayanswami, N.↗

Nuclear shell structure governs short-range nucleon pairing

Atomic nuclei are intricate quantum systems in which nucleons (protons and neutrons) are held together by the strong nuclear force. At very short distances, nucleons can momentarily form high-momentum pairs—known as short-range-correlated pairs—that shape the high-momentum structure of nuclear matter. Studying how nucleons form short-range-correlated pairs provides a rare experimental window into the short-distance behaviour of the strong interaction. Here, in this study, we use the scattering of high-energy electrons from 40 Ca, 48 Ca and 54 Fe, chosen for their distinct shell structures, to probe the formation of short-range-correlated pairs. Unexpectedly, we find that short-range-correlated pairing depends far more on the specific quantum orbitals occupied by protons and neutrons than on the nuclear mass or neutron–proton imbalance. This dependence is much stronger than that predicted by theoretical models. Our results point to a need for new angular-momentum quantum selection rules governing short-range nucleon pairing and reveal a deep connection between long-range nuclear shell structure and short-range interactions.

Nguyen, D. [Thomas Jefferson National Accelerator ↗

Solitary Rossby waves in zonal shear flows and their interactions

Interactions of long-wave solitons propagating in shear flows are described by a coupled pair of Korteweg-de Vries equations. The basic equation of motion for the analysis is the quasi-geostrophic forecast equation, and the interaction of two wave modes is studied. The solution for mode 1-mode 2 interaction of solitary waves in an asymmetric shear flow of a barotropic atmosphere with divergence is constructed. Streamline patterns for certain flows are obtained. An unsteady solitary wave solution for a modified Korteweg-de Vries equation is derived.

Redekopp, L. G.↗

Self‐Healable Poly(ionic liquid) Copolymers Driven by Polar and Dipolar Forces

Abstract Commodity aliphatic and aromatic acrylic‐based copolymers self‐heal due to ubiquitouskey‐and‐lock,ring‐and‐lock, andfluorophilic‐σ‐lockvan der Waals (vdW) interactions. However, the role of these interactions in the presence of covalently copolymerized ionic liquid (IL) is not known. This study is driven by the hypothesis that covalently incorporated cation–anion pairs to form poly(ionic liquid) copolymers (PILCs) can perturb inter‐ or intra‐chain vdW interactions reflected in mechanical and electrical responses. To test this hypothesis, we synthesized a series of PILCs comprising of pentafluorostyrene (PFS) and imidazolium‐based IL monomers with variable‐length aliphatic tails (methyl and butyl). Using a combination of 2D 1 H‐ 1 H and 19 F ‐ 19 F NOESY NMR and FTIR measurements supplemented by molecular dynamic (MD) simulations, these studies demonstrate that preferentially alternating/random PILCs topologies facilitate self‐healing. The introduction of cation–anion moieties modifies thefluorophilic‐σ‐lockinteractions and, along with longer aliphatic tails ─(CH 2 ) 3 CH 3 covalently attached to the imidazolium cation, enhances cation‐anion mobility, thus faster recovery from mechanical damage occurs. These findings underline how precise control over dipolar and ionic interactions through copolymer composition enables self‐healing in PILCs. These insights may open pathways for designing sustainable, mechanically resilient materials for applications in energy storage and energy harvesting.

Chemistry↗

Temperature Dependence of Paramagnetic Critical Magnetic Field in Disordered Attractive Hubbard Model

Within the generalized DMFT+Σ approach, we study disorder effects in the temperature dependence of paramagnetic critical magnetic field H{sub cp}(T) for Hubbard model with attractive interaction. We consider the wide range of attraction potentials U—from the weak coupling limit, when superconductivity is described by BCS model, up to the limit of very strong coupling, when superconducting transition is related to Bose–Einstein condensation (BEC) of compact Cooper pairs. The growth of the coupling strength leads to the rapid growth of H{sub cp}(T) at all temperatures. However, at low temperatures, paramagnetic critical magnetic field H{sub cp} grows with U much more slowly, than the orbital critical field, and in BCS limit, the main contribution to the upper critical magnetic filed is of paramagnetic origin. The growth of the coupling strength also leads to the disappearance of the low temperature region of instability towards type I phase transition and Fulde–Ferrell–Larkin–Ovchinnikov (FFLO) phase, characteristic of BCS weak coupling limit. Disordering leads to the rapid drop of H{sub cp}(T) in BCS weak coupling limit, while in BCS–BEC crossover region and BEC limit H{sub cp}(T → 0) dependence on disorder is rather weak. Within DMFT+Σ approach, disorder influence on H{sub cp}(T) is of universal nature at any coupling strength and is related only to disorder widening of the conduction band. In particular, this leads to the drop of the effective coupling strength with disorder, so that disordering restores the region of type I transition in the intermediate coupling region.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

Mapping the electromagnetic fields of heavy-ion collisions with the Breit-Wheeler process

Ultra-relativistic heavy-ion collisions are expected to produce the strongest electromagnetic fields in the known Universe. These highly-Lorentz contracted fields can manifest themselves as linearly polarized quasi-real photons that can interact via the Breit-Wheeler process to produce lepton anti-lepton pairs. Furthermore, the energy and momentum distribution of the produced dileptons carry information about the strength and spatial distribution of the colliding fields. Recently it has been demonstrated that photons from these fields can interact even in heavy-ion collisions with hadronic overlap, providing a purely electromagnetic probe of the produced medium. In this review we discuss the recent theoretical progress and experimental advances for mapping the ultra-strong electromagnetic fields produced in heavy-ion collisions via measurement of the Breit-Wheeler process.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Polarizability Plays a Decisive Role in Modulating Association between Molecular Cations and Anions

Electrostatic interactions involving proteins depend on not only the ionic charges involved but also their chemical identities. Here we examine the origins of incompletely understood differences in the strength of association of different pairs of monovalent molecular ions that are relevant to protein–protein and protein–ligand interactions. Cationic analogues of the basic amino acid side chains are simulated, along with oxyanionic analogues of cation-exchange ligands and acidic amino acids. Experimentally observed association trends with respect to the cations, but not anions, are captured by a nonpolarizable model. An effective continuum correction to account for electronic polarizability can capture both trends better but at the expense of fidelity to the underlying free energy landscape for ion-pair association. Finally, a polarizable model proves decisive in capturing experimentally suggested trends with respect to both cations and anions; critically, the free energy landscape for ion-pair association is itself altered, thus altering configurational sampling.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Equilibrium, metastability, and hysteresis in a model spin-crossover material with nearest-neighbor antiferromagnetic-like and long-range ferromagnetic-like interactions

Phase diagrams and hysteresis loops were obtained by Monte Carlo simulations and a mean- field method for a simplified model of a spin-crossovermaterialwith a two-step transition between the high-spin and low-spin states. This model is a mapping onto a square-lattice S = 1/2 Ising model with antiferromagnetic nearest-neighbor and ferromagnetic Husimi-Temperley ( equivalent-neighbor) long-range interactions. Phase diagrams obtained by the two methods for weak and strong long-range interactions are found to be similar. However, for intermediate-strength long-range interactions, the Monte Carlo simulations show that tricritical points decompose into pairs of critical end points and mean-field critical points surrounded by horn-shaped regions of metastability. Hysteresis loops along paths traversing the horn regions are strongly reminiscent of thermal two-step transition loops with hysteresis, recently observed experimentally in several spin-crossover materials. As a result, we believe analogous phenomena should be observable in experiments and simulations for many systems that exhibit competition between local antiferromagnetic-like interactions and long-range ferromagnetic-like interactions caused by elastic distortions.

36 MATERIALS SCIENCE↗

Sublattice modulated superconductivity in the kagome Hubbard model

Here we identify a superconducting order featuring spatial pair modulations on the kagome lattice subject to onsite Hubbard U and nearest neighbor V interactions. Within our functional renormalization group analysis, this state appears with a concomitant d-wave superconducting (SC) instability at zero lattice momentum, where it distinguishes itself through intra-unit cell modulations of the pairing function thus breaking the discrete space group symmetry. The relative weight of the sublattice modulated superconductor (SMS) and d-wave SC is influenced by the absolute interaction strength and coupling ratio V/U. Parametrically adjacent to this domain at weak coupling, we find an intra-unit cell modulated vestigial charge density wave and an s-wave SC instability. Our study provides a microscopic setting and thorough description of this novel SMS arising within a translation symmetry broken background.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

Time-Reversal Symmetry-Breaking Nematic Insulators near Quantum Spin Hall Phase Transitions

We study the phase diagram of a model quantum spin Hall system as a function of band inversion and band-coupling strength, demonstrating that when band hybridization is weak, an interaction-induced nematic insulator state emerges over a wide range of band inversion. This property is a consequence of the long-range Coulomb interaction, which favors interband phase coherence that is weakly dependent on momentum and therefore frustrated by the single-particle Hamiltonian at the band inversion point. For weak band hybridization, interactions convert the continuous gap closing topological phase transition at inversion into a pair of continuous phase transitions bounding a state with broken time-reversal and rotational symmetries. At intermediate band hybridization, the topological phase transition proceeds instead via a quantum anomalous Hall insulator state, whereas at strong hybridization interactions play no role. We comment on the implications of our findings for InAs/GaSb and HgTe/CdTe quantum spin Hall systems.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Synchronization of Alternative Models in a Supermodel and the Learning of Critical Behavior

“Supermodeling” climate by allowing different models to assimilate data from one another in run time has been shown to give results superior to those of any one model and superior to any weighted average of model outputs. The only free parameters, connection strengths between corresponding variables in each pair of models, are determined using some form of machine learning. It is demonstrated that supermodeling succeeds because near critical states, interscale interactions are important but unresolved processes cannot be effectively represented diagnostically in any single parameterization scheme. In two examples, a pair of toy quasigeostrophic (QG) channel models of the midlatitudes and a pair of ECHAM5 models of the tropical Pacific atmosphere with a common ocean, supermodels dynamically combine parameterization schemes so as to capture criticality, associated critical structures, and the supporting scale interactions. The QG supermodeling scheme extends a previous configuration in which two such models synchronize with intermodel connections only between medium-scale components of the flow; here the connections are trained against a third “real” model. Intermittent blocking patterns characterize the critical behavior thus obtained, even where such patterns are missing in the constituent models. In the ECHAM-based climate supermodel, the corresponding critical structure is the single ITCZ pattern, a pattern that occurs in neither of the constituent models. In conclusion, for supermodels of both types, power spectra indicate enhanced interscale interactions in frequency or energy ranges of physical interest, in agreement with observed data, and supporting a generalized form of the self-organized criticality hypothesis.

54 ENVIRONMENTAL SCIENCES↗

Superconductivity in the bilayer Hubbard model: Two Fermi surfaces are better than one

Fully occupied or unoccupied bands in a solid are often considered inert and irrelevant to a material's low-energy properties. But the discovery of enhanced superconductivity in heavily electron-doped FeSe-derived superconductors poses questions about the possible role of incipient bands (those laying close to but not crossing the Fermi level) in pairing. To answer this question, researchers have studied pairing correlations in the bilayer Hubbard model, which has an incipient band for large interlayer hopping t⊥, using many-body perturbation theory and variational methods. They have generally found that superconductivity is enhanced as one of the bands approaches the Lifshitz transition and even when it becomes incipient. Here we address this question using the nonperturbative quantum Monte Carlo (QMC) dynamical cluster approximation (DCA) to study the bilayer Hubbard model's pairing correlations. We find that the model has robust s± pairing correlations in the large t⊥ limit, which can become stronger as one band is made incipient. While this behavior is linked to changes in the effective interaction, we further find that it is counteracted by a suppression of the intrinsic pair-field susceptibility and does not translate to an increased Tc. Our results demonstrate that the highest achievable transition temperatures in the bilayer Hubbard model occur when the system has two bands crossing the Fermi level.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

Out-of-plane polarization and topological magnetic vortices in multiferroic CrPSe 3

Two-dimensional multiferroic materials are ideal systems for exploring new coupling mechanisms between different ferroic orders and producing novel quantum phenomena with potential applications. Here we employ first-principles density functional theory calculations to discover intrinsic ferroelectric and antiferroelectric phases of Cr⁢P⁢Se 3 , which show ferromagnetic order and compete with the centrosymmetric phase with an antiferromagnetic order. Our analysis shows that the electrical dipoles of such type-I multiferroic phases come from the out-of-plane displacements of phosphorus ions due to the stereochemically active lone pairs. The coupling between polar and magnetic orders creates the opportunity for tuning the magnetic ground state by switching from the centrosymmetric to the ferroelectric phase using an out-of-plane electric field. In ferroelectric and antiferroelectric phases, the combination of easy-plane anisotropy and Dzyaloshinskii-Moriya interactions indicates that they can host topological magnetic vortices such as meron pairs.

36 MATERIALS SCIENCE↗

Rate Theory of Ion Pairing at the Water Liquid-Vapor Interface: A Case of Sodium Iodide

Studies of ion pairing at interfaces have been intensified recently because of their importance in many chemical reactive phenomena such as ion–ion interactions that are affected by interfaces and their influence on kinetic processes. In this study, we performed simulations to examine the thermodynamics and kinetics of small polarizable sodium iodide ions in the bulk and near the water liquid–vapor interface. Using classical transition state theory, we calculated the dissociation rates, and corrected them with transmission coefficients obtained from the reactive flux formalism and Grote-Hynes theory. Our results show that in addition to affecting the free energy of ions in solution, the interfacial environments significantly influence the kinetics of ion pairing. Results on the relaxation time obtained using the reactive flux formalism and Grote-Hynes theory present an unequivocal picture that the interface suppresses ion dissociation. The effects of the use of molecular models on the ion interactions as well as the ion-pair configurations at the interface also are quantified and discussed. Acknowledgments This work was supported by the U.S. Department of Energy, Office of Science, Office of Basic Energy Sciences, Division of Chemical Sciences, Geosciences, and Biosciences. The calculations were carried out using computer resources provided by the Office of Basic Energy Sciences.

Dang, Liem X.↗

Specific Ion Solvation and Pairing Effects in Glycerol Carbonate

Identifying the driving forces behind the solvation of inorganic salts by nonaqueous solvents is an important step in the development of green solvents. Here we focus on one promising solvent: glycerol carbonate (GC). Using ab initio molecular dynamics simulations, we build upon our previous work by detailing glycerol carbonate’s interactions with a series of anions, a lithium ion, and the LiF ion pair. Through these investigations, we highlight the changes in solvation behavior as the anion size increases, the competition of binding shown by lithium for the oxygens of GC, and the behavior of the LiF ion pair in a GC solution. These results in this work indicate the importance of the cation’s identity in ion-pairing structure and dynamics and lend insight into the key factors behind the specific ion effects seen in GC.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

AF2Complex predicts direct physical interactions in multimeric proteins with deep learning

Abstract Accurate descriptions of protein-protein interactions are essential for understanding biological systems. Remarkably accurate atomic structures have been recently computed for individual proteins by AlphaFold2 (AF2). Here, we demonstrate that the same neural network models from AF2 developed for single protein sequences can be adapted to predict the structures of multimeric protein complexes without retraining. In contrast to common approaches, our method, AF2Complex, does not require paired multiple sequence alignments. It achieves higher accuracy than some complex protein-protein docking strategies and provides a significant improvement over AF-Multimer, a development of AlphaFold for multimeric proteins. Moreover, we introduce metrics for predicting direct protein-protein interactions between arbitrary protein pairs and validate AF2Complex on some challenging benchmark sets and the E. coli proteome. Lastly, using the cytochrome c biogenesis system I as an example, we present high-confidence models of three sought-after assemblies formed by eight members of this system.

59 BASIC BIOLOGICAL SCIENCES↗