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At least 1,099 records · Page 61

Interactions of Ku70/80 with Double-Strand DNA: Energetic, Dynamics, and Functional Implications

Space radiation is a proficient inducer of DNA damage leading to mutation, aberrant cell signaling, and cancer formation. Ku is among the first responding proteins in nucleus to recognize and bind the DNA double strand breaks (DSBs) whenever they are introduced. Once loaded Ku works as a scaffold to recruit other repair factors of non-homologous end joining and facilitates the following repair processes. The crystallographic study of the Ku70/80 heterodimer indicate the core structure of this protein shows virtually no conformational change after binding with DNA. To investigate the dynamical features as well as the energetic characteristics of Ku-DNA binding, we conduct multi-nanosecond molecular dynamics simulations of a modeled Ku70/80 structure and several complexes with two 24-bp DNA duplexes. Free energy calculations show significant energy differences between the complexes with Ku bound at DSBs and those with Ku associated at an internal site of a chromosome. The results also reveal detailed interactions between different nucleotides and the amino acids along the DNA-binding cradle of Ku, indicating subtle binding preference of Ku at specific DNA sequences. The covariance matrix analyses along the trajectories demonstrate the protein is stimulated to undergo correlated motions of different domains once bound to DNA ends. Additionally, principle component analyses identify these low frequency collective motions suitable for binding with and translocation along duplex DNA. It is proposed that the modification of dynamical properties of Ku upon binding with DSBs may provide a signal for the further recruitment of other repair factors such as DNA-PKcs, XLF, and XRCC4.

Hu, Shaowen↗

Simulation studies using multibody dynamics code DART

DART is a multibody dynamics code developed by Photon Research Associates for the Air Force Astronautics Laboratory (AFAL). The code is intended primarily to simulate the dynamics of large space structures, particularly during the deployment phase of their missions. DART integrates nonlinear equations of motion numerically. The number of bodies in the system being simulated is arbitrary. The bodies' interconnection joints can have an arbitrary number of degrees of freedom between 0 and 6. Motions across the joints can be large. Provision for simulating on-board control systems is provided. Conservation of energy and momentum, when applicable, are used to evaluate DART's performance. After a brief description of DART, studies made to test the program prior to its delivery to AFAL are described. The first is a large angle reorientating of a flexible spacecraft consisting of a rigid central hub and four flexible booms. Reorientation was accomplished by a single-cycle sine wave shape torque input. In the second study, an appendage, mounted on a spacecraft, was slewed through a large angle. Four closed-loop control systems provided control of this appendage and of the spacecraft's attitude. The third study simulated the deployment of the rim of a bicycle wheel configuration large space structure. This system contained 18 bodies. An interesting and unexpected feature of the dynamics was a pulsing phenomena experienced by the stays whole playout was used to control the deployment. A short description of the current status of DART is given.

Keat, James E.↗

Resurrecting hot dark matter - Large-scale structure from cosmic strings and massive neutrinos

These are the results of a numerical simulation of the formation of large-scale structure from cosmic-string loops in a universe dominated by massive neutrinos (hot dark matter). This model has several desirable features. The final matter distribution contains isolated density peaks embedded in a smooth background, producing a natural bias in the distribution of luminous matter. Because baryons can accrete onto the cosmic strings before the neutrinos, the galaxies will have baryon cores and dark neutrino halos. Galaxy formation in this model begins much earlier than in random-phase models. On large scales the distribution of clustered matter visually resembles the CfA survey, with large voids and filaments.

Scherrer, Robert J.↗

Smooth Particle Hydrodynamic Code Predictions for Meteoroid Damage to Thermal Protection Systems Shielded By Composite Structures

Interplanetary spacecraft are exposed to meteoroid fluxes with characteristics far exceeding the physical simulation capabilities of test facilities for predicting the likelihood that a meteoroid will penetrate a spacecraft’s critical systems. Accurate risk predictions are crucial to ensuring that important interplanetary missions, such as sample returns, can survive years of exposure to the meteoroid environment and safely reenter the Earth’s atmosphere with their scientific cargo. In this paper, we summarize a series of meteoroid impact damage computational simulations into two types of spacecraft composite protective structures using the Smooth Particle Hydrodynamics Code. We consider the effects of both meteoric materials and non-meteoric materials on a shielded forebody thermal protection system (TPS) for an extreme entry environment and on an unshielded aftbody TPS that is similar to the material covering the space shuttle’s external tank.

Brooke Corbett↗

Techniques for hot structures testing

Hot structures testing have been going on since the early 1960's beginning with the Mach 6, X-15 airplane. Early hot structures test programs at NASA-Ames-Dryden focused on operational testing required to support the X-15 flight test program, and early hot structures research projects focused on developing lab test techniques to simulate flight thermal profiles. More recent efforts involved numerous large and small hot structures test programs that served to develop test methods and measurement techniques to provide data that promoted the correlation of test data with results from analytical codes. In Nov. 1988 a workshop was sponsored that focused on the correlation of hot structures test data with analysis. Limited material is drawn from the workshop and a more formal documentation is provided of topics that focus on hot structures test techniques used at NASA-Ames-Dryden. Topics covered include the data acquisition and control of testing, the quartz lamp heater systems, current strain and temperature sensors, and hot structures test techniques used to simulate the flight thermal environment in the lab.

Deangelis, V. Michael↗

Very high Mach number shocks - Theory

The theory and simulation of collisionless perpendicular supercritical shock structure is reviewed, with major emphasis on recent research results. The primary tool of investigation is the hybrid simulation method, in which the Newtonian orbits of a large number of ion macroparticles are followed numerically, and in which the electrons are treated as a charge neutralizing fluid. The principal results include the following: (1) electron resistivity is not required to explain the observed quasi-stationarity of the earth's bow shock, (2) the structure of the perpendicular shock at very high Mach numbers depends sensitively on the upstream value of beta (the ratio of the thermal to magnetic pressure) and electron resistivity, (3) two-dimensional turbulence will become increasingly important as the Mach number is increased, and (4) nonadiabatic bulk electron heating will result when a thermal electron cannot complete a gyrorbit while transiting the shock.

Quest, Kevin B.↗

Flight Test of an Adaptive Controller and Simulated Failure/Damage on the NASA NF-15B

The method of flight-testing the Intelligent Flight Control System (IFCS) Second Generation (Gen-2) project on the NASA NF-15B is herein described. The Gen-2 project objective includes flight-testing a dynamic inversion controller augmented by a direct adaptive neural network to demonstrate performance improvements in the presence of simulated failure/damage. The Gen-2 objectives as implemented on the NASA NF-15B created challenges for software design, structural loading limitations, and flight test operations. Simulated failure/damage is introduced by modifying control surface commands, therefore requiring structural loads measurements. Flight-testing began with the validation of a structural loads model. Flight-testing of the Gen-2 controller continued, using test maneuvers designed in a sequenced approach. Success would clear the new controller with respect to dynamic response, simulated failure/damage, and with adaptation on and off. A handling qualities evaluation was conducted on the capability of the Gen-2 controller to restore aircraft response in the presence of a simulated failure/damage. Control room monitoring of loads sensors, flight dynamics, and controller adaptation, in addition to postflight data comparison to the simulation, ensured a safe methodology of buildup testing. Flight-testing continued without major incident to accomplish the project objectives, successfully uncovering strengths and weaknesses of the Gen-2 control approach in flight.

Buschbacher, Mark↗

Molecular Dynamics Simulations of Carbon Nanotubes in Water

We study the hydrophobic/hydrophilic behavior of carbon nanotubes using molecular dynamics simulations. The energetics of the carbon-water interface are mainly dispersive but in the present study augmented with a carbon quadrupole term acting on the charge sites of the water. The simulations indicate that this contribution is negligible in terms of modifying the structural properties of water at the interface. Simulations of two carbon nanotubes in water display a wetting and drying of the interface between the nanotubes depending on their initial spacing. Thus, initial tube spacings of 7 and 8 A resulted in a drying of the interface whereas spacing of > 9 A remain wet during the course of the simulation. Finally, we present a novel particle-particle-particle-mesh algorithm for long range potentials which allows for general (curvilinear) meshes and "black-box" fast solvers by adopting an influence matrix technique.

Walther, J. H.↗

Vibration Penalty Estimates for Indoor Annoyance Caused by Sonic Boom

Commercial supersonic flight is currently forbidden over land because sonic booms have historically caused unacceptable annoyance levels in overflown communities. NASA is providing data and expertise to noise regulators as they consider relaxing the ban for future quiet supersonic aircraft. One key objective is a predictive model for indoor annoyance based on factors such as noise and indoor vibration levels. The current study quantified the increment in indoor sonic boom annoyance when sonic booms can be felt directly through structural vibrations in addition to being heard. A shaker mounted below each chair in the sonic boom simulator emulated vibrations transmitting through the structure to that chair. The vibration amplitudes were determined from numeric models of a large range of residential structures excited by the same sonic boom waveforms used in the experiment. The analysis yielded vibration penalties, which are the increments in sound level needed to increase annoyance as much as the vibration does. For sonic booms at acoustic levels from 75 to 84 dB Perceived Level, vibration signals with lower amplitudes (+1 sigma) yielded penalties from 0 to 5 dB, and vibration signals with higher amplitudes (+3 sigma) yielded penalties from 6 to 10 dB.

Rathsam, Jonathan↗

LaRC computational dynamics overview

Present research centers on the development of advanced computational methods for transient simulation analyses. Aircraft, launch vehicles and space structure components are potential applications, but primary focus is presently on large space structures. There are both in-house and out-of-house activities. The in-house activity centers around the development of a multibody simulation tool for truss-like structures called LATDYN for Large Angle Transient DYNamics. Multibody analysis involves articulation of structural components as well as robotic maneuvers. These items are necessary for construction (erection or deployment) of large space structures in orbit and the carrying out of certain operations on board the space station. Thus, part of the in-house activity involves the development of methods which treat the changing mass, stiffness and constraints associated with articulating systems. The out-of-house activity involves subcycling, development of large deformation/motion beam formulation, constraint stabilization and direct time integration transient algorithms in parallel computing.

Husner, J. M.↗

Fourier Analysis Of Vibrations Of Round Structures

Fourier-series representation developed for analysis of vibrations in complicated, round structures like turbopump impellers. Method eliminates guesswork involved in characterization of shapes of vibrational modes. Easy way to characterize complicated modes, leading to determination of responsiveness of given mode to various forcing functions. Used in conjunction with finite-element numerical simulation of vibrational modes of structure.

Davis, Gary A.↗

Wall-Modeled Large Eddy Simulations of Transonic Buffet Over a Supercritical Airfoil

A series of scale-resolving simulations of flow over the ONERA OAT15A airfoil have been performed at an angle of attack of 3.5◦, just past the onset of buffet. The focus of this study is to document the sensitivity of the wall-modeled large eddy simulation (WMLES) methodology for curvilinear structured overset grids within the Launch, Ascent, and Vehicle Aerodynamics (LAVA) framework to mesh spacing, mesh distribution, and domain size. A secondary purpose of the study is to compare the results from WMLES to unsteady Reynolds-averaged Navier Stokes (URANS) simulations and hybrid RANS-LES (HRLES) within the same LAVA solver framework. The study provides a unique perspective regarding comparisons between different turbulence modeling approaches, time-integration methods, and computational performance since many of the same numerical routines are used for all three types of simulations. The results are compared with experiments and previous numerical studies of the same geometry and flow conditions.

TTT↗

Simulation of Dynamic Crushing Behavior of Simulated Carbon/Epoxy Stanchions Using MAT58 and MAT213 in LS-DYNA

Carbon fiber-reinforced polymer (CFRP) composites have shown promise as a material for structures designed to absorb energy in crush-style impact loading. In complementing the lightweight and tailorable characteristics of CFRP structures, the benefits of impact energy absorption are particularly interesting in aerospace vehicles that require excellent crashworthiness performance. However, simulating the behavior of CFRP structures in dynamic, crushing-style impact loading is challenging because of the many damage and failure modes that are essential to capture in the model. For the present investigation, CFRP stanchions were tested using a crash sled experimental test rig. The stanchions were designed by the Composite Materials Handbook-17 (CMH-17) Crashworthiness Working Group for the purpose of comparing experimental crash sled tests to corresponding simulations of the tests. The stanchions are C-channel shaped and represent a geometry common in the interior of aerospace vehicle structures. Explicit simulations in LSDYNA were performed using a well-established composite material model (MAT58) and a next-generation material model (MAT213). Fully integrated shell elements were utilized instead of 3D solid elements to limit computation time. In all models, each of the sixteen plies were represented with individual layers of shell elements with tiebreak contact between each adjacent ply pair to simulate interlaminar fracture. Simulating the crushing of the stanchions occurred in two phases. First, the material models were calibrated using flat specimens that were manufactured with the same layup as the stanchions. While the original goal was calibration of material-related properties, meshdependent behavior was observed in simulations with either material model, and an unstructured mesh was selected to remediate undesirable mesh-dependent failure modes. Additionally, for both the MAT58 and MAT213 models, it was found that either the crush force or the failure mode could be modeled accurately, but no set of parameters could be identified to attain both results in the same model. Once satisfactory calibration was achieved, the same material parameters were applied to the stanchion crush simulations. The stanchion simulations showed that MAT213 more accurately predicted the experimentally determined crush force, and both material models predicted key aspects of the experimentally observed failure modes.

Composite Materials↗

Numerical Simulation of the 9-10 June 1972 Black Hills Storm Using CSU RAMS

Strong easterly flow of low-level moist air over the eastern slopes of the Black Hills on 9-10 June 1972 generated a storm system that produced a flash flood, devastating the area. Based on observations from this storm event, and also from the similar Big Thompson 1976 storm event, conceptual models have been developed to explain the unusually high precipitation efficiency. In this study, the Black Hills storm is simulated using the Colorado State University Regional Atmospheric Modeling System. Simulations with homogeneous and inhomogeneous initializations and different grid structures are presented. The conceptual models of storm structure proposed by previous studies are examined in light of the present simulations. Both homogeneous and inhomogeneous initialization results capture the intense nature of the storm, but the inhomogeneous simulation produced a precipitation pattern closer to the observed pattern. The simulations point to stationary tilted updrafts, with precipitation falling out to the rear as the preferred storm structure. Experiments with different grid structures point to the importance of removing the lateral boundaries far from the region of activity. Overall, simulation performance in capturing the observed behavior of the storm system was enhanced by use of inhomogeneous initialization.

Nair, U. S.↗

Simulation of radar reflectivity and surface measurements of rainfall

Raindrop size distributions (RSDs) are often estimated using surface raindrop sampling devices (e.g., disdrometers) or optical array (2D-PMS) probes. A number of authors have used these measured distributions to compute certain higher-order RSD moments that correspond to radar reflectivity, attenuation, optical extinction, etc. Scatter plots of these RSD moments versus disdrometer-measured rainrates are then used to deduce physical relationships between radar reflectivity, attenuation, etc., which are measured by independent instruments (e.g., radar), and rainrate. In this paper RSDs of the gamma form as well as radar reflectivity (via time series simulation) are simulated to study the correlation structure of radar estimates versus rainrate as opposed to RSD moment estimates versus rainrate. The parameters N0, D0 and m of a gamma distribution are varied over the range normally found in rainfall, as well as varying the device sampling volume. The simulations are used to explain some possible features related to discrepancies which can arise when radar rainfall measurements are compared with surface or aircraft-based sampling devices.

Chandrasekar, V.↗

Damping and structural control of the JPL phase 0 testbed structure

This paper describes recent advances in structural quieting technology as applied to active truss structures intended for high precision space based optics applications. The active structure incorporates piezoelectric active members which exert control forces internal to the structure and thereby improve the structure's dimensional stability. The control architecture involves two layers of feedback control. The first utilizes collocated measurements of force and velocity at the active member to achieve active damping, the second utilizes noncollocated measurements of acceleration at the location of a simulated optical component to achieve structural stabilization. The local control loops are based on the concept of impedance matching, the global control loops are designed using robust control methods. These two levels of control are intended to operate simultaneously; however, in this paper each approach is applied individually. The combined implementation is left for future work.

Fanson, James L.↗

Coupled numerical simulation of the external and engine inlet flows for the F-18 at large incidence

This paper presents a numerical simulation of the external and engine inlet flows for the F-18 aircraft at typical high-angle-of-attack flight conditions. Two engine inlet mass flow rates, corresponding to flight idle and maximum power, were computed. This was accomplished using a structured, overset grid technique to couple the external and internal grid systems. Reynolds-averaged Navier-Stokes solutions were obtained using an implicit, finite-differencing scheme. Results show a strong coupling of the external and engine inlet flows, especially at the maximum power setting. Increasing the mass flow rate through the inlet caused the primary vortex breakdown location to move downstream. This trend is also observed in flight tests performed on the F-18. A reversed flow region upstream of the inlet duct is visible in the faired-inlet and flight-idle computations. This flow reversal is not present in the maximum power setting computation. These large-scale changes in flow structure highlight the importance of simulating inlet conditions in high-angle-of-attack aircraft computations.

Murman, Scott M.↗