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At least 1,117 records · Page 62

Analyzing inference workloads for spatiotemporal modeling

Ensuring power grid resiliency, forecasting climate conditions, and optimization of transportation infrastructure are some of the many application areas where data is collected in both space and time. Spatiotemporal modeling is about modeling those patterns for forecasting future trends and carrying out critical decision-making by leveraging machine learning/deep learning. Once trained offline, field deployment of trained models for near real-time inference could be challenging because performance can vary significantly depending on the environment, available compute resources and tolerance to ambiguity in results. Users deploying spatiotemporal models for solving complex problems can benefit from analytical studies considering a plethora of system adaptations to understand the associated performance-quality trade-offs. To facilitate the co-design of next-generation hardware architectures for field deployment of trained models, it is critical to characterize the workloads of these deep learning (DL) applications during inference and assess their computational patterns at different levels of the execution stack. In this paper, we develop several variants of deep learning applications that use spatiotemporal data from dynamical systems. We study the associated computational patterns for inference workloads at different levels, considering relevant models (Long short-term Memory, Convolutional Neural Network and Spatio-Temporal Graph Convolution Network), DL frameworks (Tensorflow and PyTorch), precision (FP16, FP32, AMP, INT16 and INT8), inference runtime (ONNX and AI Template), post-training quantization (TensorRT) and platforms (Nvidia DGX A100 and Sambanova SN10 RDU). Overall, our findings indicate that although there is potential in mixed-precision models and post-training quantization for spatiotemporal modeling, extracting efficiency from contemporary GPU systems might be challenging. Instead, co-designing custom accelerators by leveraging optimized High Level Synthesis frameworks (such as SODA High-Level Synthesizer for customized FPGA/ASIC targets) can make workload-specific adjustments to enhance the efficiency.

97 MATHEMATICS AND COMPUTING↗

Accelerating solidification process simulation for large-sized system of liquid metal atoms using GPU with CUDA

Molecular dynamics simulation is a powerful tool to simulate and analyze complex physical processes and phenomena at atomic characteristic for predicting the natural time-evolution of a system of atoms. Precise simulation of physical processes has strong requirements both in the simulation size and computing timescale. Therefore, finding available computing resources is crucial to accelerate computation. However, a tremendous computational resource (GPGPU) are recently being utilized for general purpose computing due to its high performance of floating-point arithmetic operation, wide memory bandwidth and enhanced programmability. As for the most time-consuming component in MD simulation calculation during the case of studying liquid metal solidification processes, this paper presents a fine-grained spatial decomposition method to accelerate the computation of update of neighbor lists and interaction force calculation by take advantage of modern graphics processors units (GPU), enlarging the scale of the simulation system to a simulation system involving 10 000 000 atoms. In addition, a number of evaluations and tests, ranging from executions on different precision enabled-CUDA versions, over various types of GPU (NVIDIA 480GTX, 580GTX and M2050) to CPU clusters with different number of CPU cores are discussed. The experimental results demonstrate that GPU-based calculations are typically 9∼11 times faster than the corresponding sequential execution and approximately 1.5∼2 times faster than 16 CPU cores clusters implementations. On the basis of the simulated results, the comparisons between the theoretical results and the experimental ones are executed, and the good agreement between the two and more complete and larger cluster structures in the actual macroscopic materials are observed. Moreover, different nucleation and evolution mechanism of nano-clusters and nano-crystals formed in the processes of metal solidification is observed with large-sized system.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Technoeconomic analysis of perovskite/silicon tandem solar modules

Tandem photovoltaic (PV) modules offer an opportunity to improve the efficiency and energy yield of available solar resources compared with single-junction devices. Here, we present a cost model and sensitivity analysis of perovskite/silicon (Si) tandem modules to understand how design choices impact overall module costs. We find a minimum sustainable price (MSP) of $\$$0.428/W DC for our baseline two-terminal design and $\$$0.423/W DC for our baseline four-terminal design, each at a module efficiency of 25% and module production of 3 GW per year in the United States. We find that the choice of Si cell architecture, overall module efficiency, and factory throughput have the most significant impacts on cost and competitiveness. The dynamic model provided is designed for researchers, companies, and interested individuals to use and edit as needed to better understand the trade-offs among PV module technologies and enable targeted research to improve module design and fabrication.

14 SOLAR ENERGY↗

DLHub: Simplifying publication, discovery, and use of machine learning models in science

Machine Learning (ML) has become a critical tool enabling new methods of analysis and driving deeper understanding of phenomena across scientific disciplines. There is a growing need for "learning systems" to support various phases in the ML lifecycle. While others have focused on supporting model development, training, and inference, few have focused on the unique challenges inherent in science, such as the need to publish and share models and to serve them on a range of available computing resources. In this paper, we present the Data and Learning Hub for science (DLHub), a learning system designed to support these use cases. Specifically, DLHub enables publication of models, with descriptive metadata, persistent identifiers, and flexible access control. It packages arbitrary models into portable servable containers, and enables low-latency, distributed serving of these models on heterogeneous compute resources. In this work, we show that DLHub supports low-latency model inference comparable to other model serving systems including TensorFlow Serving, SageMaker, and Clipper, and improved performance, by up to 95%, with batching and memoization enabled. We also show that DLHub can scale to concurrently serve models on 500 containers. Finally, we describe five case studies that highlight the use of DLHub for scientific applications.

97 MATHEMATICS AND COMPUTING↗

Multi-fidelity physics-informed machine learning for probabilistic damage diagnosis

Machine learning (ML) models are gaining popularity in structural health monitoring (SHM) because of their ability to learn the complex relationship between damage and sensor data. However, the lack of sufficient experimental data for structures with different degrees of damage is a key problem in training ML models for SHM. This problem can be alleviated by using physics-based models to generate the required training data to build physics-informed ML (PIML) models for SHM. However, it takes significant computational effort to perform enough high-fidelity simulations of the diagnostic test. It is thus desirable to know whether the available computational resource budget should be expended on numerous low-fidelity physics simulations, or a small number of high-fidelity simulations, or their combination. In this paper, we investigate this aspect of generating adequate training data for PIML, by constructing multi-fidelity PIML models. We evaluate the performance of several PIML models, trained with different amounts of low-fidelity and high-fidelity data, in locating hidden cracks in concrete structures using a nonlinear dynamics-based diagnosis technique. Here, we find that high-fidelity physics simulations that do not cover the (test and damage) parameter space do not improve the performance of diagnostic PIML models built using data from many low-fidelity physics simulations.

42 ENGINEERING↗

Efficient prediction of concentrating solar power plant productivity using data clustering

Concentrating solar power (CSP) plants convert solar energy to electricity and can be deployed with a thermal storage capability to shift electricity generation from time periods with available solar resource to those with high electricity demand or electricity price. Rigorous optimization of plant design and operational strategies can improve the market-competitiveness and commercial viability; however, such optimization may require hundreds of annual performance simulations, each of which can be computationally expensive when including considerations such as optimization of dispatch scheduling, sub-hourly time resolution, and stochastic effects due to uncertain weather or electricity price forecasts. This paper proposes a methodology to reduce the computational burden associated with simulation of electricity yield and revenue for CSP plants over a single- or multi-year period. Data-clustering techniques are employed to select a small number of limited-duration time blocks for simulation that, when appropriately weighted, can reproduce generation and revenue over a single year or within each year of a multi-year period. After selection of appropriate data features and weighting factors defining similarity between time-series profiles, the methodology captured annual revenue within 2.3%, 1.7%, or 1.2% using simulation of 10, 30, or 50 three-day exemplar time blocks, respectively, for each of three single-year location/weather/market scenarios and five plant configurations ranging from low to high solar multiple and storage capacity. When applied to multi-year datasets, the proposed methodology can capture inter-year variability that is unavailable from typical meteorological year (TMY) datasets while simultaneously requiring simulation of less than a single year of data.

14 SOLAR ENERGY↗

Perovskite Photovoltaics: The Path to a Printable Terawatt-Scale Technology

Abundant, low-cost, reliable, and clean energy is critical not just to maintain but also to improve the living conditions across the globe. Because of the world's unrelenting population and GDP growth that is only slightly offset by reductions in energy intensity per $ of GDP, it has been estimated that by 2050 the world will consume an average of 30 Terawatts (TW) of total (i.e., not just electricity) energy, of which, assuming no current generation capacity retires, at least between 10-15 TW will be completely new capacity. Addressing this 'Terawatt challenge', a term originally coined by Richard Smalley in 2004, in a nonpolluting and sustainable way is integral to addressing socioeconomic needs in both industrial and rapidly developing countries worldwide. In conjunction with ongoing electrification of the energy system, the vastness of the available solar resource will provide a solution to the world's energy needs if we can develop sufficiently low-cost, high-performance, and massively scalable photovoltaic (PV) technology.

14 SOLAR ENERGY↗

RCSB Protein Data Bank tools for 3D structure-guided cancer research: human papillomavirus (HPV) case study

Abstract Atomic-level three-dimensional (3D) structure data for biological macromolecules often prove critical to dissecting and understanding the precise mechanisms of action of cancer-related proteins and their diverse roles in oncogenic transformation, proliferation, and metastasis. They are also used extensively to identify potentially druggable targets and facilitate discovery and development of both small-molecule and biologic drugs that are today benefiting individuals diagnosed with cancer around the world. 3D structures of biomolecules (including proteins, DNA, RNA, and their complexes with one another, drugs, and other small molecules) are freely distributed by the open-access Protein Data Bank (PDB). This global data repository is used by millions of scientists and educators working in the areas of drug discovery, vaccine design, and biomedical and biotechnology research. The US Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB) provides an integrated portal to the PDB archive that streamlines access for millions of worldwide PDB data consumers worldwide. Herein, we review online resources made available free of charge by the RCSB PDB to basic and applied researchers, healthcare providers, educators and their students, patients and their families, and the curious public. We exemplify the value of understanding cancer-related proteins in 3D with a case study focused on human papillomavirus.

60 APPLIED LIFE SCIENCES↗

Sustainability pathways for perovskite photovoltaics

Solar energy is the fastest-growing source of electricity generation globally. As deployment increases, photovoltaic (PV) panels need to be produced sustainably. Therefore, the resource utilization rate and the rate at which those resources become available in the environment must be in equilibrium while maintaining the well-being of people and nature. Metal halide perovskite (MHP) semiconductors could revolutionize PV technology due to high efficiency, readily available/accessible materials and low-cost production. Here we outline how MHP-PV panels could scale a sustainable supply chain while appreciably contributing to a global renewable energy transition. Further, we evaluate the critical material concerns, embodied energy, carbon impacts and circular supply chain processes of MHP-PVs. The research community is in an influential position to prioritize research efforts in reliability, recycling and remanufacturing to make MHP-PVs one of the most sustainable energy sources on the market.

14 SOLAR ENERGY↗

BLINK enables ultrafast tandem mass spectrometry cosine similarity scoring

Metabolomics has a long history of using cosine similarity to match experimental tandem mass spectra to databases for compound identification. Here we introduce the Blur-and-Link (BLINK) approach for scoring cosine similarity. By bypassing fragment alignment and simultaneously scoring all pairs of spectra using sparse matrix operations, BLINK is over 3000 times faster than MatchMS, a widely used loop-based alignment and scoring implementation. Using a similarity cutoff of 0.7, BLINK and MatchMS had practically equivalent identification agreement, and greater than 99% of their scores and matching ion counts were identical. This performance improvement can enable calculations to be performed that would typically be limited by time and available computational resources.

47 OTHER INSTRUMENTATION↗

Machine-learning-based dynamic-importance sampling for adaptive multiscale simulations

Multiscale simulations are a well-accepted way to bridge the length and time scales required for scientific studies with the solution accuracy achievable through available computational resources. Traditional approaches either solve a coarse model with selective refinement or coerce a detailed model into faster sampling, both of which have limitations. Here, we present a paradigm of adaptive, multiscale simulations that couple different scales using a dynamic-importance sampling approach. Our method uses machine learning to dynamically and exhaustively sample the phase space explored by a macro model using microscale simulations and enables an automatic feedback from the micro to the macro scale, leading to a self-healing multiscale simulation. As a result, our approach delivers macro length and time scales, but with the effective precision of the micro scale. Our approach is arbitrarily scalable as well as transferable to many different types of simulations. Overall, our method made possible a multiscale scientific campaign of unprecedented scale to understand the interactions of RAS proteins with a plasma membrane in the context of cancer research running over several days on Sierra, which is currently the second-most-powerful supercomputer in the world.

59 BASIC BIOLOGICAL SCIENCES↗

Accelerating Science Impact through Big Data Workflow Management and Supercomputing

The Large Hadron Collider (LHC), operating at the international CERN Laboratory in Geneva, Switzerland, is leading Big Data driven scientific explorations. ATLAS, one of the largest collaborations ever assembled in the the history of science, is at the forefront of research at the LHC. To address an unprecedented multi-petabyte data processing challenge, the ATLAS experiment is relying on a heterogeneous distributed computational infrastructure. To manage the workflow for all data processing on hundreds of data centers the PanDA (Production and Distributed Analysis)Workload Management System is used. An ambitious program to expand PanDA to all available computing resources, including opportunistic use of commercial and academic clouds and Leadership Computing Facilities (LCF), is realizing within BigPanDA and megaPanDA projects. These projects are now exploring how PanDA might be used for managing computing jobs that run on supercomputers including OLCF’s Titan and NRC-KI HPC2. The main idea is to reuse, as much as possible, existing components of the PanDA system that are already deployed on the LHC Grid for analysis of physics data. The next generation of PanDA will allow many data-intensive sciences employing a variety of computing platforms to benefit from ATLAS experience and proven tools in highly scalable processing.

97 MATHEMATICS AND COMPUTING↗

GPU-friendly surface model for Monte-Carlo detector simulations

The demands for Monte-Carlo simulation are drastically increasing with the Large Hadron Collider’s high-luminosity upgrade, and are expected to exceed the currently available compute resources. At the same time, modern high-performance computing has adopted powerful hardware accelerators, particularly GPUs. The AdePT and Celeritas projects aim to address the demanding computational needs by leveraging these heterogeneous computing architectures. While both have successfully ported realistic detector simulations to GPUs using the VecGeom library, the complexity of geometry modeling emerged as a bottleneck. Thread divergence and high register usage were degrading the GPU performance. Therefore, a new, GPU-friendly surface-based model has been introduced in the VecGeom library that decomposes the divergent code of the 3D primitive solids into simpler and more balanced surface algorithms. In this work, we present the latest developments, focusing on the additions required to efficiently model complex setups like the CMS Phase-2 geometry. This includes memory reduction techniques, and adding accelerating structures for faster traversal.

Diederichs, Severin [CERN]↗

Particle-in-cell modeling for MJ scale dense plasma focus with varied anode shape

Megajoule scale dense plasma focus (DPF) Z-pinches with deuterium gas fill are compact devices capable of producing 10{sup 12} neutrons per shot but past predictive models of large-scale DPF have not included kinetic effects such as ion beam formation or anomalous resistivity. We report on progress of developing a predictive DPF model by extending our 2D axisymmetric collisional kinetic particle-in-cell (PIC) simulations from the 4 kJ, 200 kA LLNL DPF to 1 MJ, 2 MA Gemini DPF using the PIC code LSP. These new simulations incorporate electrodes, an external pulsed-power driver circuit, and model the plasma from insulator lift-off through the pinch phase. To accommodate the vast range of relevant spatial and temporal scales involved in the Gemini DPF within the available computational resources, the simulations were performed using a new hybrid fluid-to-kinetic model. This new approach allows single simulations to begin in an electron/ion fluid mode from insulator lift-off through the 5-6 μs run-down of the 50+ cm anode, then transition to a fully kinetic PIC description during the run-in phase, when the current sheath is 2-3 mm from the central axis of the anode. Simulations are advanced through the final pinch phase using an adaptive variable time-step to capture the fs and sub-mm scales of the kinetic instabilities involved in the ion beam formation and neutron production. Validation assessments are being performed using a variety of different anode shapes, comparing against experimental measurements of neutron yield, neutron anisotropy and ion beam production.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Electronic journals: Their use by teachers/researchers of engineering and social sciences

Libraries must attend the needs of their different users. Academics are usually a particular kind of users with specific needs. Universities are environments where scientific communication is essential and where electronic format of journals is becoming more and more frequently used. This way it becomes increasingly important to understand how academics from different scientific areas use the available electronic resources. The aim of this study is to better understand the existing differences among the users of electronic journals in Engineering and Social Sciences. The research undertaken was mainly focused on the study of the use of electronic journals by teachers/researchers from the Faculties of Engineering and of Arts from the University of Porto, Portugal. In this study an international survey was used in order to characterize the levels of use and access of electronic journals by these communities. The ways of seeking and using scientific information, namely in terms frequency of access, the number of articles consulted, the use of databases and the preference of publishing in electronic journals were analyzed. A set of comparisons were established and results indicate an extensive use of the electronic format, regardless the faculty. However, some differences emerge when it comes to details. Such is the case of the usage rate of reference management software which is considerably more used by Engineering academics than Social Science ones. Generally, electronic journals meeting the information needs of its users and are increasingly used as a preferred means of research. Though, some particular differences in the use of them have emerged, when comparing academics from these two faculties.

99 GENERAL AND MISCELLANEOUS↗

Kinematic analysis of in situ measurement during chemical mechanical planarization process

Chemical mechanical planarization (CMP) is the most widely used planarization technique in semiconductor manufacturing presently. With the aid of in situ measurement technology, CMP tools can achieve good performance and stable productivity. However, the in situ measurement has remained unexplored from a kinematic standpoint. The available related resources for the kinematic analysis are very limited due to the complexity and technical secret. In this paper, a comprehensive kinematic analysis of in situ measurement is provided, including the analysis model, the measurement trajectory, and the measurement time of each zone of wafer surface during the practical CMP process. In addition, a lot of numerical calculations are performed to study the influences of main parameters on the measurement trajectory and the measurement velocity variation of the probe during the measurement process. All the efforts are expected to improve the in situ measurement system and promote the advancement in CMP control system.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

Nanofluid of graphene-based amphiphilic Janus nanosheets for tertiary or enhanced oil recovery: High performance at low concentration

Significance Improving crude oil recovery by 1% worldwide would result in a huge amount of crude oil resources becoming available. However, the economic and environmental concerns are too serious to ignore when chemical methods (surfactants or polymers flooding, etc.) are used for an average 10–20% enhancement for tertiary oil recovery. Simple nanofluid (containing only nanoparticles) flooding at low concentration (0.01 wt % or less) is a promising alternative, but the efficiency is below 5% in a saline environment (2 wt % or higher NaCl content). We report a simple nanofluid of graphene-based Janus amphiphilic nanosheets for enhanced oil recovery with efficiency of about 15.2%, comparable to chemical methods, which is both economically and environmentally beneficial to the petroleum industry.

Luo, Dan↗