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DOE OSTI2019

Final Letter Report for AEgis Technologies NMSBA Project

This letter report signals the end of the NMSBA project to help AEgis Technologies (AEGis) find a way to solve a coupled heat transfer equation for a laser-heated Silicon wafer. Accompanying this letter report is a MATLAB live script that documents the work done to date and provides a first attempt at a solution. The scope of work provided for Sandia National Laboratories (SNL) to document the problem in a general form in this phase of the work, with the goal of applying for additional funding in Calendar Year 2020 to attempt a complete solution. SNL staff analytically solved the differential heat equation and found solutions that reproduce reasonable shapes for heat flux. However, the required information to provide a complete solution is not available.

97 MATHEMATICS AND COMPUTING↗

DOE OSTI2020

SPND Sensitivity Calculations Using MCNP and Experimental Data from ACRR

The use of the Monte Carlo N-Particle Transport Code (MCNP) to calculate detector sensitivity for Self-Powered Neutron Detectors (SPNDs) in the Annular Core Research Reactor (ACRR) could be a vital tool in the effort to optimize the design of next-generation SPNDs. Next-generation SPND designs, which consider specific materials and geometry, may provide experimenters with capabilities for advanced mixed field dosimetry. These detectors will need to be optimized for configuration, materials, and geometries and the ability to model and iterate must be available in order to decide on the ideal. SPND design. SPNDs were modeled in MCNP which closely resembled the dimensions and location of actual detectors used in the ACRR. Tallies were used to calculate detector sensitivity. Using metrics from a previous report, oscilloscope data from pulses were manipulated in a Matrix Laboratory computing environment (MATLAB) script to calculate experimental detector sensitivity. This report outlines the process in which experimental data from ACRR pulses verified results from tallies in an MCNP ACRR model. The sensitivity values from experiments and MCNP calculations agreed within one standard deviation. Parametric studies were also performed with MCNP to investigate the effects of materials and dimensions of different SPNDs.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

DOE OSTI2020

Development of the PROTEUS and ANSYS Coupled System for Simulating Heat Pipe Cooled Micro Reactors

The objective of this project is to develop the coupled system of PROTEUS/ANSYS for simulating a heat pipe cooled micro reactor. As an initial effort, while figuring out controlling ANSYS Mechanical with Workbench, the coupled system of PROTEUS/FLUENT in the CORBA environment were tried to demonstrate the coupled simulation for a transient problem of a heat pipe cooled micro reactor. Finally, the coupled system of PROTEUS/ANSYS was constructed using APDL commands in the CORBA environment, instead of ANSYS Workbench, since we found that ANSYS with the current version of Workbench Python scripting did not provide capabilities necessary for simulating a transient problem.

21 SPECIFIC NUCLEAR REACTORS AND ASSOCIATED PLANTS↗

DOE OSTI2020

BEE - FY20 P6-3: Release BEEWorkflowManager, BEETaskManager, and client application 2.3.6.01 – LANL ATDM ST / STNS01-4 P6 Milestone Completion Documentation

Release BEEWorkflowManager, BEETaskManager, and client software. The BEEWorkflowManager daemon runs on the HPC cluster login node. It accepts workflows submitted by the BEE client. These workflows are specified using the Common Workflow Language (CWL) standard. The BEEWorkflowManager loads workflows into the Neo4j graph database to create the workflow directed acyclic graph (DAG), and submits the workflow tasks to the BEETaskManager for execution. The BEEWorkflowManager records the state of the workflow and its tasks, and communicates this state to the BEE client. The BEEWorkflowManager will start, pause, and cancel a running workflow and its tasks at the command of the BEE client. The BEETaskManager daemon runs on the HPC cluster login node. It accepts tasks from the BEEWorkflowManager, turns those tasks into HPC resource manager jobs (e.g. a slurm job script), and submits the job to the cluster resource manager. The BEETaskManager then tracks the status of the job (pending, running, complete) and updates the BEEWorkflowManager. The BEETaskManager will also cancel a queued or running job when commanded to do so by the BEEWorkflowManager. The first release of the BEETaskManager will support the Slurm resource manager and the Charliecloud linux container runtime.

97 MATHEMATICS AND COMPUTING↗

DOE OSTI2020

Hanford Site-wide Natural Recharge Boundary Condition for Groundwater Models

The purpose of this environmental calculation file (ECF) is to document the development of a tool that generates temporally and spatially variable representations of natural recharge for the Hanford Site. A key feature of the recharge evolution tool (RET) is that it applies sanctioned natural recharge rates varying as a function of the condition/cover of the ground surface and soil type at different points in time. No hydrologic calculations are performed by the RET, this script works as a lookup database between spatial and temporal datasets to assign research-based recharge rates to corresponding regions throughout the Hanford Site. This work will support vadose zone and groundwater models for the Hanford Site. Although efforts will focus on generating recharge estimates for the entirety of the Hanford Site, the focus scope of this work will be the Central Plateau Area to support the Composite Analysis Vadose Zone facet. In other words, the reliability of this calculation will be greatest within the Central Plateau Area and decrease with departures from that geographic region.

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗

DOE OSTI2020

Hanford Site-wide Natural Recharge Boundary Condition for Groundwater Models

The purpose of this environmental calculation file (ECF) is to document the development of a tool that generates temporally and spatially variable representations of natural recharge for the Hanford Site. A key feature of the recharge evolution tool (RET) is that it applies sanctioned natural re-charge rates varying as a function of the condition/cover of the ground surface and soil type at different points in time. No hydrologic calculations are performed by the RET, this script works as a lookup data base between spatial and temporal datasets to assign research-based recharge rates to corresponding regions throughout the Hanford Site. This work will support vadose zone and groundwater models for the Hanford Site. Although efforts will focus on generating recharge estimates for the entirety of the Hanford Site, the focus scope of this work will be the Central Plateau Area to support the Composite Analysis Vadose Zone facet. In other words, the reliability of this calculation will be greatest within the Central Plateau Area and decrease with departures from that geographic region.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2020

CyDER: A Cyber Physical Co-simulation Platform for Distributed Energy Resources in Smartgrids

The CyDER project aimed at developing an open-source, modular and scalable co-simulation platform for power grids with large shares of Distributed Energy Resources (DERs). The project partners are the Lawrence Berkeley National Lab (LBNL), Lawrence Livermore National Lab (LLNL), PG&E, SolarCity, and ChargePoint. The prime recipient is LBNL; SolarCity and ChargePoint were partners for the project’s first two years. Increased DER integration introduces a number of challenges in power grid operation including a more dynamic interaction between the transmission grid and distribution grids, and increased modeling complexity. Although specialized software exists to precisely model different components of the power system, it is far from trivial to integrate all various models and perform a holistic simulation. Instead of replicating all models in a common simulation program, a commonly accepted approach to tackle this model diversity is to couple third-party simulators and models through a co-simulation platform that coordinates information exchange among the various components. Following this line of research, this project’s objective was to develop a co-simulation platform based on a widely accepted industrial standard called Functional Mockup Interface (FMI). Within this process, the project developed models compliant with the FMI standard, called Functional Mockup Units (FMUs), and used them to perform various operational and planning power system analyses. Relying and building upon an industrial standard is the main differentiation of this project compared with previous or parallel efforts in the co-simulation area. Particular emphasis was put on delivering software utilities to facilitate setting up and running co-simulations by end-users. Furthermore, a strong aspect of this project is demonstrating that co-simulation techniques can be used to perform Hardware-in-the-Loop (HIL) simulations that couple software components (e.g., simulated models) with hardware components (e.g., real devices such PV systems and batteries). The long-term goal of CyDER project is to help establish FMI as a powerful standard for co-simulation and promote adoption by electric utilities and other interested stakeholders. The main accomplishments of the project include the development of several FMUs including distribution and transmission grid models, PV inverters with Volt/Var/Watt controllers, batteries, and predictive optimal controllers. Additionally, a unique software package was developed, called SimulatorToFMU, which is capable of exporting any Python-driven simulator or Python script as an FMU. This is an important contribution towards establishing FMI as one of the main co-simulation standards, because more and more third-party programs for sub-system modeling and simulation are delivered with Python APIs. The CyDER platform was used to perform PV hosting capacity analyses in real utility feeders with and without smart inverter controls, battery storage, and EV charging. Smart inverter controls include conventional Volt/Var/Watt controls for reactive power support and active power curtailment, but also predictive controls that optimize the charging and discharging profile of the battery connected on the DC side in order to minimize the customer’s economic benefit. Finally, an important result of this project is delivering an experimental setup that consists of residential-scale PV inverters with battery storage, a real-time grid simulator with an ideal voltage source as grid emulator, and micro Phasor Measurement Units (PMUs). All these components and additional software modules are coupled to one another using the FMI standard and can be co-simulated with the CyDER platform.

24 POWER TRANSMISSION AND DISTRIBUTION↗

DOE OSTI2020

FLOP for FLAG Output Plotting

The Los Alamos hydrodynamics code, FLAG, is capable of dumping many types of output for many different variables in an array of formats. While some outputs are best viewed in a multidimensional engineering analysis visualization software, others are best viewed as 1-D “this versus that” curves. During development of a FLAG model, it is frequently required to quickly assess a model’s performance by reviewing such curves, and doing so may involve writing scripts repeatedly, adapting them each time to a specific model’s parameters. This report describes an application developed specifically to improve user efficiency in reviewing 1-D curve dumps from FLAG.

42 ENGINEERING↗

DOE OSTI2020

Platform for efficient large-scale storage and analysis of multi-omics data in plant and microbial systems (Final Technical Report)

Genomic variation at the sequence level fundamentally affects the phenotypic state of all organisms at all stages of development, while dynamic processes such as changes in the epigenome (e.g. DNA methylation state) and transcriptome regulate the specific phenotype expressed at any given state of development based upon that genomic variation. In plants, DNA methylation is a particularly important mechanism for both regulating transcriptomic expression and for management of genomic variations that could be deleterious to the organism due to the presence of active retrotransposons in plant genomes. While DNA methylation is heritable, it is also dynamic through a given plant’s development and life cycle, particularly during the development from seed to mature specimen suggesting variations in DNA methylation could be critical regulators of biologically and commercially important phenotypes such as time to flowering; in addition, plant DNA methylation is more complex than that of animals, with methylation of CHG and CHH trinucleotides evident in addition to the better-known CG methylation. The complexity of plant DNA methylation and its interplay with genomic sequence variation, transcriptomics and other epigenomic factors demand a storage and analysis framework that can cope with the complexity both within a single specimen and with analyses that span many individuals and even many species, such as attempts to extend models from model organisms to commercially relevant species. In addition to complexity, the rapid development and proliferation of sequencing technology has led to an explosion of data volume that conventional storage and analysis solutions will likely be unable to cope with in the long run. We proposed to study these with suitable distributed storage and computation and therefore for the application of cloud computing to biological analyses; integrate with existing data sources and compatible with virtually any interface use case, from fully automated shell scripts to notebooks and do all these at scale in this STTR grant.

60 APPLIED LIFE SCIENCES↗

DOE OSTI2020

Imagery Applications for Advanced Event Analytics (WBS 24.3.1.3.3-IDC FY202 Final Project Report)

Accurate event locations and replicability of location analyses are essential for assessing the nature of an event, its context, ambient site conditions, and proximity to relevant facilities and infrastructure. Additionally, accurate event locations provide valuable information that reduce uncertainties, improve confidence in event analyses, and inform in-field verification activities. However, event location/relocation and replicability are difficult due to a number of factors, including spatially-sparse network coverage in some areas of the globe and variability in seismic data processing. This team proposed that the incorporation of high-fidelity imagery as a data backbone to the analytical assessment of a suspected underground explosion and/or an advanced seismic event bulletin produced by the International Data Centre (IDC) of the Preparatory Commission for the Comprehensive Nuclear-Test-Ban Treaty Organization (CTBTO PrepCom) could reduce uncertainties and improve confidence in analyses. Specifically, temporally-separated images can reduce uncertainty by identifying areas where change has occurred (e.g., building construction or demolition, road or facilities improvements). The primary goal of this project was to develop an automated geospatial processing script for imagery change detection to better reflect needs of the technical community (including the IDC) and to make the use of such a tool accessible in a variety of settings across platforms. Technical experts at Los Alamos National Laboratory successfully built GAIA: the Geospatial Automated Imagery Analysis tool, to fill this need. GAIA combines five tool components to produce orthorectified time separated imagery and imagery change detection maps. Our toolkit (1) reduces error by providing a standardized workflow for image analyses and (2) significantly reduces processing time from between 7 and 24+ hours to approximately 5 minutes. Technical experts at Sandia National Laboratories supported GAIA via beta-testing and by introducing a web-based system approach for increased applicability. To test the function, performance, broad application, and ease-of-use of GAIA, we applied it to four separate test cases. The results of this preliminary investigation show promise in reducing uncertainty in seismic event locations: if satellite imagery can show regions where operations that produce seismic activity likely occurred, then pursuing imagery to locate epicenters of seismic nuclear events could reduce the time needed to find the true epicenter location.

58 GEOSCIENCES↗

DOE OSTI2020

Building Interfaces with Echo Using R

The following report details the functionality that was developed to directly query the MongoDB and read in echo records from within R, and the ability to create a cinema database directly from echo records. Both of these efforts used the data collected under the MINOS project for development. The nuclear facility under consideration is the High-Flux Isotope Reactor (HFIR) and co-located Radiochemical Engineering Development Center (REDC) at Oak Ridge National Laboratory in Oak Ridge, TN. HFIR is an 85 MW research reactor and is used primarily for production of a medical radioisotopes, material irradiation experiments, neutron activation, and neutron scattering. Targets for the reactor are fabricated and processed and dissolved at REDC, in addition to other glove-box and hot-cell type activities. An overhead view of the facility is provided. The rest of the report is organized as follows: Section 2 describes how to query the MongoDB and load in echo records from within R, with background information on the database type, MongoDB, and the file format of echo records, hdf5, as well as lessons learned during the development phase. Section 3 details the functionality and usage of creating a cinema database directly from echo records within R. A series of appendixes display all the R code (Section 5), some example scripts where the code is used (Section 6), and useful links for further exploration (Section 7).

21 SPECIFIC NUCLEAR REACTORS AND ASSOCIATED PLANTS↗

DOE OSTI2020

Imagery Applications for Advanced Event Analytics (WBS 24.3.1.3.3-IDC FY2020 Final Project Report)

Accurate event locations and replicability of location analyses are essential for assessing the nature of an event, its context, ambient site conditions, and proximity to relevant facilities and infrastructure. Additionally, accurate event locations provide valuable information that reduce uncertainties, improve confidence in event analyses, and inform in-field verification activities. However, event location/relocation and replicability are difficult due to a number of factors, including spatially-sparse network coverage in some areas of the globe and variability in seismic data processing. This team proposed that the incorporation of high-fidelity imagery as a data backbone to the analytical assessment of a suspected underground explosion and/or an advanced seismic event bulletin produced by the International Data Centre (IDC) of the Preparatory Commission for the Comprehensive Nuclear-Test-Ban Treaty Organization (CTBTO PrepCom) could reduce uncertainties and improve confidence in analyses. Specifically, temporally-separated images can reduce uncertainty by identifying areas where change has occurred (e.g., building construction or demolition, road or facilities improvements). The primary goal of this project was to develop an automated geospatial processing script for imagery change detection to better reflect needs of the technical community (including the IDC) and to make the use of such a tool accessible in a variety of settings across platforms. Technical experts at Los Alamos National Laboratory successfully built GAIA: the Geospatial Automated Imagery Analysis tool, to fill this need. GAIA combines five tool components to produce orthorectified time-separated imagery and imagery change detection maps. Our toolkit (1) reduces error by providing a standardized workflow for image analyses and (2) significantly reduces processing time from between 7 and 24+ hours to approximately 5 minutes. Technical experts at Sandia National Laboratories supported GAIA via beta-testing and by introducing a web-based system approach for increased applicability. To test the function, performance, broad application, and ease-of-use of GAIA, we applied it to four separate test cases. The results of this preliminary investigation show promise in reducing uncertainty in seismic event locations: if satellite imagery can show regions where operations that produce seismic activity likely occurred, then pursuing imagery to locate epicenters of seismic nuclear events could reduce the time needed to find the true epicenter location.

58 GEOSCIENCES↗

DOE OSTI2020

Hanford Site-wide Natural Recharge Boundary Condition for Groundwater Models

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗

DOE OSTI2020

Total Cost of Vehicle Ownership - Development of Analysis Webtool and Visualization

This report has been created to give an in-depth walkthrough of the functionality of the Total Cost of Operation webtool. The webtool was created to give users the ability to calculate the total cost of owning a vehicle over from the year they bought the vehicle to the end of the vehicles lifetime. This tool was developed using a combination of front-end and back-end technologies. To create the front-end HTML, CSS, and JavaScript were utilized. On the backend PHP is used as a scripting language with a database powered by MySQL. Through a combination of these technologies, a fully featured well developed webtool was created allowing users to view a cost breakdown of vehicle ownership over the lifetime of that vehicle.

29 ENERGY PLANNING, POLICY, AND ECONOMY↗

DOE OSTI2019

Multigroup Neutron Cross Section Generation for the SCEPTRE Code

Multigroup neutron cross sections were generated for the deterministic radiation transport code SCEPTRE. ENDF/B-VII.1 nuclear data files were downloaded from Los Alamos National Laboratory (LANL), processed with the LANL cross-section preparation code NJOY-2012, and post-processed to produce a SCEPTRE-formatted cross section file. A simple radiation transport problem was used to compare results calculated with MCNP, a continuous-energy radiation transport code from LANL, to results calculated with SCEPTRE using the NJOY-2012-produced multigroup cross sections. This problem was used to debug the python scripts used to post-process the NJOY-2012 output and to assess the accuracy of the multigroup cross sections. These comparisons demonstrate that the multigroup cross sections generated in this work are accurate for most elements but yielded inaccurate results for several common transition metals. This discrepancy appears to result from poor treatment of the resolved resonance region of the continuous-energy cross sections. Further work is recommended to investigate alternative methods to treat these resonances with NJOY-2012.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

DOE OSTI2021

ManiPIO - Manipulate Process I/O for Industrial Control Systems

The Manipulate Process Input/Output (IO) (ManiPIO) program allows users to develop custom scripts to execute Industrial Control System (ICS) manipulations. The driving development principles of ManiPIO are modularity and ease of use. Currently the program can utilize the Modbus TCP communication protocol, but its modular programming structure allows other protocols to be quickly and easily implemented. Additional functionality can be added to fit specific user needs, due to the usage of Python classes. The input configuration instructions are human readable and allow the user to create a complex series of control system manipulations.

97 MATHEMATICS AND COMPUTING↗

DOE OSTI2021

Concurrent Optimization of Capital Cost and Expected O&M

Concentrating solar power (CSP) technologies can utilize heat from concentrated sunlight from a field of tracking mirrors to generate electricity, reform fuel, provide process heat, or augment fossil plant heat sources. Electricity-generating power tower systems focus light from thousands of independent heliostats onto a thermal receiver, which uses the focused light to warm a heat transfer fluid (HTF), typically, a molten nitrate salt. The HTF is then sent to a power generation cycle or diverted into thermal energy storage (TES) for later use. Thermal storage is – in principle – a straightforward proposition. However, optimal utilization of a TES resource is complex and multi-faceted: thermal energy may be dispatched to produce electricity immediately upon first availability, or thermal energy may be reserved for next-day peak periods at risk of filling storage and dumping energy, or a portion of the thermal energy can be reserved to maintain equipment temperatures, reducing power cycle startup time, etc. Many possible dispatch permutations variously emphasize producing peak power, operating through transients, expediting daily startup, etc. The best operation strategy can change day-to-day throughout the year, depending on the weather and market pricing forecasts. The project we describe in this report develops a software package that allows users to explore design optimization, operations decisions, and performance characterization of concentrating solar power tower plants. Users interface with the tool through a scripting language, and results are reported in time series tables, plots, runtime logs, and design outputs. Users choose from a list of variables such as tower height, solar multiple, design-point irradiance, thermal storage size, etc., and specify information about the system using a list of parameters. The software can then optimize the specified variables to reduce the cost of energy produced by the system while meeting certain production requirements, accounting for uncertain weather and electricity price forecasts, and correcting for equipment failures or repair time. The software we develop is the first comprehensive design tool of its kind to incorporate all of these aspects while being deployed as open source.

14 SOLAR ENERGY↗

DOE OSTI2021

The iRage Cookbook [Slides]

iRage is a family of Zsh and Python 3 scripts designed to accelerate the process of submitting calculations for the novice xRage user. iRage reduces the time to write a new input deck and submit an xRage problem to the production queue to about 15 minutes, assuming the user has defined the initial geometry using a program like Osito or linked to problem geometries generated by codes such as Abaqus, Flag, or Pagosa. iRage runs on Linux and Mac systems.

97 MATHEMATICS AND COMPUTING↗