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At least 1,135 records · Page 63

Lactiplantibacillus plantarum uses ecologically relevant, exogenous quinones for extracellular electron transfer

Extracellular electron transfer (EET) is a metabolic process that frequently uses quinones to couple intracellular redox reactions with extracellular electron acceptors. The physiological relevance of this metabolism for microorganisms capable of EET but unable to synthesize their own quinones remains to be determined. To address this question, we investigated quinone utilization by Lactiplantibacillus plantarum, a microorganism required for food fermentations, that performs EET and is also a quinone auxotroph. L. plantarum selectively used 1,4-dihydroxy-2-naphthoic acid (DHNA) and more hydrophilic naphthoquinones for EET reduction of insoluble iron (ferrihydrite). However, quinones used for EET also inhibited L. plantarum growth in non-aerated conditions. Transcriptomic analysis showed that DHNA-induced oxidative stress in L. plantarum, but this was alleviated when the electron acceptor, ferric ammonium citrate (FeAC), was included in the growth medium. Although DHNA and FeAC induced L. plantarum EET, this metabolism was still dependent on direct access to environmental electron shuttles. To determine whether quinone-producing food fermentation bacteria could be sources of those electron shuttles, L. plantarum EET was measured after incubation with Lactococcus lactis and Leuconostoc mesenteroides. Quinone-producing L. lactis, but not a quinone-deficient L. lactis ΔmenC mutant, increased L. plantarum ferrihydrite reduction and medium acidification through an EET-dependent mechanism. L. plantarum EET was also stimulated by L. mesenteroides, resulting in greater environmental acidification and transient increases in L. plantarum cell numbers. Our findings show that L. plantarum overcomes the toxic effects of exogenous quinones to use those compounds for EET-conferred, ecological advantages during the early stages of food fermentations.

59 BASIC BIOLOGICAL SCIENCES↗

Electron cyclotron resonance heating by magnetic filter field in a negative hydrogen ion source

The influence of magnetic filter field on plasma properties in the heating region has been investigated in a planar-type inductively coupled radio-frequency (RF) H{sup −} ion source. Besides filtering high energy electrons near the extraction region, the magnetic filter field is clearly observed to increase the electron temperature in the heating region at low pressure discharge. With increasing the operating pressure, enhancement of electron temperature in the heating region is reduced. The possibility of electron cyclotron resonance (ECR) heating in the heating region due to stray magnetic field generated by a filter magnet located at the extraction region is examined. It is found that ECR heating by RF wave field in the discharge region, where the strength of an axial magnetic field is approximately ∼4.8 G, can effectively heat low energy electrons. Depletion of low energy electrons in the electron energy distribution function measured at the heating region supports the occurrence of ECR heating. The present study suggests that addition of axial magnetic field as small as several G by an external electromagnet or permanent magnets can greatly increase the generation of highly ro-vibrationally excited hydrogen molecules in the heating region, thus improving the performance of H{sup −} ion generation in volume-produced negative hydrogen ion sources.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

The contribution of Diamond Light Source to the study of strongly correlated electron systems and complex magnetic structures

We review some of the significant contributions to the field of strongly correlated materials and complex magnets, arising from experiments performed at the Diamond Light Source (Harwell Science and Innovation Campus, Didcot, UK) during the first few years of operation (2007–2014). We provide a comprehensive overview of Diamond research on topological insulators, multiferroics, complex oxides and magnetic nanostructures. Several experiments on ultrafast dynamics, magnetic imaging, photoemission electron microscopy, soft X-ray holography and resonant magnetic hard and soft X-ray scattering are described.

Radaelli, P. G.↗

GPAW: An open Python package for electronic structure calculations

We review the GPAW open-source Python package for electronic structure calculations. GPAW is based on the projector-augmented wave method and can solve the self-consistent density functional theory (DFT) equations using three different wave-function representations, namely real-space grids, plane waves, and numerical atomic orbitals. The three representations are complementary and mutually independent and can be connected by transformations via the real-space grid. This multi-basis feature renders GPAW highly versatile and unique among similar codes. By virtue of its modular structure, the GPAW code constitutes an ideal platform for the implementation of new features and methodologies. Moreover, it is well integrated with the Atomic Simulation Environment (ASE), providing a flexible and dynamic user interface. In addition to ground-state DFT calculations, GPAW supports many-body GW band structures, optical excitations from the Bethe–Salpeter Equation, variational calculations of excited states in molecules and solids via direct optimization, and real-time propagation of the Kohn–Sham equations within time-dependent DFT. A range of more advanced methods to describe magnetic excitations and non-collinear magnetism in solids are also now available. In addition, GPAW can calculate non-linear optical tensors of solids, charged crystal point defects, and much more. Recently, support for graphics processing unit (GPU) acceleration has been achieved with minor modifications to the GPAW code thanks to the CuPy library. We end the review with an outlook, describing some future plans for GPAW.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Ultrahigh charging of dust grains by the beam−plasma method for creating a compact neutron source

Generation of high-voltage high-current electron beams in a low-pressure (P = 0.1–1 Torr) gas discharge is studied experimentally as a function of the discharge voltage and the sort and pressure of the plasma-forming gas. The density of the plasma formed by a high-current electron beam is measured. Experiments on ultrahigh charging of targets exposed to a pulsed electron beam with an energy of up to 25 keV, an electron current density of higher than 1 A/cm{sup 2}, a pulse duration of up to 1 μs, and a repetition rate of up to 1 kHz are described. A numerical model of ultrahigh charging of dust grains exposed to a high-energy electron beam is developed. The formation of high-energy positive ions in the field of negatively charged plane and spherical targets is calculated. The calculations performed for a pulse-periodic mode demonstrate the possibility of achieving neutron yields of higher than 10{sup 6} s{sup –1} cm{sup –2} in the case of a plane target and about 10{sup 9} s{sup –1} in the case of 10{sup 3} spherical targets, each with a radius of 250 μm.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Relativistic electrons near geostationary orbit - Evidence for internal magnetospheric acceleration

The possibility of an internal magnetospheric acceleration mechanism as the source of relativistic electron fluxes in earth's outer magnetosphere is explored. Such a model includes the substorm generation of a spectrally soft electron component, with subsequent inward radial diffusion. At low L values, an outward transport of energetic electrons occurs which leads to a return of the accelerated population to the outer magnetosphere. Data obtained concurrently at geostationary orbit at three widely spaced local times during a relativistic electron event provide support for acceleration by a recirculation process.

Baker, D. N.↗

On the Onset Delays of Solar Energetic Electrons and Protons: Evidence for a Common Accelerator

The processes responsible for the acceleration of solar energetic particles (SEPs) are still not well understood, including whether SEP electrons and protons are accelerated by common or separate processes. Using a numerical particle transport model that includes both pitch-angle and perpendicular spatial diffusion, we simulate, among other quantities, the onset delay for MeV electrons and protons and compare the results to observations of SEPs from widely separated spacecraft. Such observations have previously been interpreted, in a simple scenario assuming no perpendicular diffusion, as evidence for different electron and proton sources. We show that, by assuming a common particle source together with perpendicular diffusion, we are able to simultaneously reproduce the onset delays for both electrons and protons. We argue that this points toward a common accelerator for these particles. Moreover, a relatively broad particle source is required in the model to correctly describe the observations. This is suggestive of diffusive shock acceleration occurring at large shock structures playing a significant role in the acceleration of these SEPs.

R D Strauss↗

Workshop on Biological Science Opportunities Provided by the APS Upgrade

Synchrotron-based macromolecular X-ray crystallography (MX) is the primary method for determining the structure of biological molecules including proteins, nucleic acids, complexes, and large assemblies at high resolution (e.g., 95% of all new Protein Data Bank [PDB] deposits in 2017). The Advanced Photon Source (APS), which is the largest and the most productive light source for MX, will be upgraded to a multi-bend achromat lattice (the Advanced Photon Source Upgrade — APS-U) that will deliver the ultimate diffraction-limited X-ray source with radically transformative MX capabilities. The specific advantages of the APS-U X-ray source include (1) increased brightness allowing delivery of intense beams with dimensions of 1-μm or less, resulting in a 100-fold improvement in signal-to-noise, (2) increased brightness at high energy (especially for energies of 12 keV-40 keV commonly used in MX) that can be exploited to reduce primary radiation damage, and (3) low-convergence X-ray beams that will be essential for the study of large macromolecular complexes at high resolution. A workshop on “Biological Science Opportunities Provided by the APS Upgrade” was organized at Argonne National Laboratory on August 18-20, 2018, to discuss the biological science opportunities offered by the unique new capabilities of the APS-U and how the broad structural biology community could best exploit them. The APS-U takes place in a context where advances in X-ray free-electron laser (XFEL) sources and cryo-electron microscopy (cryo-EM) have added to the constellation of techniques and propelled structural biology in new directions. Synergies exist between these different technologies and it is essential to develop enabling technologies that exploit the unique, world-leading, and synergistic characteristics of each light source to boost capabilities for producing leading-edge biological research for U.S. Department of Energy (DOE) missions in energy and environment, and National Institutes of Health (NIH) missions in human health.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

On the Cause of Two Prompt Shock-Induced Relativistic Electron Depletion Events

Dayside interplanetary (IP) shock-induced injections are known to be a source of highly relativistic electrons in Earth's outer radiation belt, and are possibly the only source of greater than 1 megaelectronvolt electrons in the inner belt. The associated electron energization process is well understood and modeled. Recently, relativistic electron depletion echoes have also been associated with IP shocks, but the processes driving the depletions are less well understood. In this study, we investigate in detail two shock induced greater than 1 megaelectronvolt electron depletion events observed by the Van Allen Probes, March 17, 2015 and May 24, 2013, and draw similarities to night-side substorm related enhancements and depletions. Both events exhibit shock induced enhancements on one of the Van Allen Probes and depletions on the other in greater than 1 megaelectronvolt channels, such observations have not previously been reported. The depletion of greater than 1 megaelectronvolt electrons during the March 17, 2015 event is associated with enhancements in 10 second - 100 second kiloelectronvolt electrons on the same spacecraft. The depletion is consistent with the effects of a lack of seed electrons at larger radial distances combined with inward motion due to asymmetric compression by the shock impact. The immediate enhancements and depletions of 75 kiloelectronvolt - 2.6 greater than 1 megaelectronvolt electrons are explained by the local phase space density radial profile. Observations of electron flux dynamics during the May 24, 2013 event can also be explained by a lack of a seed population at larger radial distances, supported by butterfly distributions observed during the event. The electron's inward radial motion can be attributed to the inward propagating impulse also associated with the greater than 1 megaelectronvolt electron enhancements observed on the complementary probe, rather than global asymmetric compression. This causal mechanism has parallels to substorm related depletions. Alternatively, evidence is provided to attribute the sudden depletions to losses due to a sudden but brief inward motion of the magnetopause.

Schiller, Quintin↗

Energy of microwave-emitting electrons and hard x-ray/microwave source model in solar flares

Based on the rate of increse of the microwave flux relative to the hard X-ray flux at various energies from the onset to the peak of a flare, the mean energy of microwave-emitting electrons is estimated for 22 flares observed simultaneously in hard X-rays and microwaves. The energy of electrons varying in proportion to the 17 GHz emission is found to concentrate below 100 keV, and the mean energy or eletrons emitting 70 keV x-rays is less than about 130 keV for thin-target and less than about 180 keV for thick-target emission models, suggesting that the 17 GHz emission derives from electrons with energy of less than a few hundred keV. The magnetic field strength in the microwave source is found to be 500-1000 G for the thick-target and 1000-2000 G for the thin-target case, and 16 of the 22 events examined can be successfully explained by the thick-target model. Of the six events which cannot be explained by the thick-target model, two events give L of less than about 300 km.

Nitta, N.↗

Role of Inelastic Electron–Phonon Scattering in Electron Transport through Ultra-Scaled Amorphous Phase Change Material Nanostructures

The electron transport through ultra-scaled amorphous phase change material (PCM) GeTe is investigated by using ab initio molecular dynamics, density functional theory, and non-equilibrium Green’s function, and the inelastic electron–phonon scattering is accounted for by using the Born approximation. It is shown that, in ultra-scaled PCM device with 6 nm channel length, < 4 % of the energy carried by the incident electrons from the source is transferred to the atomic lattice before reaching the drain, indicating that the electron transport is largely elastic. Our simulation results show that the inelastic electron–phonon scattering, which plays an important role to excite trapped electrons in bulk PCM devices, exerts very limited influence on the current density value and the shape of current–voltage curve of ultra-scaled PCM devices. The analysis reveals that the Poole–Frenkel law and the Ohm’s law, which are the governing physical mechanisms of the bulk PCM devices, cease to be valid in the ultra-scaled PCM devices.

Environmental Molecular Sciences Laboratory↗

Selective Fluorination and Separation of Metals with NF3 for Mass Spectrometry

We report recent progress on the development of a new methodology based on the generation of volatile metal fluorides through the use of nitrogen trifluoride (NF3), and the separation and measurement of these metal fluorides by electron ionization mass spectrometry. Though unreactive under ambient conditions, NF3 reacts selectively at specified temperatures with various metal-containing species to form volatile metal fluorides. Utilizing these species-dependent traits, elements of a sample may be sequentially produced and thus separated on-line. Metals were reacted inside a thermogravimetric analyzer, the gas outlet of which was directly coupled to a quadrupole mass spectrometer with an electron impact ionization source via a molecular leak valve. We present results of this project including the electron ionization mass spectrum of gaseous tellurium hexafluoride.

Fluorination↗

Design of the Lanthanum hexaboride based plasma source for the large plasma device at UCLA

The Large Plasma Device (LAPD) at UCLA (University of California, Los Angeles) produces an 18 m long, magnetized, quiescent, and uniform plasma at a high repetition rate to enable studies of fundamental plasma physics. Here, we report on a major upgrade to the LAPD plasma source that allows for more robust operation and significant expansion of achievable plasma parameters. The original plasma source made use of a heated barium oxide (BaO) coated nickel sheet as an electron emitter. This source had a number of drawbacks, including a limited range of plasma density (≲4.0 × 10 12 cm −3 ), a limited discharge duration (∼10 ms), and susceptibility to poisoning following oxygen exposure. Further, the new plasma source utilizes a 38 cm diameter lanthanum hexaboride (LaB 6 ) cathode, which has a significantly higher emissivity, allowing for a much larger discharge power density, and is robust to exposure to air. Peak plasma density of up to 3.0 × 10 13 cm −33 in helium gas has been achieved. The typical operating pressure is ∼10 −5 Torr, while dynamic pressure can be achieved through the gas-puffing technique. Discharges as long as 70 ms have been produced, enabling a variety of long-time-scale studies of processes, such as turbulent particle transport. The new source has been in continuous operation for 14 months, having survived air leaks, power outages that led to rapid temperature changes on the cathode and heater, and planned machine openings. We describe the design, construction, and initial operation of this novel new large-area LaB6 plasma source.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Bayesian Optimization of a Free-Electron Laser

The Linac Coherent Light Source X-ray free-electron laser is a complex scienti c apparatus which changes con gurations multiple times per day, necessitating fast tuning strategies to reduce setup time for successive experiments. To this end, we employ a Bayesian approach to maximizing X- ray laser pulse energy by controlling groups of quadrupole magnets. A Gaussian process model provides probabilistic predictions for the machine response with respect to control parameters, enabling a balance of exploration and exploitation in the search for the global optimum. We show that the model parameters can be learned from archived scans, and correlations between devices can be extracted from the beam transport. Furthermore, the result is a sample-e cient optimization routine, combining both historical data and knowledge of accelerator physics to signi cantly outperform existing optimizers.

47 OTHER INSTRUMENTATION↗

Implementation of Design Changes Towards a More Reliable, Hands-off Magnetron Ion Source [Slides]

As the main H- ion source for the accelerator complex, magnetron ion sources have been used at Fermilab since the 1970’s. At the offline test stand, new R&D is carried out to develop and upgrade the present magnetron-type sources of H- ions of up to 80 mA and 35 keV beam energy in the context of the Proton Improvement Plan. The aim of this plan is to provide high-power proton beams for the experiments at FNAL. In order to reduce the amount of tuning and monitoring of these ion sources, a new electronic system consisting of a current-regulated arc discharge modulator allow the ion source to run at a constant arc current for improved beam output and operation. A solenoid-type gas valve feeds H2 gas into the source precisely and independently of ambient temperature. This summary will cover several studies and design changes that have been tested and will eventually be implemented on the operational magnetron sources at Fermilab. Innovative results for this type of io n source include cathode geometries, solenoid gas valves, current controlled arc pulser, cesium boiler redesign, gas mixtures of hydrogen and nitrogen, and duty factor reduction, with the aim to improve source lifetime, stability, and reducing the amount of tuning needed. In this summary, I will highlight the advances made in ion sources at Fermilab and will outline the directions of the continuing R&D effort.

43 PARTICLE ACCELERATORS↗

Implementation of Design Changes Towards a More Reliable, Hands-off Magnetron Ion Source

As the main H- ion source for the accelerator complex, magnetron ion sources have been used at Fermilab since the 1970’s. At the offline test stand, new R&D is carried out to develop and upgrade the present magnetron-type sources of H- ions of up to 80 mA and 35 keV beam energy in the context of the Proton Improvement Plan. The aim of this plan is to provide high-power proton beams for the experiments at FNAL. In order to reduce the amount of tuning and monitoring of these ion sources, a new electronic system consisting of a current-regulated arc discharge modulator allow the ion source to run at a constant arc current for improved beam output and operation. A solenoid-type gas valve feeds H2 gas into the source precisely and independently of ambient temperature. This summary will cover several studies and design changes that have been tested and will eventually be implemented on the operational magnetron sources at Fermilab. Innovative results for this type of ion source include cathode geometries, solenoid gas valves, current controlled arc pulser, cesium boiler redesign, gas mixtures of hydrogen and nitrogen, and duty factor reduction, with the aim to improve source lifetime, stability, and reducing the amount of tuning needed. In this summary, I will highlight the advances made in ion sources at Fermilab and will outline the directions of the continuing R&D effort.

43 PARTICLE ACCELERATORS↗

Reversal ion source - A new source of negative ion beams

A new type of ion source utilizing beams of electrons and target molecules, rather than a diffuse, volume plasma, is described. The source utilizes an electrostatic electron 'mirror' which reverses trajectories in an electron beam, producing electrons at their turning point having a distribution of velocities centered at zero velocity. A gas which attaches zero-velocity electrons is introduced at this turning point. Negative ions are produced by an attachment or dissociative attachment process. For many of the thermal electron-attaching molecules the cross sections can be quite large, varying as the inverse square root of the electron energy or just the s-wave threshold law. The efficiency and current density of the ion source for production of Cl(-) through the large, thermal energy attachment process is estimated. It is argued that the source can be used for the production of negative ions through attachment resonances located at higher energies as well.

Orient, O. J.↗