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All sources NASA NTRS DOE OSTI

DOE OSTI2017

Manipulating the ABCs of self-assembly via low-χ block polymer design

Significance Molecular sequence and interactions dictate the mesoscale structure of all self-assembling soft materials. Block polymers harness this relationship to access a rich variety of nanostructured materials but typically require energetically unfavorable (high-χ) interactions between blocks. Contrary to this convention, we demonstrate that ABC triblock terpolymers featuring low-χ interactions between end blocks can self-assemble into a unique mixed morphology that subverts the demands of chain connectivity. As a consequence of block–block mixing, the characteristic length scales of these self-assembled structures exhibit an unusual trend: As the total polymer size increases, the domain spacing decreases. These developments expand the vocabulary of block polymer design and open additional avenues for manipulating the self-assembly of synthetic macromolecules.

36 MATERIALS SCIENCE↗

NASA NTRS1974

The local complex of O and B stars. I - Distribution of stars and interstellar dust

The O-B5 stars, supergiants, young clusters, and associations within 1 kpc of the sun populate two flat systems inclined to each other by 19 to 22 deg. The historical background, statistical significance, composition, spatial arrangement of the contents, and interstellar extinction in the two belts are discussed. A more or less random distribution in space and in age characterizes the O-B5 stars of the 'galactic belt', which is aligned nearly along the Milky Way. The 'Gould belt' is inclined to the Milky Way (north in Sco-Oph and south in Orion), and exhibits a projected distribution of O-B5 stars in its mean plane that resembles a 'dragonfly', with five major features defining it. A crude 'diameter' of the system is 750 to 1000 pc, and the sun's position is eccentric, lying toward Ophiuchus. The nuclear age of the system, while not unique, may be characterized as 30 m.y. from the spectral type of the broad main-sequence turnup near B2-5. Most of the O-B2 stars and youngest stellar groups near the sun belong to the Gould belt, but both belts have approximately equal space densities of B3-B5 stars and similar average values of interstellar extinction.-

Stothers, R.↗

NASA NTRS1982

Examples of sequential radar images from Washington, Arizona and Alaska

Radar image time sequences of three areas were obtained to illustrate the capability for change detection over time intervals that range from two to fourteen years. The image sequences show geomorphic changes caused by volcanic eruption at Mount St. Helens, Washington, changes that have resulted from mining activities in the Sierrita Mining District, Arizona, and differences in the Ikpikpuk River drainage area, Alaska, that are mostly dependent on imaging system characteristics. Enhancement, suppression or distortion of features on the images are related in each case to interaction between the illumination geometry of the imaging system and the characteristics of the terrane surface. The radar images are contrasted with Landsat multispectral scanner images to illustrate the importance of resolution and shadowing for feature perception.

Ford, J. P.↗

NASA NTRS1985

Interrelationships among the terrestrial planets

The spatial distribution of mass in the solar system provides invaluable clues pertaining to the condensation history of the solar nebula, to the sequence of condensation of minerals and metal alloys in different P-T Regimes in the nebula and to the time sequence in the nucleation of planetary iron cores. Massive planets (Earth & Venus) were due to the twin processes of early nucleation of iron into massive cores and late termination of accretion processes which resulted in the accretion of volatile rich materials also. This paper maintains that the accretionary features (High-lands, basins/craters) are present on all the planets and the thermally controlled tectonic styles (Rifts, fracture zones, volcanic plains, Canyons, trenches, domes, etc.) are essentially of same origin but are of different magnitude and the interactions of degassed volatiles (atmosphere together with hydrosphere) with the lithosphere are dictating and diversifying the tectonic style on the Earth.

Rao, A. S. P.↗

NASA NTRS2004

Dusty Disks, Diffuse Clouds, and Dim Suns: Galactic Science with the Infrared Spectrograph on the Spitzer Space Telescope

The Infrared Spectrograph (IRS) on the Spitzer Space Telescope has now been in routine science operations since Dec. 14,2003. The IRS Science Team has used a portion of their guaranteed time to pursue three major science themes in galactic astronomy: the evolution of protostellar disks and debris disks; the composition and evolution of diffuse matter and clouds in the interstellar medium; and the composition and structure of brown dwarfs and low-mass main-sequence stars. We report here on the results from the first five months of IRS observations in these programs. Full IRS Spectra have already been obtained for large samples of YSO/protoplanetary disks in the Taurus and TW Hya associations, and or debris disks around main-sequence stars, in which many aspects of the evolution of planetary systems can be addressed for the first time. As anticipated, the mid-infrared IRS observations of brown dwarfs have yielded important new information about their atmospheres, including the identification of NH3 and measurements of new methane features. This work is based on observations made with the Spitzer Space Telescope, which is operated by the Jet Propulsion Laboratory, California Institute of Technology under NASA contract 1407. Support for this work was provided by NASA's Office of Space Science.

Roellig, T. L.↗

NASA NTRS2010

Space Borne and Ground-Based Observations of Transient Processes Occurring Around Substorm Onset

The combined THEMIS five spacecraft in-situ and ground magnetic and visible camera arrays have advanced considerably our understanding of the causal relationship between midtail plasma flows, transient ionospheric features, and ground magnetic signatures. In particular recent work has shown a connection between equatorward moving visible ionospheric transients and substorm onset, in both white-light and 6300 nm emissions. These observations, together with THEMIS in-situ measurements of bulk flows, provides strict constraints on the sequence of events leading to substorm auroral onset.We first provide a brief summary of these observations, highlighting in particular areas where the two observations differ, and suggest reasons for the differences. Next, by combining the observed correlation of flow and Pi2 waveform with a unified model of global Pi2 generation and substorm current wedge initiation we present a self-consistent description of the dynamical processes and communicative pathways that occur just prior to and during substorm expansion onset.

Kepko, L.↗

NASA NTRS2009

Modeling of Lunar Dust Contamination Due to Plume Impingement

During the Apollo missions it became apparent that lunar dust was a significant hazard. Problems included: surface obscuration during landing sequence; abrasion damage to gouge faces and helmet visors; mechanism clogging; development of space suit pressurization leaks; loss of radiator heat rejection capabilities to the point where vulnerable equipment exceeded maximum survival temperature ratings; temporary vision and respiratory problems within the Apollo Lunar Module (LM). NASA Constellation Program features many system-level components, including the Altair Lunar Lander. Altair to endure longer periods at lunar surface conditions: Apollo LM, about three days; Altair, over seven months. Program managers interested in plume-generated dust transport onto thermal control surface radiators of the first Altair created by its own landing operations.

Woronowicz, Michael↗

DOE OSTI2026

Three pairs of fungal Trametes strains isolated from distinct geographic origins show conserved genomic features and adaptive response to plant biomass

The genomes of white-rot fungi hold extended repertoires of enzymes active on virtually all the chemical bonds that intertwine lignocellulose polymers, and several Trametes species have been identified as powerful tools for biorefinery or bioremediation. However, only few studies have addressed the intra-species polymorphism one would expect from fungal strains collected in contrasted environments. We compared the genome sequence of pairs of strains collected in different geographic areas, for each of three fungal species. Using an updated list of the predicted functions for fungal ligno- and cellulolytic enzymes (CAZymes), we observed a high conservation of the gene repertoires among the six strains. We compared the adaptative response of the fungi grown on crystalline cellulose, wheat straw, aspen or pine sawdust by transcriptomics and secretomics. The gene regulation profiles were determined by the species and the substrates, rather than the strain. The secretomes did not show marked differences in the sets of secreted CAZymes after 3 day-growth on the substrates. We identified five transcription factor genes and two sesquiterpenoid synthesis genes induced during growth on lignocellulose. Wider studies using larger sets of strains will be necessary to evaluate the genericity of our findings, and to assess the phenotype diversity one could expect from geographic diversity as compared to taxonomic diversity in Trametes fungi.

Drula, E. [French National Research Institute for ↗

DOE OSTI2024

Sequence, structure prediction, and epitope analysis of the polymorphic membrane protein family in Chlamydia trachomatis

The polymorphic membrane proteins (Pmps) are a family of autotransporters that play an important role in infection, adhesion and immunity in Chlamydia trachomatis. Here we show that the characteristic GGA(I,L,V) and FxxN tetrapeptide repeats fit into a larger repeat sequence, which correspond to the coils of a large beta-helical domain in high quality structure predictions. Analysis of the protein using structure prediction algorithms provided novel insight to the chlamydial Pmp family of proteins. While the tetrapeptide motifs themselves are predicted to play a structural role in folding and close stacking of the beta-helical backbone of the passenger domain, we found many of the interesting features of Pmps are localized to the side loops jutting out from the beta helix including protease cleavage, host cell adhesion, and B-cell epitopes; while T-cell epitopes are predominantly found in the beta-helix itself. This analysis more accurately defines the Pmp family of Chlamydia and may better inform rational vaccine design and functional studies.

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2018

Molecular basis for the lack of auto-inhibition of Plasmodium falciparum importin α

Highlights: • P. falciparum contains a single gene for importin α which lacks auto-inhibition. • Mutation of a single motif in P. falciparum importin α restores auto-inhibition. • Auto-inhibition is not crucial for viability of the parasite, unlike in yeast. • The parasite may employ unique strategies for cargo binding and release. • Lack of auto-inhibition may confer advantages to parasites for faster growth. Importin α is nuclear transport receptor that recognises nuclear localisation sequences (NLS). The protein has two domains: armadillo (ARM) repeats containing NLS-binding sites and the importin β-binding (IBB) domain. The IBB domain mimics an NLS and can bind to the ARM repeats, preventing NLS binding. This phenomenon, called auto-inhibition, is a key regulatory feature for binding and release of NLS-containing cargo by importin α and mutants that lack auto-inhibition show impaired viability in Saccharomyces cerevisiae. The genome of the human malaria parasite, Plasmodium falciparum, contains a single gene for importin α and here we show that the native protein expressed by this gene lacks auto-inhibition, suggesting that P. falciparum parasites possess unconventional mechanisms for regulation of cargo binding and release. Mutation of a single SKR motif (conserved in Plasmodium species) to KRR in P. falciparum importin α restores auto-inhibition. This is the first report of a single-celled eukaryote that has evolved with a single importin α isoform lacking auto-inhibition.

60 APPLIED LIFE SCIENCES↗

DOE OSTI2022

Dynamics and bifurcations of laminar annular swirling and non-swirling jets

This paper presents bifurcation analyses characterising the nonlinear dynamics of fully developed laminar annular jets with respect to the centrebody diameter ${ {d}}$ , Reynolds number ${ {Re}}$ , and swirl ratio ${ {S}}$ . Similar flows appear in numerous applications and feature a vibrant range of topological and dynamical characteristics associated with phenomena including shear layer separation and vortex breakdown. Our results begin by describing the non-monotonic evolution of the axisymmetric jet's steady topology under varying ${ {S}}$ . In accord with earlier reports, the jet progresses through a sequence of wake, breakdown and wall jet regimes in a qualitatively similar manner across a wide span of ${ {d}}$ and ${ {Re}}$ values. In the wake regime, the non-swirling jet bifurcates to a plane-symmetric, but not axisymmetric, steady flow pattern beyond a ${ {d}}$ -dependent critical ${ {Re}}$ value. With further increase in ${ {Re}}$ , the steady non-swirling jet destabilises subsequently via multiple distinct Hopf bifurcations. Introducing ${ {S}}>0$ to the jet also induces unsteadiness by twisting the singly azimuthally periodic ( $|m|=1$ ) asymmetric wake structure and causing it to precess periodically in time about the central axis. Intermediate swirl stabilises this unsteady dynamics and restores the jet's axisymmetry. This stabilising effect is then reversed in the breakdown regime at higher ${ {S}}$ , where a variety of different $|m|=1$ and $|m|=2$ instabilities bifurcate from the steady flow as ${ {S}}$ is increased. Several instances of hysteresis and subcritical behaviour are reported and discussed, including one that manifests precessing vortex core oscillations.

Douglas, Christopher M. (ORCID:0000000259683315)↗

DOE OSTI2016

Landscape of somatic mutations in 560 breast cancer whole-genome sequences

Here, we analysed whole-genome sequences of 560 breast cancers to advance understanding of the driver mutations conferring clonal advantage and the mutational processes generating somatic mutations. We found that 93 protein-coding cancer genes carried probable driver mutations. Some non-coding regions exhibited high mutation frequencies, but most have distinctive structural features probably causing elevated mutation rates and do not contain driver mutations. Mutational signature analysis was extended to genome rearrangements and revealed twelve base substitution and six rearrangement signatures. Three rearrangement signatures, characterized by tandem duplications or deletions, appear associated with defective homologous-recombination-based DNA repair: one with deficient BRCA1 function, another with deficient BRCA1 or BRCA2 function, the cause of the third is unknown. This analysis of all classes of somatic mutation across exons, introns and intergenic regions highlights the repertoire of cancer genes and mutational processes operating, and progresses towards a comprehensive account of the somatic genetic basis of breast cancer.

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2024

Adaptation strategies of giant viruses to low-temperature marine ecosystems

Abstract Microbes in marine ecosystems have evolved their gene content to thrive successfully in the cold. Although this process has been reasonably well studied in bacteria and selected eukaryotes, less is known about the impact of cold environments on the genomes of viruses that infect eukaryotes. Here, we analyzed cold adaptations in giant viruses (Nucleocytoviricota and Mirusviricota) from austral marine environments and compared them with their Arctic and temperate counterparts. We recovered giant virus metagenome-assembled genomes (98 Nucleocytoviricota and 12 Mirusviricota MAGs) from 61 newly sequenced metagenomes and metaviromes from sub-Antarctic Patagonian fjords and Antarctic seawater samples. When analyzing our data set alongside Antarctic and Arctic giant viruses MAGs already deposited in the Global Ocean Eukaryotic Viral database, we found that Antarctic and Arctic giant viruses predominantly inhabit sub-10°C environments, featuring a high proportion of unique phylotypes in each ecosystem. In contrast, giant viruses in Patagonian fjords were subject to broader temperature ranges and showed a lower degree of endemicity. However, despite differences in their distribution, giant viruses inhabiting low-temperature marine ecosystems evolved genomic cold-adaptation strategies that led to changes in genetic functions and amino acid frequencies that ultimately affect both gene content and protein structure. Such changes seem to be absent in their mesophilic counterparts. The uniqueness of these cold-adapted marine giant viruses may now be threatened by climate change, leading to a potential reduction in their biodiversity.

Environmental Sciences & Ecology↗

DOE OSTI2020

Description and Use of SCALE Sampler Parametric Capability for Engineering Analysis and Optimization

The Sampler sequence was introduced into the SCALE nuclear modeling and simulation suite in SCALE 6.2 to perform uncertainty quantification via random sampling of nuclear data, material number densities, and dimensions. Sampler was expanded with the introduction of a parametric capability in SCALE 6.2.2. This paper discusses input for the Sampler parametric sequence and presents two case studies of analyses performed using the sequence. These case studies include preconceptual design of a package for transporting high assay low-enriched uranium (HALEU) oxide and scoping calculations to support subcritical limit development for a future update of the ANSI/ANS-8.1 (ANS-8.1) standard. The parametric capability within Sampler provides many benefits to analysts. For instance, parametric sweeps are frequently used to identify optimum parameter values as part of safety analysis or system design, but such sweeps can require substantial engineering time or may rely on custom-written scripts or scripts such as Write One, Run Many (or WORM) developed outside of any software quality assurance program. With the parametric capabilities in Sampler, however, a large number of inputs can be generated automatically without recourse to scripting by individual analysts. The parametric capability can also be used in lieu of the CSAS5S search sequence to identify optimum parameters more simply with straightforward inputs and outputs. Sampler can also be used to calculate input parameters from engineering specifications. For example, diameters can be converted to radii, or masses can be used to calculate number densities. Overall, the Sampler parametric capability provides a robust feature within SCALE, eliminating the need for user-developed scripting.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

DOE OSTI2026

Modeling and Power-Hardware-in-the-Loop Validation of Synchronous Machine Governor

This paper introduces the development of a high-fidelity gas turbine governor model using a programmable logic controller for power-hardware-in-the-loop (PHIL) validation. The governor model is integrated with the National Renewable Energy Laboratory's (NREL) PHIL test bed, featuring a 2-MVA synchronous machine and a 2.5-MW variable-speed drive, to emulate NG-driven HRSGs and CTs under various operational scenarios. The primary objective of this research is to study the grid-connected and islanding operations of conventional generation sources, with representative startup sequences including turbine purge, ignition, speed ramp-up, synchronization, and breaker closure. Preliminary results of the generator governor model on NREL PHIL platform, particularly using the 2.5-MW dynamometer system, offered significant insights into the modeling techniques, hardware integration, scaling, and real-world simulation dynamics.

24 POWER TRANSMISSION AND DISTRIBUTION↗

DOE OSTI2022

Islands Within Islands: Bacterial Phylogenetic Structure and Consortia in Hawaiian Lava Caves and Fumaroles

Lava caves, tubes, and fumaroles in Hawai‘i present a range of volcanic, oligotrophic environments from different lava flows and host unexpectedly high levels of bacterial diversity. These features provide an opportunity to study the ecological drivers that structure bacterial community diversity and assemblies in volcanic ecosystems and compare the older, more stable environments of lava tubes, to the more variable and extreme conditions of younger, geothermally active caves and fumaroles. Using 16S rRNA amplicon-based sequencing methods, we investigated the phylogenetic distinctness and diversity and identified microbial interactions and consortia through co-occurrence networks in 70 samples from lava tubes, geothermal lava caves, and fumaroles on the island of Hawai‘i. Our data illustrate that lava caves and geothermal sites harbor unique microbial communities, with very little overlap between caves or sites. We also found that older lava tubes (500–800 yrs old) hosted greater phylogenetic diversity (Faith's PD) than sites that were either geothermally active or younger (<400 yrs old). Geothermally active sites had a greater number of interactions and complexity than lava tubes. Average phylogenetic distinctness, a measure of the phylogenetic relatedness of a community, was higher than would be expected if communities were structured at random. This suggests that bacterial communities of Hawaiian volcanic environments are phylogenetically over-dispersed and that competitive exclusion is the main driver in structuring these communities. This was supported by network analyses that found that taxa (Class level) co-occurred with more distantly related organisms than close relatives, particularly in geothermal sites. Network “hubs” (taxa of potentially higher ecological importance) were not the most abundant taxa in either geothermal sites or lava tubes and were identified as unknown families or genera of the phyla, Chloroflexi and Acidobacteria. These results highlight the need for further study on the ecological role of microbes in caves through targeted culturing methods, metagenomics, and long-read sequence technologies.

59 BASIC BIOLOGICAL SCIENCES↗

NASA NTRS1977

Computer program for analysis of coupled-cavity traveling wave tubes

A flexible, accurate, large signal computer program was developed for the design of coupled cavity traveling wave tubes. The program is written in FORTRAN IV for an IBM 360/67 time sharing system. The beam is described by a disk model and the slow wave structure by a sequence of cavities, or cells. The computational approach is arranged so that each cavity may have geometrical or electrical parameters different from those of its neighbors. This allows the program user to simulate a tube of almost arbitrary complexity. Input and output couplers, severs, complicated velocity tapers, and other features peculiar to one or a few cavities may be modeled by a correct choice of input data. The beam-wave interaction is handled by an approach in which the radio frequency fields are expanded in solutions to the transverse magnetic wave equation. All significant space harmonics are retained. The program was used to perform a design study of the traveling-wave tube developed for the Communications Technology Satellite. Good agreement was obtained between the predictions of the program and the measured performance of the flight tube.

Connolly, D. J.↗

NASA NTRS1987

Preliminary results from an investigation of AIS-1 data over an area of epithermal alteration: Plateau, Northern Queensland, Australia

Airborne Imaging Spectrometer-1 (AIS-1) data were flown over undifferentiated sequences of acid to intermediate volcanics and intrusives; meta-sediments; and a series of partially lateritized sedimentary rocks. The area exhibits a considerable spectral variability, after the suppression of striping effects. Log residual, and Internal Average Relative Reflectance (IARR) analytical techniques were used to enhance mineralogically related spectral features. Both methods produce similar results, but did not visually highlight mineral absorption features due to processing artifacts in areas of significant vegetation cover. The enhancement of mineral related absorption features was achieved using a hybrid processing approach based on the relative reflectance differences between vegetated and non-vegetated surfaces at 1.2 and 2.1 micron. The result is an image with little overall contrast, but which enhances the more subtle spectral features believed to be associated with clays and epidote. The AIS data was subject to interactive analysis using SPAM. Clear separation of clay and epidote related absorption features was apparent, and the identification of kaolinite was possible despite detrimental spectral effects.

Mackin, Steve↗