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At least 1,153 records · Page 64

UAVSAR Program: Initial Results from New Instrument Capabilities

UAVSAR is an imaging radar instrument suite that serves as NASA's airborne facility instrument to acquire scientific data for Principal Investigators as well as a radar test-bed for new radar observation techniques and radar technology demonstration. Since commencing operational science observations in January 2009, the compact, reconfigurable, pod-based radar has been acquiring L-band fully polarimetric SAR (POLSAR) data with repeat-pass interferometric (RPI) observations underneath NASA Dryden's Gulfstream-III jet to provide measurements for science investigations in solid earth and cryospheric studies, vegetation mapping and land use classification, archaeological research, soil moisture mapping, geology and cold land processes. In the past year, we have made significant upgrades to add new instrument capabilities and new platform options to accommodate the increasing demand for UAVSAR to support scientific campaigns to measure subsurface soil moisture, acquire data in the polar regions, and for algorithm development, verification, and cross-calibration with other airborne/spaceborne instruments.

P-band polarimetry↗

A Novel Spatial-Temporal Variational Quantum Circuit to Enable Deep Learning on NISQ Devices

Quantum computing presents a promising approach for machine learning with its capability for extremely parallel computation in high-dimension through superposition and entanglement. Despite its potential, existing quantum learning algorithms, such as Variational Quantum Circuits (VQCs), face challenges in handling more complex datasets, particularly those that are not linearly separable. What’s more, it encounters the deployability issue, making the learning models suffer a drastic accuracy drop after deploying them to the actual quantum devices. To overcome these limitations, this paper proposes a novel spatial-temporal design, namely “ST-VQC”, to integrate nonlinearity in quantum learning and improve the robustness of the learning model to noise. Specifically, ST-VQC can extract spatial features via a novel block-based encoding quantum sub-circuit coupled with a layer-wise computation quantum sub-circuit to enable temporal-wise deep learning. Additionally, a SWAP-Free physical circuit design is devised to improve robustness. These designs bring a number of hyperparameters. After a systematic analysis of the design space for each design component, an automated optimization framework is proposed to generate the ST-VQC quantum circuit. The proposed ST-VQC has been evaluated on two IBM quantum processors, ibm-cairo with 27 qubits and ibmq-lima with 7 qubits to assess its effectiveness. The results of the evaluation on the standard dataset for binary classification show that ST-VQC can achieve over 30% accuracy improvement compared with existing VQCs on actual quantum computers. Moreover, on a non-linear synthetic dataset, the STVQC outperforms a linear classifier by 27.9%, while the linear classifier using classical computing outperforms the existing VQC by 15.58%.

Li, Jinyang↗

Unsupervised learning approaches to characterizing heterogeneous samples using X-ray single-particle imaging

One of the outstanding analytical problems in X-ray single-particle imaging (SPI) is the classification of structural heterogeneity, which is especially difficult given the low signal-to-noise ratios of individual patterns and the fact that even identical objects can yield patterns that vary greatly when orientation is taken into consideration. Proposed here are two methods which explicitly account for this orientation-induced variation and can robustly determine the structural landscape of a sample ensemble. The first, termed common-line principal component analysis (PCA), provides a rough classification which is essentially parameter free and can be run automatically on any SPI dataset. The second method, utilizing variation auto-encoders (VAEs), can generate 3D structures of the objects at any point in the structural landscape. Both these methods are implemented in combination with the noise-tolerant expand–maximize–compress (EMC) algorithm and its utility is demonstrated by applying it to an experimental dataset from gold nanoparticles with only a few thousand photons per pattern. Both discrete structural classes and continuous deformations are recovered. These developments diverge from previous approaches of extracting reproducible subsets of patterns from a dataset and open up the possibility of moving beyond the study of homogeneous sample sets to addressing open questions on topics such as nanocrystal growth and dynamics, as well as phase transitions which have not been externally triggered.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

Automated thematic mapping and change detection of ERTS-1 images

Results of an automated thematic mapping investigation using ERTS-1 MSS images are presented. A diffraction pattern analysis of MSS images led to the development of spatial signatures for farm land, urban areas, and mountains. Four spatial features are employed to describe the spatial characteristics of image cells in the digital data. Three spectral features are combined with the spatial features to form a seven dimensional vector describing each cell. Then, the classification of the feature vectors is accomplished by using the maximum likelihood criterion. Three ERTS-1 images from the Phoenix, Arizona area were processed, and recognition rates between 85% and 100% were obtained for the terrain classes of desert, farms, mountains and urban areas. To eliminate the need for training data, a new clustering algorithm has also been developed.

Gramenopoulos, N.↗

Appendix B: Principles of computer processing of LANDSAT data

Computer processing facilitates extraction of information from every pixel by executing a variety of functional operations, called processed algorithms, in general or specialized routines. The best results are obtained when data from more than one multispectral band are used together. Multivariate tatistical analysis, computer tape characteristics, processing modes, and a choice of systems (batch or interactive) are discussed. The major operations in computer processing elaborated include: preprocessing, enhancement, effects of rationing, and classification. Techniques for multisource data correlation are considered with emphasis on geobased systems.

Source record↗

Compact Polarimetry in a Low Frequency Spaceborne Context

Compact polarimetry has been shown to be an interesting alternative mode to full polarimetry when global coverage and revisit time are key issues. It consists on transmitting a single polarization, while receiving on two. Several critical points have been identified, one being the Faraday rotation (FR) correction and the other the calibration. When a low frequency electromagnetic wave travels through the ionosphere, it undergoes a rotation of the polarization plane about the radar line of sight for a linearly polarized wave, and a simple phase shift for a circularly polarized wave. In a low frequency radar, the only possible choice of the transmit polarization is the circular one, in order to guaranty that the scattering element on the ground is illuminated with a constant polarization independently of the ionosphere state. This will allow meaningful time series analysis, interferometry as long as the Faraday rotation effect is corrected for the return path. In full-polarimetric (FP) mode, two techniques allow to estimate the FR: Freeman method using linearly polarized data, and Bickel and Bates theory based on the transformation of the measured scattering matrix to a circular basis. In CP mode, an alternate procedure is presented which relies on the bare surface scattering properties. These bare surfaces are selected by the conformity coefficient, invariant with FR. This coefficient is compared to other published classifications to show its potential in distinguishing three different scattering types: surface, doublebounce and volume. The performances of the bare surfaces selection and FR estimation are evaluated on PALSAR and airborne data. Once the bare surfaces are selected and Faraday angle estimated over them, the correction can be applied over the whole scene. The algorithm is compared with both FP techniques. In the last part of the paper, the calibration of a CP system from the point of view of classical matrix transformation methods in polarimetry is proposed.

radar polarization diversity↗

A multisensor approach to sea ice classification for the validation of DMSP-SSM/I passive microwave derived sea ice products

The validation of sea ice products derived from the Special Sensor Microwave Imager (SSM/I) on board a DMSP platform is examined using data from the Landsat MSS and NOAA-AVHRR sensors. Image processing techniques for retrieving ice concentrations from each type of imagery are developed and results are intercompared to determine the ice parameter retrieval accuracy of the SSM/I NASA-Team algorithm. For case studies in the Beaufort Sea and East Greenland Sea, average retrieval errors of the SSM/I algorithm are between 1.7 percent for spring conditions and 4.3 percent during freeze up in comparison with Landsat derived ice concentrations. For a case study in the East Greenland Sea, SSM/I derived ice concentration in comparison with AVHRR imagery display a mean error of 9.6 percent.

Steffen, K.↗

Benchmark Models for Classification of Radiation Type Induced in Immune Cells

NASA Biological and Physical Sciences and the Science Mission Directorate have published a benchmark dataset of mouse immune cells subjected to radiation-induced DNA damage. The dataset comprises ML-ready microscopic imagery of said cells, including labels indicating radiation type and dose. The machine learning team at NASA Interagency Implementation and Advanced Concept Team (IMPACT) created multiple benchmark models. Initially, we conducted a preliminary analysis using thresholding. The algorithm used thresholds on average brightness of the available images to classify them into their respective radiation type. We also tested machine learning approaches. Convolutional Neural Networks (CNN) emerged as the best-performing model. This poster presents the benchmark scores obtained by the models.

Vishal Perekadan↗

Filter pruning of Convolutional Neural Networks for text classification: A case study of cancer pathology report comprehension

Convolutional Neural Networks (CNN) have recently demonstrated effective performance in many Natural Language Processing tasks. In this study, we explore a novel approach for pruning a CNN's convolution filters using our new data-driven utility score. We have applied this technique to an information extraction task of classifying a dataset of cancer pathology reports by cancer type, a highly imbalanced dataset. Compared to standard CNN training, our new algorithm resulted in a nearly .07 increase in the micro-averaged F1-score and a strong .22 increase in the macro-averaged F1-score using a model with nearly a third fewer network weights. We show how directly utilizing a network's interpretation of data can result in strong performance gains, particularly with severely imbalanced datasets.

Yoon, Hong-Jun↗

Applying Pattern Recognition to High-Resolution Images to Determine Cellular Signaling Status

Two frequently used tools to acquire high-resolution images of cells are scanning electron microscopy (SEM) and atomic force microscopy (AFM). The former provides a nanometer resolution view of cellular features rapidly and with high throughput, while the latter enables visualizing hydrated and living cells. In current practice, these images are viewed by eye to determine cellular status, e.g. activated versus resting. Automatic and quantitative data analysis is lacking. This work develops an algorithm of pattern recognition that works very effectively for AFM and SEM images. Using rat basophilic leukemia (RBL) cells, our approach creates a support vector machine (SVM) to automatically classify resting and activated cells. 10-fold cross-validation with cells that are known to be activated or resting gives a good estimate of the generalized classification results. The pattern recognition of AFM images achieves 100% accuracy, while SEM reaches 95.4% for our images as well as images published in prior literature. This outcome suggests that our methodology could become an important and frequently used tool for researchers utilizing AFM and SEM for structural characterization as well as determining cellular signaling status and function.

60 APPLIED LIFE SCIENCES↗

Machine-z: Rapid Machine-Learned Redshift Indicator for Swift Gamma-Ray Bursts

Studies of high-redshift gamma-ray bursts (GRBs) provide important information about the early Universe such as the rates of stellar collapsars and mergers, the metallicity content, constraints on the re-ionization period, and probes of the Hubble expansion. Rapid selection of high-z candidates from GRB samples reported in real time by dedicated space missions such as Swift is the key to identifying the most distant bursts before the optical afterglow becomes too dim to warrant a good spectrum. Here, we introduce 'machine-z', a redshift prediction algorithm and a 'high-z' classifier for Swift GRBs based on machine learning. Our method relies exclusively on canonical data commonly available within the first few hours after the GRB trigger. Using a sample of 284 bursts with measured redshifts, we trained a randomized ensemble of decision trees (random forest) to perform both regression and classification. Cross-validated performance studies show that the correlation coefficient between machine-z predictions and the true redshift is nearly 0.6. At the same time, our high-z classifier can achieve 80 per cent recall of true high-redshift bursts, while incurring a false positive rate of 20 per cent. With 40 per cent false positive rate the classifier can achieve approximately 100 per cent recall. The most reliable selection of high-redshift GRBs is obtained by combining predictions from both the high-z classifier and the machine-z regressor.

gamma-ray burst: general↗

Bayesian classification of falls risk

Background. Prior research in falls risk prediction often relies on qualitative and/or clinical methods. There are two challenges with these methods. First, qualitative methods typically use falls history to determine falls risk. Second, clinical methods do not quantify the uncertainty in the classification decision. In this paper, we propose using Bayesian classification to predict falls risk using vectors of gait variables shown to contribute to falls risk. Research Questions: (1) Using a vector of risk ratios for specific gait variables shown to contribute to falls risk, how can older adults be classified as low or high falls risk? and (2) how can the uncertainty in the classifier decision be quantified when using a vector of gait variables? Methods. Using a pressure sensitive walkway, biomechanical measurements of gait were collected from 854 adults over the age of 65. In our method, we first determine low and high falls risk labels for vectors of risk ratios using the k-means algorithm. Next, the posterior probability of low or high falls risk class membership is obtained from a two component Gaussian mixture model (GMM) of gait vectors, which enables risk assessment directly from the underlying biomechanics. We classify the gait vectors using a threshold based on Youden's J statistic. Results. Through a Monte Carlo simulation and an analysis of the receiver operating characteristic (ROC), we demonstrate that our Bayesian classifier, when compared to the k-means falls risk labels, achieves an accuracy greater than 96% at predicting low or high falls risk. Significance. Our analysis indicates that our approach based on a Bayesian framework and an individual's underlying biomechanics can predict falls risk while quantifying uncertainty in the classification decision.

59 BASIC BIOLOGICAL SCIENCES↗

Botnet behaviour analysis: How would a data analytics-based system with minimum a priori information perform?

Botnets, as one of the most aggressive threats, has used different techniques, topologies, and communication protocols in different stages of their lifecycle since 2003. Hence, identifying botnets has become very challenging specifically given that they can upgrade their methodology at any time. Various detection approaches have been proposed by the cyber-security researchers, focusing on different aspects of these threats. In this work, 5 different botnet detection approaches are investigated. These systems are selected based on the technique used and type of data used where 2 are public rule–based systems (BotHunter and Snort) and the other 3 use machine learning algorithm with different feature extraction methods (packet payload based and traffic flow based). On the other hand, 4 of these systems are based on a priori knowledge while one is using minimum a priori information. The objective here is to evaluate the effectiveness of these approaches under different scenarios (eg, multi-botnet and single-botnet classifications) as well as exploring how a system with minimum a priori information would perform. The goal is to investigate if a system with minimum a priori information could result in a competitive performance compared to systems using a priori knowledge. The evaluation is shown on 24 publicly available botnet data sets. Results indicate that a machine learning–based system with minimum a priori information not only achieves a very high performance but also generalizes much better than the other systems evaluated on a wide range of botnet structures (from centralized to decentralized botnets).

97 MATHEMATICS AND COMPUTING↗

Classification of Semiconductors Using Photoluminescence Spectroscopy and Machine Learning

Photoluminescence spectroscopy is a nondestructive optical method that is widely used to characterize semiconductors. In the photoluminescence process, a substance absorbs photons and emits light with longer wavelengths via electronic transitions. This paper discusses a method for identifying substances from their photoluminescence spectra using machine learning, a technique that is efficient in making classifications. Neural networks were constructed by taking simulated photoluminescence spectra as the input and the identity of the substance as the output. Here, six different semiconductors were chosen as categories: gallium oxide (Ga 2 O 3 ), zinc oxide (ZnO), gallium nitride (GaN), cadmium sulfide (CdS), tungsten disulfide (WS 2 ), and cesium lead bromide (CsPbBr 3 ). The developed algorithm has a high accuracy (>90%) for assigning a substance to one of these six categories from its photoluminescence spectrum and correctly identified a mixed Ga 2 O 3 /ZnO sample.

47 OTHER INSTRUMENTATION↗

Benchmarking of alignment-free sequence comparison methods

Background: Alignment-free (AF) sequence comparison is attracting persistent interest driven by data-intensive applications. Hence, many AF procedures have been proposed in recent years, but a lack of a clearly defined benchmarking consensus hampers their performance assessment. Results: Here, we present a community resource (http://afproject.org) to establish standards for comparing alignment-free approaches across different areas of sequence-based research. We characterize 74 AF methods available in 24 software tools for five research applications, namely, protein sequence classification, gene tree inference, regulatory element detection, genome-based phylogenetic inference, and reconstruction of species trees under horizontal gene transfer and recombination events. Conclusion: The interactive web service allows researchers to explore the performance of alignment-free tools relevant to their data types and analytical goals. It also allows method developers to assess their own algorithms and compare them with current state-of-the-art tools, accelerating the development of new, more accurate AF solutions

59 BASIC BIOLOGICAL SCIENCES↗

Putting Priors in Mixture Density Mercer Kernels

This paper presents a new methodology for automatic knowledge driven data mining based on the theory of Mercer Kernels, which are highly nonlinear symmetric positive definite mappings from the original image space to a very high, possibly infinite dimensional feature space. We describe a new method called Mixture Density Mercer Kernels to learn kernel function directly from data, rather than using predefined kernels. These data adaptive kernels can en- code prior knowledge in the kernel using a Bayesian formulation, thus allowing for physical information to be encoded in the model. We compare the results with existing algorithms on data from the Sloan Digital Sky Survey (SDSS). The code for these experiments has been generated with the AUTOBAYES tool, which automatically generates efficient and documented C/C++ code from abstract statistical model specifications. The core of the system is a schema library which contains template for learning and knowledge discovery algorithms like different versions of EM, or numeric optimization methods like conjugate gradient methods. The template instantiation is supported by symbolic- algebraic computations, which allows AUTOBAYES to find closed-form solutions and, where possible, to integrate them into the code. The results show that the Mixture Density Mercer-Kernel described here outperforms tree-based classification in distinguishing high-redshift galaxies from low- redshift galaxies by approximately 16% on test data, bagged trees by approximately 7%, and bagged trees built on a much larger sample of data by approximately 2%.

Srivastava, Ashok N.↗

Antarctic sea ice concentrations inferred from Nimbus 5 ESMR and Landsat imagery

Landsat Multispectral Scanner near-infrared band images (MSS-7) are used to calculate Antarctic ice concentration values and these results are quantitatively compared to those derived from Nimbus 5 electrically scanning microwave radiometer (ESMR) brightness temperature data. The set of images includes regions near the ice edge and near the continental boundary during late winter or spring. The percentage of ice cover is derived from the microwave data, using an algorithm that incorporates the brightness temperature emissivity and interpolated climatological physical temperatures and that is not dependent on spatial resolution. Cloud-free Landsat images are used to provide an alternative determination of large-scale ice concentrations, but this method is limited in its ability to resolve individual ice flows, especially near the ice edge. A proportional classification procedure is applied to Landsat data based on observed reflection and the results are correlated with similarly-derived ESMR ice concentration values. The corresponding ice concentration values are found to agree to + or - 15%, with the largest uncertainties occurring in regions of low ice concentration.

Comiso, J. C.↗

Remote sensing of Earth terrain

Remote sensing of earth terrain is examined. The layered random medium model is used to investigate the fully polarimetric scattering of electromagnetic waves from vegetation. The model is used to interpret the measured data for vegetation fields such as rice, wheat, or soybean over water or soil. Accurate calibration of polarimetric radar systems is essential for the polarimetric remote sensing of earth terrain. A polarimetric calibration algorithm using three arbitrary in-scene reflectors is developed. In the interpretation of active and passive microwave remote sensing data from the earth terrain, the random medium model was shown to be quite successful. A multivariate K-distribution is proposed to model the statistics of fully polarimetric radar returns from earth terrain. In the terrain cover classification using the synthetic aperture radar (SAR) images, the applications of the K-distribution model will provide better performance than the conventional Gaussian classifiers. The layered random medium model is used to study the polarimetric response of sea ice. Supervised and unsupervised classification procedures are also developed and applied to synthetic aperture radar polarimetric images in order to identify their various earth terrain components for more than two classes. These classification procedures were applied to San Francisco Bay and Traverse City SAR images.

Kong, Jin AU↗