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NASA NTRS2019

GeneLab: A Systems Biology Platform for Omics Analysis: Disseminate and Reuse Data, Tools, and Samples Post-Project

NASA's GeneLab includes an open-access repository of some 200 plus omics datasets generated by biological experiments relevant to spaceflight (including simulated cosmic radiation and microgravity). In order to maximize the intelligibility of these data, particularly for users with limited bioinformatics knowledge, GeneLab is now transforming the data in the repository into actual biological and physiological knowledge of the genetic and proteomic signatures found in these samples. This processed data is being derived by establishing standard data analysis workflows vetted by 114 scientists who are members of the four GeneLab Analysis Working Groups (Animal AWG, Plant AWG, Microbe AWG, Multi-Omics AWG). AWG members from institutes spanning the U.S. and four other countries participate on a voluntary basis. The AWGs meet monthly to discuss data mining, compare results and interpretations, and test forthcoming releases of the GeneLab Data Systems (GLDS). GLDS version 3.0 has been available to the general public since October 1st 2018, and has been providing a professional state-of-the-art bioinformatics platform for everyone in the space biology community to upload their data into a space biology omics data commons, to process their data with vetted standard workflows and to compare to existing analyses. The user interface for the platform is being designed to be accessible to a broad variety of users including those with limited bioinformatics experience, including high school and college students who can use it to learn about omics data analysis and space biology. As such, Genelab will constitute a powerful general public outreach capability of NASA and the Space Biology community at large. Data mining of the GeneLab database by the AWG has already started generating very interesting findings, including reports linking specific spaceflight conditions such as radiation, microgravity or carbon dioxide levels to molecular changes seen across various species. In this presentation, we will report on the current and future objectives for GeneLab, and review recent studies reported by the various AWGs relating molecular changes observed in various animal models and tissue with microgravity, radiation, circadian rhythm, hydration and carbon dioxide conditions.

Omics↗

NASA NTRSDate not supplied

Maximizing Spaceflight Biological Data with Omics Analytics: The NASA GeneLab Database

NASA’s GeneLab includes an open-access repository of some 250+ omics datasets generated by biological experiments relevant to spaceflight including simulated cosmic radiation and microgravity. In order to maximize the intelligibility of these data, particularly for users with limited bioinformatics background, GeneLab has become a knowledgebase platform converting raw genetic and proteomic signatures found in flight samples into biological and physiological meanings. A large community of more than 100 scientists has rallied behind GeneLab and organized into four Analysis Working Groups (AWGs: Animal, Plant, Microbe, and Multi-Omics). Together, the AWGs have gained scientific recognition worldwide by establishing a consortium in charge of adopting new complex standards for data analysis workflows and omics sample processing in a rapidly evolving field. We will demonstrate the usage of the repository with smart search capability, an online controlled-access toolshed "Galaxy" to process user data with vetted standard workflows, a workspace for data sharing and a data submission portal with ontology control for better metadata curation. The GeneLab visualization portal will also be demonstrated, showing how anyone without formal training in bioinformatics can now browse the space biology omics data to discover new biology and potential solutions to improve life in space.

Sylvain Vincent Costes↗

NASA NTRSDate not supplied

GeneLab: The NASA System Biology Platform for Space Omics Repository, Analysis and Visualization

GeneLab↗

DOE OSTI2026

Validation of the DESI DR2 Ly$α$ forest full-shape analysis

We present the validation of the Dark Energy Spectroscopic Instrument (DESI) Data Release 2 (DR2) Lyman-$α$ (Ly$α$) forest full-shape analysis. This analysis combines three-dimensional Ly$α$ forest auto-correlations and cross-correlations with quasars to extract information from both the baryon acoustic oscillation (BAO) feature and the broadband clustering signal, with primary emphasis on the Alcock-Paczynski (AP) measurement. Compared to the DESI DR1 analysis, the DR2 validation uses substantially larger and more realistic mock datasets, including CoLoRe 2LPT and AbacusSummit Ly$α$ forest simulations. The modeling framework is also improved through analytic marginalization over small scales ($<10$$h^{-1}$Mpc) and the impact of ultraviolet background fluctuations. The validation program was completed prior to unblinding and defines quantitative requirements for the cosmological parameters of interest, which are evaluated using hundreds of mock realizations. We further test the analysis through independent fits to the auto- and cross-correlations, multiple catalog splits, and a broad suite of analysis and modeling variations applied to both mocks and blinded observational data. We find that the BAO and AP parameters satisfy all validation requirements and remain stable across all tests. In contrast, mock studies reveal a significant bias in the inferred growth-rate parameter $fσ_8$, leading us to exclude this measurement from the final analysis. The consistency across mocks, data splits, and robustness tests demonstrates that the DR2 Ly$α$ full-shape analysis provides a reliable and substantially improved broadband AP measurement over previous Ly$α$ forest studies.

Herbold, M. [Chicago U., KICP; Ohio State U.] (ORC↗

DOE OSTI2016

Seasonality of Precipitation over Himalayan Watersheds in CORDEX South Asia and their Driving CMIP5 Experiments

Since the Coupled Model Intercomparison Project Phase 5 (CMIP5) experiments exhibit limited skill in reproducing the statistical properties of prevailing precipitation regimes over the major Himalayan watersheds (Indus, Ganges, Brahmaputra and Mekong), this study evaluates the anticipated added skill of their dynamically refined simulations performed under the framework of Coordinated Regional Climate Downscaling Experiments for South Asia (CX-SA). For this, the fidelity of eight CX-SA experiments against their six driving CMIP5 experiments is assessed for the historical period (1971–2005) in terms of time-dependent statistical properties (onset/retreat timings and rapid fractional accumulation—RFA) of the dominant summer monsoonal precipitation regime (MPR). Further, a self-defining seasonality index (SI), which is a product of precipitation and the distance of its actual distribution relative to its uniform distribution (relative entropy—RE), has been computed for MPR, westerly precipitation regime (WPR) and annual precipitation. The time evolution of precipitation, RE and SI has also been analyzed. Results suggest that CX-SA experiments simulate even higher wet biases than their driving CMIP5 experiments over all study basins, mainly due to higher wet biases simulated over the Himalayas and Tibetan Plateau. Most of the CX-SA experiments suggest unrealistic timings of the monsoon onset that are far earlier than their driving CMIP5 experiments for all basins. Generally, CX-SA experiments feature higher underestimation of RFA slope, RE and SI, distancing their driving CMIP5 experiments farther from observations. Interestingly, regardless of the diverse skill of CMIP5 experiments, their fine scale CX-SA experiments exhibit quite a similar skill when downscaled by the same regional climate model (RCM), indicating RCM’s ability to considerably alter the driving datasets. Lastly, these findings emphasize on improving the fidelity of simulated precipitation regimes over the Himalayan watersheds by exploiting the potential of RCMs in term of microphysics, resolutions and convective closures, and preferably, on resolving the crucial fine scale processes further down to their representative (meso-to-local) scales.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2023

Active Learning Framework

Machine learning (ML) of interatomic potentials show great promise to accelerate scientific simulation, e.g., by emulating expensive computations at a high accuracy but much reduced computational cost. Training datasets are calculated from computationally expensive ab initio quantum mechanics methods, density functional theory (DFT). Trained on this data, an ML model can be very successful in predicting energy and forces for new atomic configurations. A critical factor is the quality and diversity of the training dataset. Thus, a highly automated approach to dataset construction based on active learning framework is designed suitable for material physics. The active learning scheme begins with fully randomized atomic configurations. Then, many Molecular Dynamics (MD) trajectories are simulated using current ML potentials, where each MD trajectory is initialized to a random disordered configuration. The temperature is varied in order to diversify the sampled configuration during these simulations. The variance of predictions for eight neural networks within an ensemble is analyzed to determine whether the model is operating as expected. This helps in determining whether collecting more data would be helpful to the model by checking the ensemble variance is greater than the threshold. In this case, the MD trajectory is terminated and the final atomic configuration is placed on a queue (SQL database) for DFT calculations and added to training dataset. Periodically, ML model is retrained to the updated training model. This Active Learning loop is iterated until the cost of MD simulations becomes prohibitively expensive. The MD simulations will hopefully be sufficiently robust to support nucleation after many active learning iterations. In this sense, active learning scheme must automatically discover the important low energy and nonequilibrium physics.

Nebgen, Benjamin↗

DOE OSTI2011

The simulation of 3D microcalcification clusters in 2D digital mammography and breast tomosynthesis

Purpose: This work proposes a new method of building 3D models of microcalcification clusters and describes the validation of their realistic appearance when simulated into 2D digital mammograms and into breast tomosynthesis images. Methods: A micro-CT unit was used to scan 23 breast biopsy specimens of microcalcification clusters with malignant and benign characteristics and their 3D reconstructed datasets were segmented to obtain 3D models of microcalcification clusters. These models were then adjusted for the x-ray spectrum used and for the system resolution and simulated into 2D projection images to obtain mammograms after image processing and into tomographic sequences of projection images, which were then reconstructed to form 3D tomosynthesis datasets. Six radiologists were asked to distinguish between 40 real and 40 simulated clusters of microcalcifications in two separate studies on 2D mammography and tomosynthesis datasets. Receiver operating characteristic (ROC) analysis was used to test the ability of each observer to distinguish between simulated and real microcalcification clusters. The kappa statistic was applied to assess how often the individual simulated and real microcalcification clusters had received similar scores (''agreement'') on their realistic appearance in both modalities. This analysis was performed for all readers and for the real and the simulated group of microcalcification clusters separately. ''Poor'' agreement would reflect radiologists' confusion between simulated and real clusters, i.e., lesions not systematically evaluated in both modalities as either simulated or real, and would therefore be interpreted as a success of the present models. Results: The area under the ROC curve, averaged over the observers, was 0.55 (95% confidence interval [0.44, 0.66]) for the 2D study, and 0.46 (95% confidence interval [0.29, 0.64]) for the tomosynthesis study, indicating no statistically significant difference between real and simulated lesions (p > 0.05). Agreement between allocated lesion scores for 2D mammography and those for the tomosynthesis series was poor. Conclusions: The realistic appearance of the 3D models of microcalcification clusters, whether malignant or benign clusters, was confirmed for 2D digital mammography images and the breast tomosynthesis datasets; this database of clusters is suitable for use in future observer performance studies related to the detectability of microcalcification clusters. Such studies include comparing 2D digital mammography to breast tomosynthesis and comparing different reconstruction algorithms.

62 RADIOLOGY AND NUCLEAR MEDICINE↗

DOE OSTI2024

Development of inter-grid-cell lateral unsaturated and saturated flow model in the E3SM Land Model (v2.0)

Abstract. The lateral transport of water in the subsurface is important in modulating terrestrial water energy distribution. Although a few land surface models have recently included lateral saturated flow within and across grid cells, it is not a default configuration in the Climate Model Intercomparison Project version 6 experiments. In this work, we developed the lateral subsurface flow model within both unsaturated and saturated zones in the Energy Exascale Earth System Model (E3SM) Land Model version 2 (ELMv2.0). The new model, called ELMlat, was benchmarked against PFLOTRAN, a 3D subsurface flow and transport model, for three idealized hillslopes that included a convergent hillslope, divergent hillslope, and tilted V-shaped hillslope with variably saturated initial conditions. ELMlat showed comparable performance against PFLOTRAN in terms of capturing the dynamics of soil moisture and groundwater table for the three benchmark hillslope problems. Specifically, the mean absolute errors (MAEs) of the soil moisture in the top 10 layers between ELMlat and PFLOTRAN were within 1 %±3 %, and the MAEs of water table depth were within ±0.2 m. Next, ELMlat was applied to the Little Washita experimental watershed to assess its prediction of groundwater table, soil moisture, and soil temperature. The spatial pattern of simulated groundwater table depth agreed well with the global groundwater table benchmark dataset generated from a global model calibrated with long-term observations. The effects of lateral groundwater flow on the energy flux partitioning were more prominent in lowland areas with shallower groundwater tables, where the difference in simulated annual surface soil temperature could reach 0.3–0.4 ∘C between ELMv2.0 and ELMlat. Incorporating lateral subsurface flow in ELM improves the representation of the subsurface hydrology, which will provide a good basis for future large-scale applications.

58 GEOSCIENCES↗

DOE OSTI2021

Graph-Based Approaches for Predicting Solvation Energy in Multiple Solvents: Open Datasets and Machine Learning Models

The solvation properties of molecules, often estimated using quantum chemical simulations, are important in the synthesis of energy storage materials, drugs, and industrial chemicals. Here, we develop machine learning models of solvation energies to replace expensive quantum chemistry calculations with inexpensive-to-compute message-passing neural network models that require only the molecular graph as inputs. Our models are trained on a new database of solvation energies for 130,258 molecules taken from the QM9 dataset computed in five solvents (acetone, ethanol, acetonitrile, dimethyl sulfoxide, and water) via an implicit solvent model. Our best model achieves a mean absolute error of 0.5 kcal/mol for molecules with nine or fewer non-hydrogen atoms and 1 kcal/mol for molecules with between 10 and 14 non-hydrogen atoms. We make the entire dataset of 651,290 computed entries openly available and provide simple web and programmatic interfaces to enable others to run our solvation energy model on new molecules. This model calculates the solvation energies for molecules using only the SMILES string and also provides an estimate of whether each molecule is within the domain of applicability of our model. We envision that the dataset and models will provide the functionality needed for the rapid screening of large chemical spaces to discover improved molecules for many applications.

25 ENERGY STORAGE↗

DOE OSTI2015

Robust optimization methods for cardiac sparing in tangential breast IMRT

Purpose: In left-sided tangential breast intensity modulated radiation therapy (IMRT), the heart may enter the radiation field and receive excessive radiation while the patient is breathing. The patient’s breathing pattern is often irregular and unpredictable. We verify the clinical applicability of a heart-sparing robust optimization approach for breast IMRT. We compare robust optimized plans with clinical plans at free-breathing and clinical plans at deep inspiration breath-hold (DIBH) using active breathing control (ABC). Methods: Eight patients were included in the study with each patient simulated using 4D-CT. The 4D-CT image acquisition generated ten breathing phase datasets. An average scan was constructed using all the phase datasets. Two of the eight patients were also imaged at breath-hold using ABC. The 4D-CT datasets were used to calculate the accumulated dose for robust optimized and clinical plans based on deformable registration. We generated a set of simulated breathing probability mass functions, which represent the fraction of time patients spend in different breathing phases. The robust optimization method was applied to each patient using a set of dose-influence matrices extracted from the 4D-CT data and a model of the breathing motion uncertainty. The goal of the optimization models was to minimize the dose to the heart while ensuring dose constraints on the target were achieved under breathing motion uncertainty. Results: Robust optimized plans were improved or equivalent to the clinical plans in terms of heart sparing for all patients studied. The robust method reduced the accumulated heart dose (D10cc) by up to 801 cGy compared to the clinical method while also improving the coverage of the accumulated whole breast target volume. On average, the robust method reduced the heart dose (D10cc) by 364 cGy and improved the optBreast dose (D99%) by 477 cGy. In addition, the robust method had smaller deviations from the planned dose to the accumulated dose. The deviation of the accumulated dose from the planned dose for the optBreast (D99%) was 12 cGy for robust versus 445 cGy for clinical. The deviation for the heart (D10cc) was 41 cGy for robust and 320 cGy for clinical. Conclusions: The robust optimization approach can reduce heart dose compared to the clinical method at free-breathing and can potentially reduce the need for breath-hold techniques.

60 APPLIED LIFE SCIENCES↗

DOE OSTI2026

Astrometric microlensing probes of the isolated neutron star population with Roman

Notoriously hard to detect and study, isolated neutron stars (NSs) might provide valuable answers to fundamental questions about stellar evolution and explosion physics. With the upcoming Roman Space Telescope, scheduled for launch in 2026, a new and powerful channel for their detection will become available: astrometric microlensing. We set out to create a realistic sample of simulated gravitational microlensing events as observed by Roman with the Galactic Bulge Time Domain Survey. We focus in particular on the population of NS lenses, which has until now been largely understudied. We used dedicated Galactic models tailored for application to microlensing by compact objects. In addition to populations of stars, white dwarfs, and black holes, we simulated four different NS populations with Maxwellian natal kick distributions: v = (150, 250, 350, 450) km/s. For each simulation, we applied projected Roman precision, cadence, and detectability criteria. We found that the parameter space log10 t E –log 10 θ E , which will be accessible to Roman observations, is efficient for the classification of stellar remnants. We found a feature in this space that is characteristic of NSs; using this feature, optimal samples of NS candidates can be constructed from Roman -like datasets. We describe the dependence of the observable parameter distributions on the assumed mean kick velocities. As the effects of natal kicks are very complex and mutually counteracting, we suggest that more detailed studies focused on the dynamics of NSs are needed in anticipation of Roman and future surveys. We estimate that Roman will observe approximately 11 000 microlensing events, including ~100 with NS lenses, whose photometric and astrometric signals are detectable; the event yield decreases by 38% when gap-filling low-cadence observations are not included. We make all simulated microlensing event datasets publicly available in preparation for Roman data.

79 ASTRONOMY AND ASTROPHYSICS↗

DOE OSTI2017

The SCEC Unified Community Velocity Model Software Framework

Crustal seismic-velocity models and datasets play a key role in regional 3D numerical earthquake ground-motion simulation, full waveform tomography, and modern physics-based probabilistic earthquake-hazard analysis, as well as in other related fields, including geophysics and earthquake engineering. Most of these models and datasets, often collectively identified as Community Velocity Models (CVMs), synthesize information from multiple sources and are delivered to users in variable formats, including computer applications that allow for interactive querying of material properties, namely P- and S-wave velocities and density ρ. Computational users often require massive and repetitive access to velocity models and datasets, and such access is often unpractical and difficult due to a lack of standardized methods and procedures. To overcome these issues and to facilitate access by the community to these models, the Southern California Earthquake Center developed the Unified CVM (UCVM) software framework, an open-source collection of tools that enables users to access one or more seismic-velocity models, while providing a standard query interface. Here, we describe the research challenges that motivated the development of UCVM, its software design, development approach, and basic capabilities, as well as a few examples of seismic-modeling applications that use UCVM.

Geochemistry & Geophysics↗

NASA NTRS2023

Seasonal Soil Freeze/Thaw Variability Across North America via Ensemble Land Surface Modeling

Land surface modeling provides the opportunity to investigate winter soil processes such as soil freezing and thawing over large domains. However, the variability in simulated winter soil characteristics among land surface models and forcing datasets is not well understood. In this study, a nine-member ensemble was employed to characterize the spatial and inter-annual variability of three winter soil characteristics, annual number of frozen days, annual minimum temperature and annual number of freeze-thaw cycles over North America during the water years 2010–2016. The ensemble, including three land surface model (JULES, Noah2.7.1 and Noah-MP) and three forcing datasets (ECMWF, GDAS and MERRA2), was developed through the Snow Ensemble Uncertainty Project (SEUP). In many regions, there was remarkably good agreement across the ensemble for the winter soil temperatures. However, the variability among the ensemble's annual number of frozen days, as quantified with standard deviation, exceeded 150 days at the northern Pacific coastline. While the differences among the ensemble members' annual minimum temperature were typically <3 °C, the differences exceeded 6 °C north of 50°N. The ensemble members generally agreed within one to three freeze-thaw cycles in mid latitude regions, Alaska, and the south and west coasts of the USA. High variability among the ensemble, more than six freeze-thaw cycles, occurred in the Great Plains, northern Pacific coastline, and along the Appalachian Mountains. Differences in winter soil temperature characteristics were more apparent among the LSMs rather than the meteorological forcing datasets. Except for maritime regions, the Noah2.7.1 members had the fewest annual number of frozen days and the least number of freeze-thaw cycles. Noah2.7.1 also had the coldest annual minimum temperatures except for ephemeral regions. Comparisons between in-situ observations and the SEUP estimates of winter soil characteristics revealed that the modeled frozen period was much longer than observed, that the modeled annual minimum temperatures were much colder than observed, and the modeled freeze-thaw cycles occurred more frequently than observed. Excluding the high latitude sites, the observed frozen period is less than two months with the minimum temperature above − 5 °C at most of the studied sites, while the ensemble members simulated, on average, a four month frozen period with − 10 °C minimum temperature. Errors in capturing snow during the accumulation period appear to impact differences in modeled versus observed soil temperature throughout the entire winter.

Soil freeze/thaw↗

NASA NTRS2018

GeneLab: "Omics" Data Systems for Spaceflight and Simulated Spaceflight Environment

Determining the biological impact of spaceflight through novel approaches is essential to reduce the health risks to astronauts for long-term space missions. The current established health risks due to spaceflight are only reflecting known symptomatic and physiologic responses and do not reflect early onset of other potential diseases. There are many unknown variables which still need to be identified to fully understand the health impacts due to the environmental factors in space. One method to uncover potential novel biological mechanisms responsible for health risks in astronauts is by utilizing NASA's GeneLab Data Systems (genelab.nasa.gov). GeneLab is public repository that hosts multiple omics datasets generated from space biology experiments that include experiments flown in space, simulated cosmic radiation experiments, and simulated microgravity experiments. This presentation will provide an overview of GeneLab and examples of analysis that are being done with GeneLab datasets. These example will include novel data and work being generated with various scientists around the world involved with GeneLab's Analysis Working Groups (AWG) that are assisting with the development of pipelines and advancing GeneLab to the next phase, a publication from GeneLab discovering novel Carbon Dioxide impact due to rodent habitats, another publication from GeneLab discovering a potential master regulator responsible for health risk associated due to spaceflight, and potential cardiovascular risk from space radiation

spaceflight↗

DOE OSTI2019

Capturing Hidden Geochemical Anomalies in Scarce Data by Fractal Analysis and Stochastic Modeling

Fractal/multifractal modeling is a widely used geomathematical approach to capturing different populations in geochemical mapping. The rationale of this methodology is based on empirical frequency density functions attained from global or local distributions. This approach is quite popular because of its simplicity and versatility; it accounts for the frequency and spatial distribution of geochemical data considering self-similarity across a range of scales. Using this technique for detection of geochemical anomalies in scarce data, however, is problematic and can lead to systematic bias in the characterization of the underlying populations. In this paper, an innovative technique is presented that provides good results without a priori assumptions. A simulation approach is adopted for fractal analysis by generating different possible distribution scenarios for the variable under study to reveal the underlying populations that are frequently hidden due to lack of data. The proposed technique is called the global simulated size–number method, and it is validated in a case study with two synthetic datasets and another case study with real dataset from the Ushtagan gold deposit in northeast Kazakhstan.

58 GEOSCIENCES↗

NASA NTRS2019

Improving Surface Soil Moisture Estimates in West Africa Through GRACE Data Assimilation

Recent annual trends of precipitation and terrestrial water storage (TWS) in West Africa have been increasing over the past decade. Despite a significant impact of soil moisture on the TWS in West Africa, there is little research on the recent spatial and temporal behaviors of surface soil moisture (SSM) along with the hydrological trends and variability in West Africa. In this study, we assimilate TWS estimates from the Gravity Recovery and Climate Experiment (GRACE) mission into the Catchment Land Surface Model (CLSM) and evaluate its impacts on SSM simulations for the years, 2002–2017. The evaluation is performed using reference datasets: the African Monsoon Multidisciplinary Analysis (AMMA) in situ soil moisture observations, three currently available microwave satellite SSM observations from the Advanced Scatterometer (ASCAT), the Soil Moisture Ocean Salinity (SMOS), and the Soil Moisture Active Passive (SMAP) satellites and also the triple collocation analysis (TCA). Overall, modeled SSM shows good agreement with the reference datasets in terms of the anomaly SSM correlations. However, both modeled and ASCAT SSM are limited in their representation of the drying rates, as observed by ground observations, SMOS and SMAP estimates. Further, GRACE data assimilation results in improved SSM simulations in the humid regions with large annual TWS variability. This study demonstrates the utility of land data assimilation to inform hydrological conditions in West Africa, where soil moisture monitoring is necessary for water resource and livestock management.

West Africa↗

DOE OSTI2026

Citation network datasets for benchmarking spiking graph neural networks on experimental neuromorphic hardware

Spiking neural networks (SNNs) running on neuromorphic computers offer an energy-efficient alternative for AI tasks. Recently, spiking graph neural networks (S-GNNs) have been shown to produce encouraging results on benchmark citation network datasets such as Cora, CiteSeer, and PubMed for node classification tasks. These S-GNNs were run on SNN simulators only because they contain up to tens of thousands of neurons and up to millions of synapses, translating poorly to neuromorphic hardware. Therefore, in this paper, we create a suite of benchmark datasets from the CiteSeer dataset that can be accommodated on current neuromorphic hardware platforms. Our contribution consists of a collection of three datasets. First, we have an induced subgraph of CiteSeer, which we call MiniSeer, containing 2110 papers, 3604 binary features, and 6 topics. Second, MicroSeer is a very small dataset consisting of 84 papers, 1227 features, and 6 topics. Lastly, BiteSeer is a collection of 15 binary classification datasets. We present creation of these datasets along with accuracies, running times, and spike counts when simulated. We believe that our results in this paper will be used by the neuromorphic community to benchmark, test, and develop neuromorphic hardware and simulators.

Zhu, Kevin [George Mason University, Virginia]↗

DOE OSTI2018

Development of city buildings dataset for urban building energy modeling

Urban building energy modeling (UBEM) is becoming a proven tool to support energy efficiency programs for buildings in cities. Development of a city-scale dataset of the existing building stock is a critical step of UBEM to automatically generate energy models of urban buildings and simulate their performance. This study introduces data needs, data standards, and data sources to develop city building datasets for UBEM. First, a literature review of data needs for UBEM was conducted. Then, the capabilities of the current data standards for city building datasets were reviewed. Moreover, the existing public data sources from several pioneer cites were studied to evaluate whether they are adequate to support UBEM. The results show that most cities have adequate public data to support UBEM; however, the data are represented in different formats without standardization, and there is a lack of common keys to make the data mapping easier. Finally, a case study is presented to integrate the diverse data sources from multiple city departments of San Francisco. The data mapping process is introduced and discussed. It is recommended to use the unique building identifiers as the common keys in the data sources to simplify the data mapping process. Furthermore, the integration methods and workflow are applied to other U.S. cities for developing the city-scale datasets of their existing building stock, including San Jose, Los Angeles, and Boston.

32 ENERGY CONSERVATION, CONSUMPTION, AND UTILIZATI↗