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At least 1,153 records · Page 64

Top-down proteomics

Proteoforms arising from posttranslational modifications, genetic polymorphisms, and RNA splice variants, play a pivotal role as the key drivers in biology. Thus, a comprehensive understanding of proteoforms is essential for unraveling the intricacies of biological systems and bridging the gap between genotype and phenotype. By analyzing whole proteins without digestion, top-down proteomics (TDP) provides a holistic view of the proteome and presents a next-generation approach for deciphering protein function, uncovering disease mechanisms, and advancing precision medicine. This Primer embarks on a journey into the world of TDP by encapsulating its historical context, underlying principles, recent advances, and an outlook on the future of TDP. The experimental section navigates instrumentation, sample preparation, intact protein separation, tandem mass spectrometry techniques, and data collection. Results decipher raw data, visualize intact protein spectra, unravel data analysis, and explain proteoform identification, characterization, and quantitation, as well as statistical analysis. Various applications of TDP spanning the human proteoform project, biomedical, biopharmaceutical, and clinical applications are described. These are complemented by discussions on measurement reproducibility, limitations, and a forward-looking perspective outlining uncharted waters where the field can advance, and potential exciting future applications of TDP.

Roberts, David S.↗

Imaging beyond the surface region: Probing hidden materials via atomic force microscopy

Probing material properties at surfaces down to the single-particle scale of atoms and molecules has been achieved, but high-resolution subsurface imaging remains a nanometrology challenge due to electromagnetic and acoustic dispersion and diffraction. The atomically sharp probe used in scanning probe microscopy (SPM) has broken these limits at surfaces. Subsurface imaging is possible under certain physical, chemical, electrical, and thermal gradients present in the material. Of all the SPM techniques, atomic force microscopy has entertained unique opportunities for nondestructive and label-free measurements. Here, we explore the physics of the subsurface imaging problem and the emerging solutions that offer exceptional potential for visualization. We discuss materials science, electronics, biology, polymer and composite sciences, and emerging quantum sensing and quantum bio-imaging applications. The perspectives and prospects of subsurface techniques are presented to stimulate further work toward enabling noninvasive high spatial and spectral resolution investigation of materials including meta- and quantum materials.

74 ATOMIC AND MOLECULAR PHYSICS↗

Hydropower Fleet Intelligence

The Hydropower Fleet Intelligence application can integrate hydropower facilities data sources to perform analyses on asset age, reliability and costs, as well as produce visualizations that combine time series data collected by mechanical component sensors with event history.

Foley, Molly↗

Lake-Effect Snowstorm Events and Associated Snowfall Totals Integrated from NOAA Storm Reports, ERA5, and HRRR for the Laurentian Great Lakes (1997–2024)

Lake-effect snowstorms are localized, impactful winter weather phenomena that can generate substantial snowfall totals and pose significant challenges for forecasting, transportation, and regional infrastructure. To support the analysis and modeling of these events, this dataset compiles observational reports of lake-effect snowstorms alongside corresponding snowfall estimates derived from gridded atmospheric datasets. The observational component of the data originates from the National Weather Service (NWS) winter storm report, subset to lake-effect snow event type, covering 1997–2024. For each lake-effect snow event, this data provides the impacted county, event start and end datetimes at an hourly resolution, as well as relevant storm narratives. The complementary reanalysis-derived data is sourced from European Centre for Medium-Range Weather Forecasts (ECMWF) Reanalysis 5 (ERA5) and High-Resolution Rapid Refresh (HRRR) gridded data. For both gridded datasets, the maximum total snowfall (in units mm) was extracted, constrained by the county and datetimes specified by the observational report. ERA5 data covers the entire observational period (1997–2024), whereas HRRR data is only available from November 2016 – December 2024. Three CSV files are provided here: (1) the observational lake-effect snow event report, (2) ERA5 maximum snowfall detections for each event, and (3) HRRR maximum snowfall detections for each event. Relevant data from the observational files, such as impacted state and county, event datetimes, and event IDs, were included for convenience. Users can inspect and visualize the data using tools such as Microsoft Excel and Python pandas/matplotlib packages. This dataset may support a variety of applications, including climatological analyses of lake-effect snowfall, evaluation of snowfall representation in atmospheric datasets and numerical weather prediction models, and the development of machine learning approaches for detecting or predicting lake-effect snowfall events.

EARTH SCIENCE > ATMOSPHERE > PRECIPITATION > SOLID↗

Interpretation of far infra-red emission from interstellar grains

Application of the Kramers-Kronig relations to grains in the interstellar medium. It is found that the recent UV, visual, and infrared extinction curves provide marginal evidence against silicates as the major cause of this extinction. In the far infrared, grains contribute little to the extinction, but can be observed in thermal emission. It is shown that the far infrared emission from grains in a given bandwidth sets a lower limit to the grain temperature. From observed intensities from the galactic plane at 100 microns and from Orion at 350 microns, minimum grain temperatures are found which are larger than the observed brightness temperature. The emission and extinction data can be used together to constrain the allowable range of parameters for the grains.

Caroff, L. J.↗

Supersonic-nitrogen flow-field measurements with the resonant Doppler velocimeter

The application of the resonant Doppler velocimeter (RDV) for obtaining the mean velocity, temperature, and pressure measurements and flow-field visualization in a supersonic free nitrogen jet is reported. This method utilizes laser-induced fluorescence to determine the spectral absorption of an atomic or molecular species seeded into the flow. A narrow linewidth tunable laser is directed into the flow and the total fluorescence from any point is obtained as the laser is tuned. The velocity of the flow is obtained from the Doppler shifted absorption frequency, and the temperature and pressure of the gas are determined from line broadening measurements. Results are presented for the use of this technique to determine the velocity, temperature, and pressure of the flow of sodium atoms seeded into a supersonic nitrogen jet. It is concluded that the visible signal is sufficiently intense for spatially resolved flow visualization purposes.

Cheng, S.↗

Wavelet-Based Interpolation and Representation of Non-Uniformly Sampled Spacecraft Mission Data

A well-documented problem in the analysis of data collected by spacecraft instruments is the need for an accurate, efficient representation of the data set. The data may suffer from several problems, including additive noise, data dropouts, an irregularly-spaced sampling grid, and time-delayed sampling. These data irregularities render most traditional signal processing techniques unusable, and thus the data must be interpolated onto an even grid before scientific analysis techniques can be applied. In addition, the extremely large volume of data collected by scientific instrumentation presents many challenging problems in the area of compression, visualization, and analysis. Therefore, a representation of the data is needed which provides a structure which is conducive to these applications. Wavelet representations of data have already been shown to possess excellent characteristics for compression, data analysis, and imaging. The main goal of this project is to develop a new adaptive filtering algorithm for image restoration and compression. The algorithm should have low computational complexity and a fast convergence rate. This will make the algorithm suitable for real-time applications. The algorithm should be able to remove additive noise and reconstruct lost data samples from images.

Bose, Tamal↗

Concept of Operations for Commercial and Business Aircraft Synthetic Vision Systems

A concept of operations (CONOPS) for the Commercial and Business (CaB) aircraft synthetic vision systems (SVS) is described. The CaB SVS is expected to provide increased safety and operational benefits in normal and low visibility conditions. Providing operational benefits will promote SVS implementation in the Net, improve aviation safety, and assist in meeting the national aviation safety goal. SVS will enhance safety and enable consistent gate-to-gate aircraft operations in normal and low visibility conditions. The goal for developing SVS is to support operational minima as low as Category 3b in a variety of environments. For departure and ground operations, the SVS goal is to enable operations with a runway visual range of 300 feet. The system is an integrated display concept that provides a virtual visual environment. The SVS virtual visual environment is composed of three components: an enhanced intuitive view of the flight environment, hazard and obstacle defection and display, and precision navigation guidance. The virtual visual environment will support enhanced operations procedures during all phases of flight - ground operations, departure, en route, and arrival. The applications selected for emphasis in this document include low visibility departures and arrivals including parallel runway operations, and low visibility airport surface operations. These particular applications were selected because of significant potential benefits afforded by SVS.

Williams Daniel M.↗

Information technology aided exploration of system design spaces

We report on a practical application of information technology techniques to aid system engineers effectively explore large design spaces. We make use of heuristic search, visualization and data mining, the combination of which we have implemented wtihin a risk management tool in use at JPL and NASA.

requirements prioritization↗

A Case Study: Using Delmia at Kennedy Space Center to Support NASA's Constellation Program

The presentation examines the use of Delmia (Digital Enterprise Lean Manufacturing Interactive Application) for digital simulation in NASA's Constellation Program. Topics include an overview of the Kennedy Space Center (KSC) Design Visualization Group tasks, NASA's Constellation Program, Ares 1 ground processing preliminary design review, and challenges and how Delmia is used at KSC, Challenges include dealing with large data sets, creating and maintaining KSC's infrastructure, gathering customer requirements and meeting objectives, creating life-like simulations, and providing quick turn-around on varied products,

Kickbusch, Tracey↗

Persistence Mapping Using EUV Solar Imager Data

We describe a simple image processing technique that is useful for the visualization and depiction of gradually evolving or intermittent structures in solar physics extreme-ultraviolet imagery. The technique is an application of image segmentation, which we call "Persistence Mapping," to isolate extreme values in a data set, and is particularly useful for the problem of capturing phenomena that are evolving in both space and time. While integration or "time-lapse" imaging uses the full sample (of size N ), Persistence Mapping rejects (N - 1)/N of the data set and identifies the most relevant 1/N values using the following rule: if a pixel reaches an extreme value, it retains that value until that value is exceeded. The simplest examples isolate minima and maxima, but any quantile or statistic can be used. This paper demonstrates how the technique has been used to extract the dynamics in long-term evolution of comet tails, erupting material, and EUV dimming regions.

Thompson, B. J.↗

NASA GES DISC Giovanni: Current and Future

Giovanni (Geospatial Interactive Online Visualization and Analysis Infrastructure), developed by the NASA Goddard Earth Sciences Data and Information Services Center (GES DISC), has established a reputation among NASA users for easy access, analysis, and visualization of NASA Earth science data. Currently, Giovanni supports over 1900 variables in eight disciplinary areas. Like any other enterprise application, Giovanni faces big data challenges, such as servicing increasingly large data volumes and more complex data types, while at the same time addressing the demands of a more diverse user community, e.g., placing requests for long-term time series from multiple spatially and temporally dense data records. I will present how Giovanni has been evolving from an on-premises, monolithic software application towards a cloud-enabled implementation to address these challenges.

Analytics↗

NASA GIBS and Worldview: Bringing 20 Years of Terra Data into View

For nearly 10 years, the NASA Global Imagery Browse Services (GIBS) and Worldview interactive mapping site have provided users full resolution visualizations of Terra land, cryosphere, ocean, and atmosphere science parameters available within hours of acquisition. Over that time, GIBS and Worldview have expanded their Terra visualization suite to include even more parameters covering the entire mission of science data. Users can now view daily visualizations of nearly 50 near-real time and over 125 science quality science parameters from Terra instruments. These visualizations provide a unique capability for a broad user base to interact and discover the wealth of information sense by instruments on the Terra platform. By viewing Terra-based visualizations in a single location, users can correlate retrievals across instruments. Additionally, GIBS and Worldview include visualizations from many other platforms, allowing for an even greater data discovery capability.The GIBS and Worldview teams continue to work with Terra instrument science teams to add more visualized layers, as well as supporting visualization updates as the data is continually improved. Additionally, the GIBS interfaces and Worldview site are actively working on improved visualization functionality, including vector- and granule/swath-based products, to better address the expanding needs of its user community. This presentation will focus on an overview of existing and future visualization products and capabilities that have supported, and will support, a broad use of Terra data in science, media, and application communities.

Cechini, Matthew↗

Integrating Multi-agency Data Products in a Cloud-based Platform for Streamlined Discovery, Visualization, and Use

Earth science data users almost always have an interest in utilizing geospatial data from multiple agencies. As computing capability and cloud-based infrastructures accelerate the pace at which scientific research can be done, there is a growing need to enable search, discovery, and use of multi-agency geospatial observations relevant for a common use case - without undergoing the search and discovery process in a less efficient, disparate path with each agency. NASA’s Earth Observing System Data and Information System (EOSDIS) and NOAA’s National Environmental Satellite, Data and Information Service (NESDIS) both support a wide range of Earth science disciplines’ research, operations, and applications activities. Presently, however, there are few examples of data discovery frameworks supporting an inquiry of both NASA’s and NOAA’s extensive archives of Earth observations that are equally suitable for a particular science scenario, regardless of the agency that “owns” the data. NASA and NOAA are collaborating on a data expedition platform for exploring fire weather using data products from both agencies. Users will be able to search, discover, and visualize NASA and NOAA products in one interface. Each agency will curate metadata for its respective datasets, providing for a rich search experience. The collaboration will pilot a shared search interface into these metadata datastores. Data products will be stored in the cloud in cloud-optimized format(s). These formats will allow for optimized data access and visualization to support the “data expedition”. Avenues for further development and application of this cloud-based, multi-agency data provisioning platform will also be discussed.

cloud-based technology↗

Scalable Comparative Visualization of Ensembles of Call Graphs

Optimizing the performance of large-scale parallel codes is critical for efficient utilization of computing resources. Code developers often explore various execution parameters, such as hardware configurations, system software choices, and application parameters, and are interested in detecting and understanding bottlenecks in different executions. They often collect hierarchical performance profiles represented as call graphs, which combine performance metrics with their execution contexts. The crucial task of exploring multiple call graphs together is tedious and challenging because of the many structural differences in the execution contexts and significant variability in the collected performance metrics (e.g., execution runtime). In this paper, we present Ensemble CallFlow to support the exploration of ensembles of call graphs using new types of visualizations, analysis, graph operations, and features. We introduce ensemble-Sankey , a new visual design that combines the strengths of resource-flow (Sankey) and box-plot visualization techniques. Whereas the resource-flow visualization can easily and intuitively describe the graphical nature of the call graph, the box plots overlaid on the nodes of Sankey convey the performance variability within the ensemble. Our interactive visual interface provides linked views to help explore ensembles of call graphs, e.g., by facilitating the analysis of structural differences, and identifying similar or distinct call graphs. Finally, we demonstrate the effectiveness and usefulness of our design through case studies on large-scale parallel codes.

97 MATHEMATICS AND COMPUTING↗

Application of holography to the determination of flow conditions within the rotating blade row of a compressor

The double-pulse, double-exposure holography technique was applied to visualize the flow field within a transonic compressor rotor with a tip speed of 1800 ft/sec. The principal objective was to visualize the shock waves created in the flow field which was supersonic relative to the rotating blade row. The upstream rotor blade bow shocks and, at high speed, the outermost portion of the leading edge passage shock were successfully observed in the holograms. Techniques were devised for locating these shocks in three dimensions, and the results were compared with theoretical predictions. Density changes between the two pulses due to motion of the shocks were large and, therefore, it was not possible to resolve the fringe systems in detail for the 100% speed conditions. However, gross features of the shocks were easily observed, and the upstream shocks were well displayed. In all cases the shock angles were somewhat larger than predicted by theory, and a distinct increase in angle near the outer wall was observed, which may be attributed to endwall boundary layer effects. The location and orientation of the observed leading edge passage shocks were in good agreement with static pressure contours obtained from measurements in the outer casing over the rotor tip.

Hantman, R. G.↗

Application of multipoint measurements for flow characterization

Some of the possibilities for inferring the structure of complicated flows from simultaneous measurements at many points are reviewed. Conditional sampling, pseudoflow visualization, stochastic estimation, and the proper orthogonal decomposition are briefly reviewed and illustrated by example. Resolution criteria for multipoint spatial arrays are proposed that minimize the possibilities for misinterpreting the data.

Glauser, Mark N.↗

Application of Background Oriented Schlieren for Altitude Testing of Rocket Engines

A series of experiments was performed to determine the feasibility of using the Background Oriented Schlieren, BOS, flow visualization technique to image a simulated, small, rocket engine, plume under altitude test conditions. Testing was performed at the NASA Glenn Research Centers Altitude Combustion Stand, ACS, using nitrogen as the exhaust gas simulant. Due to limited optical access to the facility test capsule, all of the hardware required to conduct the BOS were located inside the vacuum chamber. During the test series 26 runs were performed using two different nozzle configurations with pressures in the test capsule around 0.3 psia. No problems were encountered during the test series resulting from the optical hardware being located in the test capsule and acceptable resolution images were captured. The test campaign demonstrated the ability of using the BOS technique for small, rocket engine, plume flow visualization during altitude testing.

Background Oriented Schlieren↗