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All sourcesNASA NTRSDOE OSTI
DOE OSTI2016

Effective Long-term Monitoring Strategies by Integrating Reactive Transport Models with In situ Geochemical Measurements - 16212

Long-term monitoring of contaminant transport in groundwater is expected to account for a large fraction of future life-cycle cleanup costs at the DOE sites. The Attenuation-Based Remedies in the Subsurface Applied Field Research Initiative (ABRS AFRI) is developing an innovative approach for cost-effective in situ long-term monitoring. The approach is based on strategically adding the measurements of controlling variables (such as pH, redox potential, electrical conductivity, and groundwater level), which control the plume mobility and its spatial and temporal distribution. In situ measurements of these variables - supplemented with a reduced number of standard periodic groundwater samples - are expected to lead to more cost-effective monitoring, and can also serve as an early warning system for detecting unexpected plume migration. The objective of this study is to support the development of such a long-term monitoring approach through the application of advanced computational methods, including (1) statistical data mining and analysis, and (2) three-dimensional flow and reactive chemical transport modeling. We have performed the statistical data analysis of historical and current monitoring data at the Savannah River Site (SRS) F-Area to quantify the correlations between the controlling variables and radioactive contaminant concentrations. In parallel, we have used 3D modeling of flow and contaminant transport to provide the prediction of the contaminant plume evolution. The results of both data analysis and modeling confirmed that the correlations between controlling variables and contaminant concentrations are significant. Modeling results also suggest that the correlation parameters will change in the future, which is important to assess the long-term efficacy of the proposed monitoring approach. (authors)

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗
DOE OSTI2020

Investing in STEM Benefits Community, Company, and Industry - 20243

Like many organizations and groups, the Department of Energy Environmental Management program and the nuclear industry are facing an aging employee population and record numbers of employee retirements. This 'silver tsunami' of retirees means the industry as a whole is recruiting graduates at a fast pace. So, how do we ensure the nuclear industry has a robust pipeline of graduates with the necessary background? Fluor Idaho's investment in science, technology, engineering, and mathematics (STEM) education programs helps promote the next generation of technical professionals, benefiting both the company and the industry. Through community outreach initiatives and student mentoring programs, Fluor Idaho promotes kids' interest in STEM. The programs are designed to spark STEM interest in grade school and then foster and grow that interest through high school and higher education. After igniting student excitement about STEM topics in school, Fluor Idaho focuses on providing work-specific opportunities including mentoring and intern programs. These programs give students a better look at real-world job opportunities while still stimulating their interest in STEM. These programs ultimately provide career opportunities for the students and a pipeline of workers. Fluor Idaho's strategy for its summer interns has been to place students in a wide variety of projects - from the commissioning of a first-of-a-kind nuclear processing facility, to operating nuclear waste management facilities, to developing computer programs and applications - and give them responsibilities that make them feel like valued contributors. This approach has created a positive and rewarding summer-intern program experience for the students. Fluor Idaho's investment in its future today is reducing the knowledge gap - or cliff - that many contractors in the nuclear industry are facing. It's a worthwhile investment that is readily visible within its many cleanup projects. The next generation of technical professionals is making an impact now - benefiting both the company and the nuclear industry. This paper will review Fluor Idaho's programs, including STEM community outreach and education and mentoring programs. It will also present statistics about the reach of those programs and their successes. (authors)

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗
DOE OSTI2022

Advancing Nuclear Energy to Support Economy-wide Net-zero Solutions: Challenges and Opportunities

Governments and private industry around the world have established aggressive goals to achieve net-zero emissions for the power, industrial, and transportation sectors by 2050. These aggressive goals demand immediate action if we are to be successful, and they require us to think more holistically about our clean energy options. Programs within the U.S. Department of Energy (DOE) are addressing these holistic solutions. Traditionally, electricity generation and management and meeting energy demands for industry and transportation are considered independently. As we seek to achieve net-zero, we need to reassess energy demands. When we consider overall energy use, only one-third is in the form of electricity. Additional energy demands are in the form of heat or steam for industrial processes, as well as transportation. These sectors are much harder to abate, and electrification may not be the best option. Reducing environmental emissions at an affordable cost, while maintaining grid reliability and resilience, will require us to use all of the clean energy resources that we have available. That means coordinating the use of nuclear, renewables, and fossil fuels with carbon capture to meet growing demands for electricity, industrial applications, and mobility. The DOE Office of Nuclear Energy (DOE-NE) program on Integrated Energy Systems (IES) is led by researchers at Idaho National Laboratory (INL) and work is conducted in partnership with an array of other DOE laboratories, industry, and academia. The primary focus of IES research is to assess the technical and economic potential of IES to enhance the flexibility and utilization of nuclear reactors working alongside renewable generators to meet an array of energy demands—thereby maximizing the utilization of clean energy resources across all energy sectors. Various energy applications and product streams beyond electricity are being evaluated, ranging from generation of potable water to production of hydrogen, fertilizers, synthetic fuels, and chemicals. The DOE-NE program additionally partners with the Hydrogen and Fuel Cell Technologies Office under the DOE Office of Energy Efficiency and Renewable Energy to jointly fund the development of analysis tools, technologies, and nuclear-integrated hydrogen demonstration projects. This presentation highlights the wide array of R&D being conducted across multiple DOE-funded programs to develop and deploy nuclear-based IES that will be key to achieving our net-zero goals. By working with key collaborators in the nuclear industry, analytical studies are now becoming a reality in demonstration projects. The presentation specifically focuses on motivations for the paradigm shift in how nuclear energy is deployed and used, opportunities for nuclear energy to support an array of non-electric application, integration options, computational tools and experimental systems to support evaluation and to accelerate deployment, and industry partnerships.

22 GENERAL STUDIES OF NUCLEAR REACTORS↗
DOE OSTI2024

A Simulation Study of Quantum Clock Synchronization Using Teleportation

An important requirement in implementing distributed computing and sensing application is the synchronization of clocks at various locations. The Internet relies on the Network Time Protocol (NTP), which synchronizes clocks with accuracy in the order of milliseconds. More recently an ensemble of atomic clocks is used for navigation based on GPS. These clocks are highly accurate and provide time with very low uncertainty. Even so, many physics experiments such as distributed LIGO-based systems may require more accurate clock synchronization that is achievable using quantum entanglement. This requires the deployment of a network of quantum clocks synchronized by exploiting entangled atomic clock qubits. In this paper, we carry out a simulation study of synchronizing a network of quantum clocks interconnected by a fiber plant that supports the ESnet; the latter is used to support the classical communication needed for teleportation. We consider an existing protocol for synchro-nizing the atomic clock qubits that relies on the GHZ states. To assess the performance of the protocol we developed a discrete-event simulation of the network using IBM Qiskit framework for underlying quantum gate operations and measurements. The simulation results shed light on the resources required in terms of the number entangled qubits and the time needed to achieve the synchronization of different number of nodes in ESnet.

Kiran, Mariam↗
DOE OSTI2026

Exact and Fixed-Point Grover Search with Qudits

Grover's algorithm provides a quadratic speedup for searching unstructured databases and is traditionally implemented with qubits in Hilbert spaces whose dimensions are powers of two. With the advent of quantum platforms utilizing qudits---quantum systems with more than two levels---there is a need to generalize Grover search to these architectures, including heterogeneous systems with qudits of varying dimensions. Here, we present a unified framework for qudit-based Grover search, detailing the construction of oracles and diffusion operators with and without ancilla qubits and generalizing deterministic and fixed-point search variants that ensure exact or bounded success probabilities. We analyze phase-matching techniques and provide explicit circuit decompositions suitable for diverse hardware platforms. We also compare the corresponding trajectories on the Bloch sphere to provide an intuitive visualization of how the different phase choices amplify the target state. These results facilitate flexible, hardware-oriented protocols for implementing Grover search on qudit processors, potentially reducing circuit depth and enhancing success probabilities, thereby offering a practical toolkit for quantum computation and sensing applications leveraging multilevel quantum systems.

Roy, Tanay [Fermilab] (ORCID:000000019442862X)↗
DOE OSTI2023

Quantum Application Specifications and Benchmarks

This software describes computational tasks for quantum computers that are derived from LANL basic science research applications such as the modeling of materials, chemicals and compounds at atomic scales. The computations focus on quantum simulation tasks, such as quantum dynamics, thermal state preparation and ground state estimation. The primary function of the software is to develop estimates of the requirements for large-scale fault-tolerant quantum computers to solve these scientific computations. The secondary focus of the software are codes for assessing the limitations of conducting quantum computations on classical computers.

Coffrin, Carleton↗
DOE OSTI2026

Nuclear Data Adjustment for Nonlinear Applications in the OECD/NEA WPNCS SG14 Benchmark—A Bayesian Inverse UQ-Based Approach for Data Assimilation

The Organisation for Economic Co-operation and Development Working Party on Nuclear Criticality Safety has proposed a benchmark exercise to assess the performance of current nuclear data adjustment techniques applied to nonlinear applications and experiments with low correlation to applications. This work introduces Bayesian inverse uncertainty quantification (IUQ) employing scientific machine learning surrogate models as a method for nuclear data adjustments in this benchmark, and compares IUQ to the more traditional methods of generalized linear least squares (GLLS) and Monte Carlo Bayes (MOCABA). Posterior predictions from IUQ showed agreement with GLLS and MOCABA for linear applications. Here, when comparing GLLS, MOCABA, and IUQ posterior predictions to computed model responses using adjusted parameters, we observe that the GLLS predictions failed to replicate the computed response distributions for nonlinear applications, while MOCABA showed near agreement, and IUQ used the computed model responses directly. We also discuss observations on why experiments with low correlation to applications can be informative to nuclear data adjustments and identify some properties useful in selecting experiments for inclusion in nuclear data adjustment. Performance in this benchmark indicates potential for Bayesian IUQ in nuclear data adjustments.

Bayesian calibration↗
DOE OSTI2016

SU-F-E-13: Design and Fabrication of Gynacological Brachytherapy Shielding & Non Shielding Applicators Using Indigenously Developed 3D Printing Machine

Purpose: In this innovative work we have developed Gynecological Brachytherapy shielding & Non Shielding Applicators and compared with the commercially available applicators by using the indigenously developed 3D Printing machine. Methods: We have successfully indigenously developed the 3D printing machine. Which contain the 3 dimensional motion platform, Heater unit, base plate, ect… To fabricate the Gynecological Brachytherapy shielding & non shielding applicators the 3D design were developed in the computer as virtual design. This virtual design is made in a CAD computer file using a 3D modeling program. Separate programme for the shielding & non shielding applicators. We have also provided the extra catheter insert provision in the applicator for the multiple catheter. The DICOM file of the applicator were then converted to stereo Lithography file for the 3D printer. The shielding & Non Shielding Applicators were printed on a indigenously developed 3D printer material. The same dimensions were used to develop the applicators in the acrylic material also for the comparative study. A CT scan was performed to establish an infill-density calibration curve as well as characterize the quality of the print such as uniformity and the infill pattern. To commission the process, basic CT and dose properties of the printing materials were measured in photon beams and compared against water and soft tissue. Applicator were then scanned to confirm the placement of multiple catheter position. Finally dose distributions with rescanned CTs were compared with those computer-generated applicators. Results: The doses measured from the ion Chamber and X-Omat film test were within 2%. The shielded applicator reduce the rectal dose comparatively with the non shielded applicator. Conclusion: As of submission 3 unique cylinders have been designed, printed, and tested dosimetrically. A standardizable workflow for commissioning custom 3D printed applicators was codified and will be reported.

60 APPLIED LIFE SCIENCES↗
DOE OSTI2020

Locality-Aware Scheduling for Scalable Heterogeneous Environments

Heterogeneous computing promise boost performance of scientific applications by allowing massively parallel execution of computational tasks. However, manually managing extremely heterogeneous, multi-device systems is complicated and may result in sub-optimal performance. Specifically, data management is an extremely challenging problem on multi-device systems. In this work, we introduce two locality-aware schedulers for the Minos Computing Library (MCL), an asynchronous, task-based programming model and runtime for extremely heterogeneous systems. The first scheduler implements a pure locality-aware algorithm to maximize data reuse, though it might incur in ”hot-spots” that limit system utilization. The second scheduler mitigates this drawback by dynamically targeting between locality-awareness and system utilization based on the current workload and available computing devices. Our results show that locality-awareness greatly benefit applications that exhibit data reuse, providing up to 6.9x and 7.9x over the original MCL scheduler and equivalent OpenCL implementations, respectively. Moreover, our schedulers introduce negligible overhead compared with the original MCL scheduler and achieve similar performance for applications that don’t benefit from data locality.

Architecture, co-design, Task-based programming mo↗
DOE OSTI2024

Studying CPU and memory utilization of applications on Fujitsu A64FX and Nvidia Grace Superchip

ARM-based manycore CPU architectures are well-positioned to provide the rising memory throughput requirements of modern data intensive scientific applications in High Performance Computing (HPC). The Fujitsu A64FX CPU platform is based on the ARM v8.2A architecture, and is the processor of the flagship Japanese supercomputer - "Fugaku", which was previously ranked as the #1 supercomputer in the world according to the Top500 list. The Nvidia Grace superchip features 144 Neoverse V2 cores based on the ARMv9 architecture with 4x128b SVE2, providing exceptional computational power. The chip supports up to 480GB of memory, making it ideal for AI, machine learning, and scientific computing workloads. In this paper, we conduct a thorough performance exploration of a variety of parallel bandwidth-sensitive benchmarks and applications compiled with the native Fujitsu compiler on a Fugaku A64FX compute node and ARM (LLVM) Compiler on an NVIDIA Grace superchip compute node, engaging all the computational cores per cluster using OpenMP multithreading (assuming the cores can drive the available bandwidth). Our ultimate goals are to study the resource utilization of scientific applications and benchmarks on A64FX and Grace superchip, considering graph application scenarios ( GAP Benchmark suite) and eleven appli- cation proxies from the Rodinia heterogeneous benchmark suite (considering domains such as Data Mining, Bioinformatics, Fluid Dynamics, Pattern Recognition, etc.). Through exhaustive performance monitoring, we quantify the resource utilization of diverse OpenMP-based HPC applications on both the Fujitsu A64FX and the Nvidia Grace Superchip platforms.

benchmarking, Performance Analysis, High performan↗
DOE OSTI2016

Particle Resuspension Simulation Capability to Substantiate DOE-HDBK-3010 Data

The data provided in the U.S. Department of Energy (DOE) Handbook, DOE-HDBK-3010 provides data such as airborne release fractions and respirable fractions which are widely used in safety analysis and facility design. These fractions are often used as conservative bounds, despite the fact that the original data may have been obtained at a different scale or in a different configuration than the end application. The use of computational techniques to augment these data can be used to extend laboratory-scale data applicability to facility-scale decisions. Our prior report described an approach using Sandia National Laboratories (SNL) computer codes to simulate particle releases from various accident scenarios. The relevant physics controlling the particle resuspension phenomena can be highly problem-dependent. They can include surface tension for particles or surfaces with liquid present, van der Waals forces for small particles, electrostatic forces for charged particles, and mechanical interactions with surface features larger than the particles sizes. The complexity of this phenomenon and recent developments have been described in a recent review by Henry and Minier. (authors)

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗
DOE OSTI2019

Computational Strategies for Scalable Genomics Analysis

The revolution in next-generation DNA sequencing technologies is leading to explosive data growth in genomics, posing a significant challenge to the computing infrastructure and software algorithms for genomics analysis. Various big data technologies have been explored to scale up/out current bioinformatics solutions to mine the big genomics data. In this review, we survey some of these exciting developments in the applications of parallel distributed computing and special hardware to genomics. We comment on the pros and cons of each strategy in the context of ease of development, robustness, scalability, and efficiency. Although this review is written for an audience from the genomics and bioinformatics fields, it may also be informative for the audience of computer science with interests in genomics applications.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2024

Scrutinizing Variables for Checkpoint Using Automatic Differentiation

Checkpoint/Restart (C/R) saves the running state of the programs periodically, which consumes considerable time and system resources. We observe that not every piece of data is involved in the computation in typical HPC applications; such unused data should be excluded from checkpointing for better storage and compute efficiency. We propose a systematic approach that leverages automatic differentiation (AD) to scrutinize every element within variables (e.g., arrays) necessary for checkpointing. This allows us to identify critical and uncritical elements and eliminate uncritical elements from checkpointing. Specifically, we inspect every single element within a variable necessary for checkpointing with an AD tool to determine whether the element has an impact on the application output or not. We validate our approach with all benchmarks from the NPB suite. We visualize the distribution of critical and uncritical elements within a variable with respect to its binary impact (yes or no) on the application output.

Huang, Xin [Kobe University]↗
DOE OSTI2021

A Ranked-Orbital Approach to Select Active Spaces for High-Throughput Multireference Computation

The past decade has seen a great increase in the application of high-throughput computation to a variety of important problems in chemistry. However, one area which has been resistant to the high-throughput approach is multireference wave function methods, in large part due to the technicalities of setting up these calculations and in particular the not always intuitive challenge of active space selection. As we look toward a future of applying high-throughput computation to all areas of chemistry, it is important to prepare these methods for large-scale automation. Here, we propose a ranked-orbital approach to select active spaces with the goal of standardizing multireference methods for high-throughput computation. This method allows for the meaningful comparison of different active space selection schemes and orbital localizations, and we demonstrate the utility of this approach across 1120 multireference calculations for the excitation energies of small molecules. Our results reveal that it is helpful to distinguish the method used to generate orbitals from the method of ranking orbitals in terms of importance for the active space. Additionally, we propose our own orbital ranking scheme that estimates the importance of an orbital for the active space through a pair-interaction framework from orbital energies and features of the Hartree–Fock exchange matrix. Here, we call this new scheme the “approximate pair coefficient” (APC) method and we show that it performs quite well for the test systems presented.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
DOE OSTI2016

Exploring versioned distributed arrays for resilience in scientific applications: Global view resilience

Exascale studies project reliability challenges for future HPC systems. We present the Global View Resilience (GVR) system, a library for portable resilience. GVR begins with a subset of the Global Arrays interface, and adds new capabilities to create versions, name versions, and compute on version data. Applications can focus versioning where and when it is most productive, and customize for each application structure independently. This control is portable, and its embedding in application source makes it natural to express and easy to maintain. The ability to name multiple versions and “partially materialize” them efficiently makes ambitious forward-recovery based on “data slices” across versions or data structures both easy to express and efficient. Using several large applications (OpenMC, preconditioned conjugate gradient (PCG) solver, ddcMD, and Chombo), we evaluate the programming effort to add resilience. The required changes are small (< 2% lines of code (LOC)), localized and machine-independent, and perhaps most important, require no software architecture changes. We also measure the overhead of adding GVR versioning and show that overheads < 2% are generally achieved. This overhead suggests that GVR can be implemented in large-scale codes and support portable error recovery with modest investment and runtime impact. Our results are drawn from both IBM BG/Q and Cray XC30 experiments, demonstrating portability. We also present two case studies of flexible error recovery, illustrating how GVR can be used for multi-version rollback recovery, and several different forward-recovery schemes. GVR’s multi-version enables applications to survive latent errors (silent data corruption) with significant detection latency, and forward recovery can make that recovery extremely efficient. Lastly, our results suggest that GVR is scalable, portable, and efficient. GVR interfaces are flexible, supporting a variety of recovery schemes, and altogether GVR embodies a gentle-slope path to tolerate growing error rates in future extreme-scale systems.

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2017

Scalable Data Management, Analysis, and Visualization (SDAV) Institute (Final Report)

The purpose of the SDAV institute is to provide tools and expertise in scientific data management, analysis, and visualization to application scientists on leadership-class computing facilities. Our goal is to actively work with application teams to assist them in achieving breakthrough science, and to provide technical solutions in the data management, analysis, and visualization regimes that are broadly used by the computational science community. Over the last 5 years members of our institute worked directly with application scientists to assist them by applying the best tools and technologies at our disposal. We also enhanced our tools based on input from scientists on their needs. Many of the applications we have been working with are based on connections with scientists established in previous years. However, we contacted additional scientists though our outreach activities, as well as engaging application teams running on leading DOE computing systems. Our approach is to employ an evolutionary development and deployment process: first considering the application of existing tools, followed by the customization necessary for each particular application, and then the deployment in real frameworks and infrastructures. The institute is organized into three areas, each with area leaders, who keep track of progress, engagement of application scientists, and results. The areas are: (1) Data Management, (2) Data Analysis, and (3) Visualization. This report is organized along these areas. However, often there are multiple technologies from these areas that are applied to a single application need. These are described on a case-by-case basis in the appropriate sections. This final report for the SDAV Institute covers the 5-year period from February 2012 to February 2017. This report covers activities in all SDAV institutions listed next. Laboratories: Argonne National Laboratory (ANL), Lawrence Berkeley National Laboratory (LBNL), Lawrence Livermore National Laboratory (LLNL), Los Alamos National Laboratory (LLNL), Oak Ridge National Laboratory (ORNL), Sandia National Laboratory (SNL). Universities: Georgia Institute of Technology, North Carolina State University, Northwestern University, Ohio State University, Oregon State University, Rutgers University, University of California at Davis, University of Utah. Industry: Kitware.

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2016

Fault Tolerance Assistant (FTA): An Exception Handling Programming Model for MPI Applications

Future high-performance computing systems may face frequent failures with their rapid increase in scale and complexity. Resilience to faults has become a major challenge for large-scale applications running on supercomputers, which demands fault tolerance support for prevalent MPI applications. Among failure scenarios, process failures are one of the most severe issues as they usually lead to termination of applications. However, the widely used MPI implementations do not provide mechanisms for fault tolerance. We propose FTA-MPI (Fault Tolerance Assistant MPI), a programming model that provides support for failure detection, failure notification and recovery. Specifically, FTA-MPI exploits a try/catch model that enables failure localization and transparent recovery of process failures in MPI applications. We demonstrate FTA-MPI with synthetic applications and a molecular dynamics code CoMD, and show that FTA-MPI provides high programmability for users and enables convenient and flexible recovery of process failures.

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2016

A survey on software methods to improve the energy efficiency of parallel computing

Energy consumption is one of the top challenges for achieving the next generation of supercomputing. Codesign of hardware and software is critical for improving energy efficiency (EE) for future large-scale systems. Many architectural power-saving techniques have been developed, and most hardware components are approaching physical limits. Accordingly, parallel computing software, including both applications and systems, should exploit power-saving hardware innovations and manage efficient energy use. In addition, new power-aware parallel computing methods are essential to decrease energy usage further. This article surveys software-based methods that aim to improve EE for parallel computing. It reviews the methods that exploit the characteristics of parallel scientific applications, including load imbalance and mixed precision of floating-point (FP) calculations, to improve EE. In addition, this article summarizes widely used methods to improve power usage at different granularities, such as the whole system and per application. In particular, it describes the most important techniques to measure and to achieve energy-efficient usage of various parallel computing facilities, including processors, memories, and networks. Overall, this article reviews the state-of-the-art of energy-efficient methods for parallel computing to motivate researchers to achieve optimal parallel computing under a power budget constraint.

97 MATHEMATICS AND COMPUTING↗