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At least 1,171 records · Page 65

An Innovative HIV “Mosaic” Vaccine Design Based on Machine Learning

Approximately 37 million people worldwide have the human immunodeficiency virus (HIV). Because of HIV’s incredible diversity — each infected person carries a unique set of viruses — an effective vaccine against HIV needs to stimulate an immune response that can recognize its many variants. Using a machine-learning algorithm and the NIH funded Los Alamos National Laboratory database of hundreds of thousands of HIV sequences gathered from around the globe, Los Alamos scientists were able to design small sets of sequences that in combination provide optimal coverage of HIV’s diversity. The mosaic vaccine is the world’s first computationally-designed vaccine. Through a decade of testing it has continued to show promise, and so currently is being tested in two human efficacy trials to evaluate whether the investigational vaccine regimen can reduce the incidence of HIV infection among 2,600 women in sub-Saharan Africa, and 3,800 men who have sex with men and transgender people in the Americas.

59 BASIC BIOLOGICAL SCIENCES↗

YOLO Test Software v1.4

This is a user manual of the software being developed at Brookhaven National Laboratory to test deep learnings algorithms. (YOLO) You Only Look Once. V1.4 added new features, including Display metric average recall, early termination option and display filename/image.

97 MATHEMATICS AND COMPUTING↗

Group Structure Machine Learning Proposal

Nuclear data is the linchpin underwriting several fundamental capabilities and mission needs at LANL. New techniques such as machine learning can be brought to bear to solve old problems such as multigroup cross-section accuracy. In neutron transport, generating multigroup cross sections is a complex and arcane task, but a crucial one, as accurate solutions require appropriate cross sections. There are two key challenges when generating multigroup cross sections: (1) choosing an accurate weight function, and (2) choosing appropriate energy boundaries. Often, energy boundaries are chosen using “expert judgment” that is not documented and is difficult to replicate. The long-standing Los Alamos 30-group structure has been in use since at least 1969 and is still in use today. Simplistic attempts over the years since to improve on the 30-group structure have been met with limited success. Machine learning algorithms would enable the selection of appropriate, problem-dependent group boundaries without an inordinate investment of scientist time. We will develop workflows and tools to enable these improved group boundary choices, which will reduce uncertainty and increase predictive capability of neutron-transport applications at LANL.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Cognition at the Point of Sensing

Over the last 15 years, compressive sensing techniques have been developed which have the potential to greatly reduce the amount of data collected by systems while preserving the amount of information obtained. A cost of this efficiency is that a computationally-intensive optimization routine must be used to put the sensed data into a form that a person can interpret. At the same time, machine learning techniques have experienced tremendous growth as well. Machines have demonstrated the ability learn how to effectively perform tasks such as detection and classification at speeds much faster than humanly possible. Our goal in this project was to study the feasibility of using compressive sensing systems "at the edge." That is, how can compressive sensing sensors be deployed such that information is created at the remote sensor rather than sending raw data to a central processing location? Studies were performed to analyze whether machine learning could be done on the compressively sensed data in its raw form. If a machine is performing the task, is it possible to do so without putting the data into a human interpretable form? We show that this is possible for some systems, in particular a compressive sensing snapshot imaging spectrometer. Machine learning tasks were demonstrated to be more effective and more robust to noise when the machine learning algorithm worked on data in its raw form. This system is shown to outperform a traditional spectrometer. Techniques for reducing the complexity of the reconstruction routine were also analyzed. Techniques for such as data regularization, deep neural networks, and matrix completion were studied and shown to have benefits over traditional reconstruction techniques. In this project we showed that compressive sensing sensors are indeed feasible at the edge. As always, sensors and algorithms must be carefully tuned to work in the constrained environment. In this project we developed tools and techniques to enable those analyses.

47 OTHER INSTRUMENTATION↗

Applying Machine Learning to the Classification of DC-DC Converters. NA-22 Final Report

Tools are now available that enable measurement electromagnetic radiation (EMR) from active electronics in an item. This radiation may be intended WIFI or cellular network links, for example or unintended such as the switching noise generated by DC-to-DC converters. It would be extremely valuable to have the capability to discriminate between the low-voltage DC-to-DC converters or other digital noise prevalent in most modern electronics, versus the high-voltage DC-to-DC converters used in utility firesets. Previous work performed under a Sandia Laboratory Directed Research and Development (LDRD) project on Charge State Detection using a deep neural network has been continued in this effort. A state-of-the-art supervised machine learning algorithm has not only been extended to discriminate between low and high voltage converters but has been validated in determining a converters make and model.

42 ENGINEERING↗

Feature Detection

Focal Area(s): This proposal aims to develop and evaluate statistical models and machine learning algorithms for detecting and tracking features in spatiotemporal remotely sensed data with uncertainty quantification. We focus a particular application on the detection of sea ice leads and ridges in the Arctic and use these key sea ice features for model calibration and to gain insight into the physics of sea ice thermodynamics and deformation.

54 ENVIRONMENTAL SCIENCES↗

Constraints on Neutrino Oscillation Parameters from Neutrinos and Antineutrinos with Machine Learning

NOvA is a two detector, long baseline neutrino oscillation experiment measuring the oscillations of muon neutrinos from the \numi neutrino beam over a baseline of \SI{810}{km}. The experiment uses four oscillation channels, $\numu \rightarrow \numu$, $\numubar \rightarrow \numubar$, $\numu \rightarrow \nue$, and $\numubar \rightarrow \nuebar$, with a peak neutrino energy of \SI{1.8}{GeV}. This dissertation describes the analysis of these channels using a dataset of $13.6\times10^{20}$ protons on target neutrino beam mode and $12.5\times10^{20}$ protons on target antineutrino beam mode. The analysis makes use of improvements in the treatment of systematic uncertainties and machine learning techniques to reconstruct neutrino interactions. A technique for decorrelating systematic errors using principle component analysis was utilized to reduce and optimize neutrino cross section and beam related uncertainties. The improved machine learning algorithms make use of convolutional ne ural net works for neutrino event classification, particle classification, and instance segmentation. The selection of neutrino signal events utilizing the neutrino event classifier shows an efficiency of 63\% for the selection of electron neutrinos in neutrino beam mode and 75\% for electron antineutrinos in antineutrino beam mode. Using this algorithm, 82 appearing electron neutrino candidates and 33 appearing electron antineutrino candidates were observed with expected backgrounds of 26.8 and 14.0 respectively. In addition, 211 surviving muon neutrino candidates and 105 muon antineutrino candidates were identified with a purity of more than 96\% using the same neutrino event classifier. Fitting these data to the three flavor neutrino oscillation model, using constraints on \thetaonetwo, \thetaonethree, and \dmsqonetwo from solar and reactor neutrino experiments, the oscillation parameters are measured to be $\sintwothree = 0.57^{+0.04}_{-0.03}$, $\dmsqthreetwo = \SI[parse-numbers= false]{+ 2.41\pm0.07 \times 10^{-3}}{eV^2}$, and $\dcp=0.82^{+0.27}_{-0.87}\pi$ with a preference for the normal neutrino mass hierarchy. Leading systematic uncertainties for these measurements come from detector calibration and neutrino interaction models.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Boundary Layer Climatology at ARM Southern Great Plains

Operational since 1992, the Atmospheric Radiation Measurement (ARM) southern great plains (SGP) site at Oklahoma, USA has become a reference research site for meteorological studies. Due to an open data policy the ARM data are used by researchers all over the world. In this report, we review the long-term climatology of the atmospheric boundary layer, SGP instrumentations, the site and some site-specific atmospheric conditions which potentially effect wind turbines within the region. As the atmospheric boundary layer is bounded and influenced by the surface, observations of surface radiation components and heat fluxes are crucial in understanding land-atmosphere interactions. The entrainment of air, updrafts, downdrafts and boundary layer height characteristics is needed for understanding the structure and growth of the atmospheric boundary layer. Therefore, measurements from both surface in-situ and remote sensing observations at SGP provide an overall climatology and their interactions from surface up to the boundary layer. Measurements from a 60 m meteorological tower, surface flux stations, disdrometers, soil temperature and moisture flux plates, coherent Doppler lidar, Raman lidar, radiosondes, and satellite data at SGP central facility were analyzed. All the measurements were generally within a few square kilometers of each other at the central facility. This report focuses on data from January 2010 to June 2020 at SGP central facility. The various sections describe the ARM SGP site and surrounding wind turbines; in-situ and remote sensing instrumentation used in the report; provides mathematical equations to analyze fluxes, turbulence and other boundary layer parameters; a climatological analysis of surface winds, fluxes and thermodynamic parameters for several years; an analysis of observed winds in the framework of Monin-Obukhov Similarity Theory; an analysis of the boundary layer winds and direction from a Doppler lidar; multi-year turbulence estimates through the boundary layer from a Doppler lidar; atmospheric boundary layer water vapor and relative humidity profiles from Raman lidar; cloud base height and boundary layer height from multiple sensors and satellite data; and finally site specific atmospheric conditions, such as nocturnal low-level jets. Diurnal, seasonal and yearly variations of surface, sub-surface and boundary layer quantities, such as wind speed, direction, temperature, atmospheric stability, soil temperature, and various atmospheric fluxes at SGP showed distinct trends useful for focused modeling studies. The applicability of surface similarity theory on ARM SGP data is also evaluated, which showed northerly flows are aligned with MO theory estimates compared to southerly flows. Boundary layer winds and direction profiles for several years from a Doppler lidar shows a consistent presence of a nocturnal low-level jet and predominant southerly wind directions through the boundary layer at SGP. The inter-annual variability at SGP is low (<3.5%), with a mean annual wind speed of approximately 7 m s -1 at 100 m above ground level. Boundary layer turbulence and moisture transport from Doppler and Raman lidars are evaluated, which provides evidence of increased water vapor mass flux into the great plains during nocturnal low-level jets. The moisture flux from nocturnal low-level jets is observed to be maximum during summer periods. A novel machine learning algorithm is implemented to accurately estimate the planetary boundary layer height, providing further insights into growth and destruction of the convective boundary layer height during various seasons and land-atmosphere conditions. The high frequency of low-level clouds during winter, spring and fall seasons is validated using the multi-sensor array and satellite estimates of cloud top height. Satellite vegetative fraction data provides insight into seasonal surface roughness and vegetation variability around SGP site.

54 ENVIRONMENTAL SCIENCES↗

CIS Project 22359, Final Technical Report. Discretized Posterior Approximation in High Dimensions

Our primary aim in this work is to understand how to efficiently obtain reliable uncertainty quantification in automatic learning algorithms with limited training datasets. Standard approaches rely on cross-validation to tune hyper parameters. Unfortunately, when our datasets are too small, holdout datasets become unreliable—albeit unbiased—measures of prediction quality due to the lack of adequate sample size. We should not place confidence in holdout estimators under conditions wherein the sample variance is both large and unknown. More poigniantly, our training experiments on limited data (Duersch and Catanach, 2021) show that even if we could improve estimator quality under these conditions, the typical training trajectory may never even encounter generalizable models.

97 MATHEMATICS AND COMPUTING↗

Deep Learning Based Approach to Integrate MyShake's Trigger Data with ShakeAlert for Faster and Robust EEW Alerts

Earthquake Early Warning (EEW) systems depend on the dense seismic network to make fast and accurate earthquake detections to issue useful early alerts. The recent development and implementation of the ShakeAlert system is relying on the west coast seismic network to detect and estimate the earthquake parameters in real-time. While working on making improvements on the current system, one potential approach is to include more seismic recordings from various sources, such as the low-cost smartphone seismic network, such as the MyShake network, or the Google Android smartphones, since these smartphone seismic networks have much more portable stations (phones) to potentially provide useful data to the system. This report summarizes the initial exploration of using a deep learning approach to combine the data from both traditional seismic stations and the smartphone data in California. Due to the heterogeneity nature of the data, we aggregate data from the phones (using simulation data), as well as that from traditional seismic stations to grid cells. By generating real-time triggering ratio grid cell maps, the designed deep learning algorithm can process the data from multiple sources and detect the earthquake faster than only using that from a traditional seismic network.

58 GEOSCIENCES↗

Power System Waveform Classification Using Time-Frequency and CNN

Many modern reclosers and circuit breakers have microprocessor relays that record waveforms of system events. In some cases, utilities may record a half-a-dozen event captures for every event. This is thousands of events per year. The industry needs faster, more automated, more conclusive, and easy-to-use systems that can process massive amounts of event recordings without extensive input/support from power system engineers. To address the need for a commercially viable solution that can classify waveform data, energies were directed to develop a universal neural network (NN) structure (deep learning algorithm) that works for a wide variety of system event types. The structure that showed the most promise was one that included the use of spectrograms. The technique has shown positive results in audio engineering, particularly with respect to speech recognition. A waveform signature could be treated as a spoken word like audio waveforms for specific things such as “YES” or “UP”. No two people produce the exact same waveform when speaking each of these words, but audio processing algorithms based on spectrograms and convolutional neural networks (CNN) can still distinguish the word regardless of the speaker. No two circuits produce the exact same waveform for a given event, but the NN can be trained to classify the event type regardless of the circuit or location on the circuit. A Power System Neural Network (PSNN) has been developed to use a CNN to classify events within waveform data for power systems. The waveform is converted to an array of values by way of spectrograms and interpreted as an image. This image is passed into the CNN. The test results on independent simulated test and validation datasets show greater than 99% accuracy. While the results thus far are based on simulated data, the performance of the PSNN is very promising and should work for a wide variety of power system conditions of interest. Ultimately, much of the custom code and tools used today and much of the manual effort expended today may be automated using this PSNN.

24 POWER TRANSMISSION AND DISTRIBUTION↗

Measuring Saturn's Electron Beam Energy Spectrum using Webb's Wedges

It is very difficult to measure the voltage of the load on the Saturn accelerator. Time-resolved measurements such as vacuum voltmeters and V-dot monitors are impractical at best and completely change the pulsed power behavior at the load at worst. We would like to know the load voltage of the machine so that we could correctly model the radiation transport and tune our x-ray unfold methodology and circuit simulations of the accelerator. Step wedges have been used for decades as a tool to measure the end - point energies of high energy particle beams. Typically, the technique is used for multi-megavolt accelerators, but we have adapted it to Saturn's modest <2 MV end-point energy and modified the standard bremsstrahlung x-ray source to extract the electron beam without changing the physics of the load region. We found clear evidence of high energy electrons >2 MV. We also attempted to unfold an electron energy spectrum using a machine learning algorithm and while these results come with large uncertainties, they qualitatively agree with PIC simulation results.

43 PARTICLE ACCELERATORS↗

Introduction to Special Section: Machine Learning for Image-based Geologic Interpretation

Image-based geological interpretation has been a labor-intensive and time-consuming process because it requires well-trained geoscientists to identify geological structures, features, and textures from various types of images. These images include scanning electron microscopic images, optical microscopic images, optical photos, resistivity images, seismic volumes, remote-sensing images, etc. With fast-evolving machine learning (ML) technology and computing power in recent decades, computers can achieve nearhuman-level to super-human-level performance with scalable high efficiency in the computer vision field. These technological revolutions facilitated image-based geological interpretation in petroleum exploration and production. For example, a fault picking method applied to 3-D seismic volume data using deep learning can achieve superior performance in comparison to conventional auto-picking methods. In addition, under the new normal of low oil prices, the petroleum industry seeks cost-effective strategies such as automating traditionally labor-intensive processes. Nevertheless, the potential of applying ML to geological image interpretation is still facing a few key challenges including data scarcity, data distribution, poor data and/or label quality, data leakage, learning algorithms, model architecture, training methodologies, testing and evaluation metrics, hyper-parameters optimization, model drift, production deployment, and the like.

58 GEOSCIENCES↗

Operational Technology Behavioral Analytics (OTBA) (Final Technical Report DE-FE0031640)

This final report provides a summary of the methodology, findings, lessons learned, and insights from an investigation into the feasibility of the Operational Technology Behavioral Analytics (OTBA) cybersecurity approach. The concept was evaluated with data from the National Carbon Capture Center (NCCC) – a U.S. Department of Energy (DOE) funded facility that is managed and operated by Southern Company Services, Inc. at Alabama Power Company’s E. C. Gaston generating power plant in Wilsonville, Alabama. Appropriate data sources for the post-combustion carbon capture system were identified. Infrastructure was deployed to monitor, capture and archive data for the system. Critical parameters for each subsystem were identified and analyzed. Machine-learning algorithms were used to establish and characterize normal operations and subsequently identify anomalies. This effort yielded valuable insights and formed the basis of a data-centric strategy for detecting cyber-attacks along with a coordinated response philosophy. A significant takeaway is that the OTBA cybersecurity approach is quite portable; it can be applied to other critical infrastructure beyond fossil power generation.

20 FOSSIL-FUELED POWER PLANTS↗

Environmentally Adaptive, Multiband Software-Defined-Radar for Monitoring of Item of Interest in a Dynamically Cluttered Room

High-resolution multi-frequency radars when networked together, form a robust and seamless monitoring system for high-valued items. The multi-look-direction radar network investigated by LLNL and DSI, operates at 77 GHz and 5.8GHz, and is capable of detection at centimeter resolution movement of objects of interest. This dual frequency radar (unlike optical methods) can operate under various environments with conditions such a smoke, dust, and other natural or manmade obscurations. In addition, the multiband network radar is based on low-cost FCC approved EM specifications and can be scaled with the dimensions of the room and objects under consideration by user-defined inputs. Furthermore, the underlying radar signal processing based on software-defined radar engine is adaptive to its operational environment, where operators can input the size of the facility and object of interest and the distance between the object and radar. Finally, this multi-frequency radar employs a host of change detection and machine learning algorithms to reach performance levels in terms of high probability of detection and low false alarm rates while the monitoring state of the object can be reported remotely.

42 ENGINEERING↗

Application of FARM to an IES scenario within the FORCE ecosystem

The FARM (Feasible Actuator Range Modifier) software module is a component of the RAVEN-based FORCE framework for analysis of Integrated Energy Systems (IES). FARM supports the HERON software module in the evaluation of the optimal dispatch by evaluating feasible set-points for the different IES unit components. Set-points are required to satisfy limits on both production variables (i.e., the variables to be optimized such as the electrical power, the hydrogen production rate, etc.) and process variables tied to the service life of equipment (e.g., steam flowrate, vessel pressure, turbine firing temperature, etc.). This problem is addressed by adopting a two-stage approach. First, the HERON power dispatcher determines set-points that meet the constraints on the former variables (e.g., power levels and power ramp rate limits). These constraints are called explicit constraints. Then, FARM adjusts these set-points to ensure the respect of the limits on the latter variables given the knowledge of the system physics acquired through machine learning algorithms. These constraints are called implicit constraints. From this standpoint, FARM constitutes a bridge between the HERON power dispatcher that adopts a simplified description of the IES unit (low-resolution physics) and the HYBRID high-fidelity models (high-resolution physics). The original version of the FARM software module (FARM-Alpha) was released by Argonne National Laboratory in January 2021. In the latest version of the code released in July 2022 (FARM-Delta), the Reference Governor (RG) algorithm was upgraded to a Multi-Input Multi-Output version from its original Single-Input Single-Output form. The RG algorithm acts to enforce constraints. With this improvement an IES unit is now treated as a single dynamic system from the standpoint of control. The crosstalk among components in an IES unit is now fully considered thereby ensuring a true optimization is obtained for those units that have multiple set-points. In this report, the capabilities of FARM-Delta operating within the FORCE ecosystem are demonstrated for an IES test case. The specific configuration of IES unit for this case was selected by the IES team with consultation from the Advanced Reactor IES Expert Group. A full TEA analysis that invoked HERON, HYBRID, FARM, and RAVEN was performed and serves to demonstrate how the latest modification to FARM algorithms (i.e., state variable selection, state-space matrices derivation, set-point verification) can shape setpoints that might otherwise compromise the health of equipment through accelerated wear and tear. In this specific test case, it was demonstrated that these algorithms ensure a more efficient utilization of steam resources to be shared by two different subsystems, namely Balance of Plant (BOP) and High-Temperature Steam Electrolysis (HTSE). Finally, some code improvements that can further enhance the user-friendliness are suggested.

97 MATHEMATICS AND COMPUTING↗

Characterizing the contribution of bioaerosols diversity from complex aerosol particle samples.

Current global change scenarios expect to significantly increase the contribution of pollen to the total organic aerosol budget. In addition, pollen can burst into smaller fragments that are highly efficient as cloud condensation nuclei. However, current climate models still do not incorporate the effects of these particles due to detection and quantification challenges in complex aerosol mixtures. Chemical biomarkers (i.e. fructose) have commonly been used to trace pollen but this approximation can generate false positive results given the large number of shared compounds between different bioaerosols. A previous pilot EMSL experiment performed on pure pollen samples suggested that using a set of metabolites as a fingerprint of bioaerosols could serve to substantially increase detection accuracy over single biomarker approaches. In this proposal we developed novel bioinformatic strategies to characterize and quantify complex pollen mixtures present in the atmosphere. For that, we used diverse machine learning algorithms to analyze metabolic fingerprints from complex mixtures of different pollen acquired with high-resolution mass spectrometry (Orbitrap Q-Exactive). Our preliminary results demonstrated the potential to accurately discern and identify at specific relative abundances different pollen species in complex mixtures. Our research will lead to a significant advancement in the atmospheric chemistry and provide much needed data to improve the accuracy of climate models.

54 ENVIRONMENTAL SCIENCES↗

Rays for Roots - Integrating Backscatter X-Ray Phenotyping, Modeling and Genetics to Increase Carbon Sequestration and Switchgrass Resource Use (Final Report)

To increase carbon (C) deposition in the soil and enhance crop resource use efficiency, characterizing root form and function is essential. Several root and soil traits have been linked to increased root-to-soil C transfer. Technology that could provide high-resolution characterization of many of these traits in field conditions would revolutionize our ability to study and understand how to increase C sequestration. In this effort, we developed an initial early prototype backscatter X-ray system for non-destructive imaging of root traits. We collected initial backscatter X-ray data in field and lab settings and carried out early analysis of these data. Along with this prototype, we also developed a suite of root phenotyping approaches including advanced minirhizotron image analysis, soil core imaging, and mesocosm imaging. Minirhizotron (MR) tubes are clear tubes inserted into the soil in the field and used to image roots and the surrounding soil. Our team has developed deep learning-based methods that can segment roots from soil that can learn from imprecise image-level labels. The ability to learn or fine-tune our deep learning algorithms from image-level labels allows easier and faster application of these approaches to new locations and new plant species. We have successfully implemented and applied our MR analysis approaches to thousands of switchgrass MR images collected across geographical regions. An advantage of MR imaging is the ability to collect root and soil images over time. Our soil core analysis included collecting hundreds of soil core samples from harvested switchgrass fields and imaging these cores with both X-ray CT and backscatter X-ray imaging. Initial segmentation approaches for the X-ray CT images of these cores have been developed and applied. An advantage of soil core analysis is that it preserves the three-dimensional structures of the roots and soil in the core collected. Our group also developed photogrammetry-based mesocosm root imaging and phenotyping approaches. In this approach, a plant was grown in a large mesocosm with a three-dimensional grid of thin supporting lines inserted throughout the mesocosm. After the plant (and, correspondingly, the root architecture is grown and established) the soil media was removed and the supporting lines approximately preserved the three-dimensional root architecture. Then, we applied photogrammetry techniques to create a three-dimensional digital representation of the root architecture for which we developed analysis algorithms including skeletonization. We carried out our phenotyping development with powerful switchgrass resources and physiological and agroecosystem modeling to deliver novel technology. This project contributes to multiple ARPA-E missions including reduction of foreign imports of energy, reduction of energy-related emissions including greenhouse gases, and ensuring that the United States maintains a technological lead in developing and deploying advanced energy technology. Furthermore, the developed tools could transform public and private plant breeding and could be broadly applicable to other crops and, potentially, other application areas. Our team of engineers, plant and soil scientists, and modelers i) developed an early prototype backscatter X-ray platform that can operate in field conditions; ii) developed a suite of root phenotyping and characterization approaches as described above; iii) developed and carried out plant biology and physiology roots studies and; iv) developed and implemented mechanistic physiological modeling.

42 ENGINEERING↗