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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 1,171 records · Page 65
All sourcesNASA NTRSDOE OSTI
NASA NTRS1994

Accuracy assessment of the large-scale dynamic ocean topography from TOPEX/POSEIDON altimetry

The quality of TOPEX/POSEIDON determinations of the global scale dynamic ocean topography have been assessed by determining mean topography solutions for successive 10-day repeat cycles and by examining the temporal changes in the sea surface topography to identify known features. The assessment is based on the analysis of TOPEX altimeter data cycles 1 through 36. Important errors in the tide model used to correct the altimeter data have been identified. The errors were reduced significantly by use of a new tide model derived with the TOPEX/POSEIDON measurements. Maps of the global 1-year mean topography, produced using four of the most accurate of the marine geoid, show that the largest error in the dynamic ocean topography show expected features, such as the known annual hemispherical sea surface rise and fall and the seasonal variability due to monsoon influence in the Indian Ocean. Changes in the sequence of 10-day topography maps show the development and propagation of an equatorial Kelvin wave in the Pacific beginning in December 1992 with a propagation velocity of approximately 3 m/s. The observations are consistent with observed changes in the equatorial trade winds, and with tide gauge and other in situ observations of the strengthening of the El Nino. Comparison of TOPEX-determine sea surface height at points near oceanic tide gauges shows agreement at the 4 cm root-mean-square (RMS) level over the tropical Pacific. The results show that the TOPEX altimeter data set can be used to map the ocean surface with a temporal resolution of 10 days and an accuracy which is insonsistent with traditional in situ methods for the determination of sea level variations.

Tapley, B. D.↗
NASA NTRS2019

WASP-4b Arrived Early for the TESS Mission

The Transiting Exoplanet Survey Satellite (TESS) recently observed 18 transits of the hot Jupiter WASP-4b. The sequence of transits occurred 81.6±11.7 s earlier than had been predicted, based on data stretching back to 2007.This is unlikely to be the result of a clock error, because TESS observations of other hot Jupiters (WASP-6b, 18b,and 46b) are compatible with a constant period, ruling out an 81.6 s offset at the 6.4σlevel. The 1.3 day orbital period of WASP-4b appears to be decreasing at a rate of P12.6 1.2= ms per year. The apparent period change might be caused by tidal orbital decay or apsidal precession, although both interpretations have shortcomings. The gravitational influence of a third body is another possibility, though at present there is minimal evidence for such a body. Further observations are needed to confirm and understand the timing variation.

Binaries↗
NASA NTRS1998

Segmentation and tracking in echocardiographic sequences: active contours guided by optical flow estimates

This paper presents a method for segmentation and tracking of cardiac structures in ultrasound image sequences. The developed algorithm is based on the active contour framework. This approach requires initial placement of the contour close to the desired position in the image, usually an object outline. Best contour shape and position are then calculated, assuming that at this configuration a global energy function, associated with a contour, attains its minimum. Active contours can be used for tracking by selecting a solution from a previous frame as an initial position in a present frame. Such an approach, however, fails for large displacements of the object of interest. This paper presents a technique that incorporates the information on pixel velocities (optical flow) into the estimate of initial contour to enable tracking of fast-moving objects. The algorithm was tested on several ultrasound image sequences, each covering one complete cardiac cycle. The contour successfully tracked boundaries of mitral valve leaflets, aortic root and endocardial borders of the left ventricle. The algorithm-generated outlines were compared against manual tracings by expert physicians. The automated method resulted in contours that were within the boundaries of intraobserver variability.

Non-NASA Center↗
DOE OSTI2023

The little skate genome and the evolutionary emergence of wing-like fins

Skates are cartilaginous fish whose body plan features enlarged wing-like pectoral fins, enabling them to thrive in benthic environments. However, the molecular underpinnings of this unique trait remain unclear. Here we investigate the origin of this phenotypic innovation by developing the little skate Leucoraja erinacea as a genomically enabled model. Analysis of a high-quality chromosome-scale genome sequence for the little skate shows that it preserves many ancestral jawed vertebrate features compared with other sequenced genomes, including numerous ancient microchromosomes. Combining genome comparisons with extensive regulatory datasets in developing fins—including gene expression, chromatin occupancy and three-dimensional conformation—we find skate-specific genomic rearrangements that alter the three-dimensional regulatory landscape of genes that are involved in the planar cell polarity pathway. Functional inhibition of planar cell polarity signalling resulted in a reduction in anterior fin size, confirming that this pathway is a major contributor to batoid fin morphology. We also identified a fin-specific enhancer that interacts with several hoxa genes, consistent with the redeployment of hox gene expression in anterior pectoral fins, and confirmed its potential to activate transcription in the anterior fin using zebrafish reporter assays. Our findings underscore the central role of genome reorganization and regulatory variation in the evolution of phenotypes, shedding light on the molecular origin of an enigmatic trait.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2018

Structure of the 30S ribosomal decoding complex at ambient temperature

The ribosome translates nucleotide sequences of messenger RNA to proteins through selection of cognate transfer RNA according to the genetic code. To date, structural studies of ribosomal decoding complexes yielding high-resolution data have predominantly relied on experiments performed at cryogenic temperatures. New light sources like the X-ray free electron laser (XFEL) have enabled data collection from macromolecular crystals at ambient temperature. Here, we report an X-ray crystal structure of the Thermus thermophilus 30S ribosomal subunit decoding complex to 3.45 Å resolution using data obtained at ambient temperature at the Linac Coherent Light Source (LCLS). We find that this ambient-temperature structure is largely consistent with existing cryogenic-temperature crystal structures, with key residues of the decoding complex exhibiting similar conformations, including adenosine residues 1492 and 1493. Minor variations were observed, namely an alternate conformation of cytosine 1397 near the mRNA channel and the A-site. Our serial crystallography experiment illustrates the amenability of ribosomal microcrystals to routine structural studies at ambient temperature, thus overcoming a long-standing experimental limitation to structural studies of RNA and RNA–protein complexes at near-physiological temperatures.

59 BASIC BIOLOGICAL SCIENCES↗
NASA NTRS1975

Theoretical studies of massive stars. I - Evolution of a 15-solar-mass star from the zero-age main sequence to neon ignition

The evolution of a star with mass 15 times that of the sun from the zero-age main sequence to neon ignition has been computed by the Henyey method. The hydrogen-rich envelope and all shell sources were explicitly included in the models. An algorithm has been developed for approximating the results of carbon burning, including the branching ratio for the C-12 + C-12 reaction and taking some secondary reactions into account. Penetration of the convective envelope into the core is found to be unimportant during the stages covered by the models. Energy transfer from the carbon-burning shell to the core by degenerate electron conduction becomes important after the core carbon-burning stage. Neon ignition will occur in a semidegenerate core and will lead to a mild 'flash.' Detailed numerical results are given in an appendix. Continuation of the calculations into later stages and variations with the total mass of the star will be discussed in later papers.

Endal, A. S.↗
NASA NTRS2004

Exceptional Stars Origins, Companions, Masses and Planets

As SIM Interdisciplinary Scientist, we will study the formation, nature and planetary companions of the exotic endpoints of stellar evolution. Our science begins with stars evolving from asymptotic branch giants into white dwarfs. We will determine the parallax and orbital inclination of several iron-deficient post-AGB stars, who peculiar abundances and infrared excesses are evidence that they are accreting gas depleted of dust from a circumbinary disk. Measurement of the orbital inclination, companion mass arid parallax will provide critical constraints. One of these stars is a prime candidate for trying nulling observations, which should reveal light reflected from both the circumbinary and Roche disks. The circumbinary disks seem favorable sites for planet formation. Next, we will search for planets around white dwarfs, both survivors froni the main-sequence stage, and ones newly formed from the circumbinary disks of post-AGB binaries or in white dwarf mergers. Moving up in mass, we will measure the orbital reflex of OB/Be companions to pulsars, determine natal kicks and presupernova orbits, and expand the sample of well-determined neutron star masses. We will obtain the parallax of a transient X-ray binary, whose quiescent emission may be thermal emission from the neutron star, aiming for precise measurement of the neutron star radius. Finally, black holes. We will measure the reflex motions of the companion of what appear to be the most massive stellar black holes. The visual orbits will determine natal kicks, and test the assumptions underlying mass estimates made from the radial velocity curves, projected rotation, and ellipsoidal variations. In addition, we will attempt to observe the visual orbit of SS 433, as well as the proper motion of the emission line clumps in its relativistic jets. Additional information is included in the original document.

Kulkarni, Shrinivas R.↗
DOE OSTI2019

Spatial variations in the Milky Way disc metallicity–age relation

ABSTRACT Stellar ages are a crucial component to studying the evolution of the Milky Way. Using Gaia DR2 distance estimates, it is now possible to estimate stellar ages for a larger volume of evolved stars through isochrone matching. This work presents [M/H]–age and [α/M]–age relations derived for different spatial locations in the Milky Way disc. These relations are derived by hierarchically modelling the star formation history of stars within a given chemical abundance bin. For the first time, we directly observe that significant variation is apparent in the [M/H]–age relation as a function of both Galactocentric radius and distance from the disc mid-plane. The [M/H]–age relations support claims that radial migration has a significant effect in the plane of the disc. Using the [M/H] bin with the youngest mean age at each radial zone in the plane of the disc, the present-day metallicity gradient is measured to be −0.059 ± 0.010 dex kpc−1, in agreement with Cepheids and young field stars. We find a vertically flared distribution of young stars in the outer disc, confirming predictions of models and previous observations. The mean age of the [M/H]–[α/M] distribution of the solar neighbourhood suggests that the high-[M/H] stars are not an evolutionary extension of the low-α sequence. Our observational results are important constraints to Galactic simulations and models of chemical evolution.

Feuillet, Diane K.↗
DOE OSTI2020

The mole genome reveals regulatory rearrangements associated with adaptive intersexuality

Linking genomic variation to phenotypical traits remains a major challenge in evolutionary genetics. In this study, we use phylogenomic strategies to investigate a distinctive trait among mammals: the development of masculinizing ovotestes in female moles. By combining a chromosome-scale genome assembly of the Iberian mole, Talpa occidentalis, with transcriptomic, epigenetic, and chromatin interaction datasets, we identify rearrangements altering the regulatory landscape of genes with distinct gonadal expression patterns. These include a tandem triplication involving CYP17A1, a gene controlling androgen synthesis, and an intrachromosomal inversion involving the pro-testicular growth factor gene FGF9, which is heterochronically expressed in mole ovotestes. Transgenic mice with a knock-in mole CYP17A1 enhancer or overexpressing FGF9 showed phenotypes recapitulating mole sexual features. Our results highlight how integrative genomic approaches can reveal the phenotypic impact of noncoding sequence changes.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2022

Indirect Routes to Aminoacyl-tRNA: The Diversity of Prokaryotic Cysteine Encoding Systems

Universally present aminoacyl-tRNA synthetases (aaRSs) stringently recognize their cognate tRNAs and acylate them with one of the proteinogenic amino acids. However, some organisms possess aaRSs that deviate from the accurate translation of the genetic code and exhibit relaxed specificity toward their tRNA and/or amino acid substrates. Typically, these aaRSs are part of an indirect pathway in which multiple enzymes participate in the formation of the correct aminoacyl-tRNA product. The indirect cysteine (Cys)-tRNA pathway, originally thought to be restricted to methanogenic archaea, uses the unique O -phosphoseryl-tRNA synthetase (SepRS), which acylates the non-proteinogenic amino acid O -phosphoserine (Sep) onto tRNA Cys . Together with Sep-tRNA:Cys-tRNA synthase (SepCysS) and the adapter protein SepCysE, SepRS forms a transsulfursome complex responsible for shuttling Sep-tRNA Cys to SepCysS for conversion of the tRNA-bound Sep to Cys. Here, we report a comprehensive bioinformatic analysis of the diversity of indirect Cys encoding systems. These systems are present in more diverse groups of bacteria and archaea than previously known. Given the occurrence and distribution of some genes consistently flanking SepRS, it is likely that this gene was part of an ancient operon that suffered a gradual loss of its original components. Newly identified bacterial SepRS sequences strengthen the suggestion that this lineage of enzymes may not rely on the m 1 G37 identity determinant in tRNA. Some bacterial SepRSs possess an N-terminal fusion resembling a threonyl-tRNA synthetase editing domain, which interestingly is frequently observed in the vicinity of archaeal SepCysS genes. We also found several highly degenerate SepRS genes that likely have altered amino acid specificity. Cross-analysis of selenocysteine (Sec)-utilizing traits confirmed the co-occurrence of SepCysE and the Sec-utilizing machinery in archaea, but also identified an unusual O -phosphoseryl-tRNA Sec kinase fusion with an archaeal Sec elongation factor in some lineages, where it may serve in place of SepCysE to prevent crosstalk between the two minor aminoacylation systems. These results shed new light on the variations in SepRS and SepCysS enzymes that may reflect adaptation to lifestyle and habitat, and provide new information on the evolution of the genetic code.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2016

Modification of the electronic properties of hexagonal boron-nitride in BN/graphene vertical heterostructures

Van der Waals (vdW) heterostructures consist of isolated atomic planar structures, assembled layer- by-layer into desired structures in a well-defined sequence. Graphene deposited on hexagonal boron nitride (h-BN) has been first considered as a testbed system for vdW heterostructures, and many others have been demonstrated both theoretically and experimentally, revealing many attractive properties and phenomena. However, much less emphasis has been placed on how graphene actively affects h-BN properties. Here, we perform local probe measurements on single-layer h-BN grown over graphene and highlight the manifestation of a proximity effect that significantly affects the electronic properties of h-BN due to its coupling with the underlying graphene. We find electronic states originating from the graphene layer and the Cu substrate to be injected into the wide electronic gap of the h-BN top layer. Such proximity effect is further confirmed in a study of the variation of h-BN in-gap states with interlayer couplings, elucidated using a combination of topographical/ spectroscopic measurements and first-principles density functional theory calculations. In conclusion, the findings of this work indicate the potential of mutually engineering electronic properties of the components of vdW heterostructures.

36 MATERIALS SCIENCE↗
DOE OSTI2015

SU-E-T-145: Beam Characteristics of Flattening Filter Free Beams Including Low Dose Rate Setting

Purpose: In commissioning of volumetric modulated arc therapy (VMAT), it is necessary to evaluate the beam characteristics of various dose rate settings with potential to use. The aim of this study is to evaluate the beam characteristics of flattened and flattening filter free (FFF) including low dose rate setting. Methods: We used a Varian TrueBeam with Millennium 120 MLC. Both 6 and 10 MV beams with or without flattening filter were used for this study. To evaluate low-dose rate FFF beams, specially-designed leaf sequence files control out-of-field MLC leaf pair at constant dose rate ranging from 80 to 400 MU/min. For dose rate from 80 MU/min to the maximum usable value of all energies, beam output were measured using ionization chamber (CC04, IBA). The ionization chamber was inserted into water equivalent phantom (RT3000-New, R-tech), and the phantom was set with SAD of 100cm. The beam profiles were performed using the 2D diode array (Profiler2, Sun Nuclear). The SSD was set to 90cm and a combined 30cmx30cmx9cm phantom which consisted of solid water slabs was put on the device. All measurement were made using 100MU irradiation for 10cmx10cm jaw-defined field size with a gantry angle of 0°. Results: In all energies, the dose rate dependences with beam output and variation coefficient were within 0.2% and 0.07%, respectively. The flatness and symmetry exhibited small variations (flatness ≤0.1 point and symmetry≤0.3 point at absolute difference). Conclusion: We had studied the characteristics of flattened and FFF beam over the 80 MU/min. Our results indicated that the beam output and profiles of FFF of TrueBeam linac were highly stable at low dose rate setting.

60 APPLIED LIFE SCIENCES↗
DOE OSTI2020

Amplicon Sequencing Assessment to Measure Microbial Community Response from Heavy Metal Contaminated Soils in Savannah River site, Tims Branch watershed

Long-term presence of heavy metal contamination in soils is correlated with changes in microbial community structures and can lead to the reduction of indigenous species. Tolerance to soil heavy metal toxicity varies among different microbial communities. It remains unclear whether long term effects caused by metal perturbations are associated with soil microbial community dysregulation in Tims Branch watershed. Research Questions: Does heavy metal contamination in Tims Branch soils decrease microbial species diversity significantly compared to non-contaminated soils? Does the species richness decrease in contaminated samples? between samples? Is diversity in low, mid and high contamination soils significantly different compared to control samples? Hypothesis: The relative abundance and diversity of species are significantly altered in soils which are contaminated with heavy metals in the Tims Branch watershed. Objectives: Use amplicon sequencing technology along with bioinformatics to compare bacterial communities between four sites in Tims Branch watershed. Evaluate the percent relative abundance and diversity across the site. Conclusions: All bacterial communities exposed to different heavy metal concentrations were dominated by four major groups (Proteobacteria, Acidobacteria, Chloroflexi and Verrucomicrobia). The dominant phyla Proteobacteria, Acidobacteria and Chloroflexi accounted for 61 % of the relative abundance. Soil bacterial α-diversity, expressed as observed species richness metric and Shannon's diversity index, was the highest in sample location four (high contamination). The lowest observed was at the control location. Species richness increased when concentrations of heavy metals were localized, inferring that the metals can alter microbial community structure. PERMANOVA analysis between contaminated groups tested significant using the Adonis (F (4,29) =1.9712; p < 0.001). There is a 20 percent variation explained between groups (R2 = 0.214). This analysis proves to be beneficial in detecting microbial communities altered by contaminated soils. Moreover, certain concentrations of heavy metals can alter microbial community structures.

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗
DOE OSTI2020

Expression profiling of MADS-box gene family revealed its role in vegetative development and stem ripening in S. spontaneum

Sugarcane is the most important sugar and biofuel crop. MADS-box genes encode transcription factors that are involved in developmental control and signal transduction in plants. Systematic analyses of MADS-box genes have been reported in many plant species, but its identification and characterization were not possible until a reference genome of autotetraploid wild type sugarcane specie, Saccharum spontaneum is available recently. We identified 182 MADS-box sequences in the S. spontaneum genome, which were annotated into 63 genes, including 6 (9.5%) genes with four alleles, 21 (33.3%) with three, 29 (46%) with two, 7 (11.1%) with one allele. Paralogs (tandem duplication and disperse duplicated) were also identified and characterized. These MADS-box genes were divided into two groups; Type-I (21 Mα, 4 Mβ, 4 Mγ) and Type-II (32 MIKCc, 2 MIKC*) through phylogenetic analysis with orthologs in Arabidopsis and sorghum. Structural diversity and distribution of motifs were studied in detail. Chromosomal localizations revealed that S. spontaneum MADS-box genes were randomly distributed across eight homologous chromosome groups. The expression profiles of these MADS-box genes were analyzed in leaves, roots, stem sections and after hormones treatment. Important alleles based on promoter analysis and expression variations were dissected. qRT-PCR analysis was performed to verify the expression pattern of pivotal S. spontaneum MADS-box genes and suggested that flower timing genes ( SOC1 and SVP ) may regulate vegetative development.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2023

Global Characteristics of Observable Foreshocks for Large Earthquakes

Abstract Foreshocks are the only currently widely identified precursory seismic behavior, yet their utility and even identifiability are problematic, in part because of extreme variation in behavior. Here, we establish some global trends that help identify the expected frequency of foreshocks as well the type of earthquake most prone to foreshocks. We establish these tendencies using the global earthquake catalog of the U.S. Geological Survey National Earthquake Information Center with a completeness level of magnitude 5 and mainshocks with Mw≥7.0. Foreshocks are identified using three clustering algorithms to address the challenge of distinguishing foreshocks from background activity. The methods give a range of 15%–43% of large mainshocks having at least one foreshock but a narrower range of 13%–26% having at least one foreshock with magnitude within two units of the mainshock magnitude. These observed global foreshock rates are similar to regional values for a completeness level of magnitude 3 using the same detection conditions. The foreshock sequences have distinctive characteristics with the global composite population b-values being lower for foreshocks than for aftershocks, an attribute that is also manifested in synthetic catalogs computed by epidemic-type aftershock sequences, which intrinsically involves only cascading processes. Focal mechanism similarity of foreshocks relative to mainshocks is more pronounced than for aftershocks. Despite these distinguishing characteristics of foreshock sequences, the conditions that promote high foreshock productivity are similar to those that promote high aftershock productivity. For instance, a modestly higher percentage of interplate mainshocks have foreshocks than intraplate mainshocks, and reverse faulting events slightly more commonly have foreshocks than normal or strike-slip-faulting mainshocks. The western circum-Pacific is prone to having slightly more foreshock activity than the eastern circum-Pacific.

Geochemistry & Geophysics↗
DOE OSTI2019

WASP-4b Arrived Early for the TESS Mission

The Transiting Exoplanet Survey Satellite (TESS) recently observed 18 transits of the hot Jupiter WASP-4b. The sequence of transits occurred 81.6 ± 11.7 s earlier than had been predicted, based on data stretching back to 2007. This is unlikely to be the result of a clock error, because TESS observations of other hot Jupiters (WASP-6b, 18b, and 46b) are compatible with a constant period, ruling out an 81.6 s offset at the 6.4σ level. The 1.3 day orbital period of WASP-4b appears to be decreasing at a rate of P-dot =−12.6±1.2 ms per year. The apparent period change might be caused by tidal orbital decay or apsidal precession, although both interpretations have shortcomings. The gravitational influence of a third body is another possibility, though at present there is minimal evidence for such a body. Further observations are needed to confirm and understand the timing variation.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2017

The Initial Mass Function of the Inner Galaxy Measured from OGLE-III Microlensing Timescales

We use the timescale distribution of ∼3000 microlensing events measured by the OGLE-III survey, together with accurate new made-to-measure dynamical models of the Galactic bulge/bar region, to measure the IMF in the inner Milky Way. The timescale of each event depends on the mass of the lensing object, together with the relative distances and velocities of the lens and source. The dynamical model statistically provides these distances and velocities, allowing us to constrain the lens mass function, and thereby infer the IMF. Parameterizing the IMF as a broken power-law, we find slopes in the main-sequence α{sub ms}=1.31±0.10|{sub stat}±0.10|{sub sys}, and brown dwarf region α{sub bd}=−0.7±0.9|{sub stat}±0.8|{sub sys}, where we use a fiducial 50% binary fraction, and the systematic uncertainty covers the range of binary fractions 0%–100%. Similarly, for a log-normal IMF we conclude M{sub c}=(0.17±0.02|{sub stat}±0.01|{sub sys}) M{sub ⊙} and σ{sub m}=0.49±0.07|{sub stat}±0.06|{sub sys}. These values are very similar to a Kroupa or Chabrier IMF, respectively, showing that the IMF in the bulge is indistinguishable from that measured locally, despite the lenses lying in the inner Milky Way where the stars are mostly ∼10 Gyr old and formed on a fast α-element enhanced timescale. This therefore constrains models of IMF variation that depend on the properties of the collapsing gas cloud.

79 ASTRONOMY AND ASTROPHYSICS↗
NASA NTRS1977

Physical conditions in the solar corona during flarelike events

Soft X-ray images of the sun obtained with the S-056 telescope aboard Skylab are used to investigate physical conditions in the X-ray-emitting coronal plasma during flarelike events. Temporal and spatial variations in the density and temperature of the main X-ray source during a flare are determined along with the total radiative energy emitted by an observed loop system. Models for heat sources and energy balance are analyzed, radiative as well as conductive energy losses are computed, and an attempt is made to develop a self-consistent model of the observed X-ray event. It is concluded that: (1) loop tips constitute the source of the maximum X-ray flux; (2) conductive losses exceed radiative losses by several orders of magnitude; (3) energy (and possibly new matter) is added at loop tips; and (4) the most intense X-ray structures are located in areas where the magnetic field has a small radius of curvature and the axis of a loop sequence changes direction.

Vorpahl, J. A.↗