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DOE OSTI2023

Agricultural Ice Nuclei at Southern Great Plains Supplemental Sampling (AGINSGP-SUPP) Field Campaign Report

The Agricultural Ice Nuclei at Southern Great Plains Supplemental Sampling (AGINSGP-SUPP) field campaign took place from April 8 to April 28, 2022. It included sample collection and analysis of filter samples for ice-nucleating particle (INP) concentrations. By enabling quantification of INPs at warmer temperatures (i.e., T > 258 K), these samples complemented the real-time observations of INPs that were performed as part of the AGINSGP campaign during the same period. In addition to collecting ground-based samples, the campaign collected vertical samples of INPs aboard the Atmospheric Radiation Measurement (ARM) tethered balloon system (TBS) as shown in Figure 1. These vertical samples complemented the vertical profiling of aerosol properties that was supported under a related Facilities Integrating Collaborations for User Science (FICUS) proposal. The overall aim of these three campaigns was to improve understanding of the sources and variability in observed INP concentrations at ARM’s SGP observatory. For example, warm-temperature INPs in this agricultural region are thought to originate in part from regional emissions of fertile, agricultural soils containing high organic content. Laboratory experiments have shown that soil particles with high organic content are more efficient INPs than inorganic soils (e.g., Tobo et al. 2014). Quantification of warm-temperature INPs under ambient conditions currently can only be achieved via offline methods such as the ARM ice-nucleation spectrometer (INS). Therefore, offline sampling for the INS was required to complement the real-time INP measurements conducted during the AGINSGP campaign.

, tethered balloon system↗

DOE OSTI2023

The variable influence of anthropogenic noise on summer season coastal underwater soundscapes near a port and marine reserve

Monitoring soundscapes is essential for assessing environmental conditions for soniferous species, yet little is known about sound levels and contributors in Oregon coastal regions. From 2017-2021, during June-September, two hydrophones were deployed near Newport, Oregon to sample 10-13,000Hz underwater sound. One hydrophone was deployed near the Port of Newport in a high vessel activity area, and another 17km north within a protected Marine Reserve. Vessel noise and whale vocalizations were detected at both sites, but whales were recorded on more days at the Marine Reserve. Median sound levels in frequencies related to noise from various vessel types and sizes (50-4,000Hz) were up to 6dB higher at the Port of Newport, with greater diel variability compared to the Marine Reserve. In addition to documenting summer season conditions in Oregon waters, these results exemplify how underwater soundscapes can differ over short distances depending on anthropogenic activity.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2015

TRACING THE REVERBERATION LAG IN THE HARD STATE OF BLACK HOLE X-RAY BINARIES

We report results obtained from a systematic analysis of X-ray lags in a sample of black hole X-ray binaries, with the aim of assessing the presence of reverberation lags and studying their evolution during outburst. We used XMM-Newton and simultaneous Rossi X-ray Timing Explorer (RXTE) observations to obtain broadband energy coverage of both the disk and the hard X-ray Comptonization components. In most cases the detection of reverberation lags is hampered by low levels of variability-power signal-to-noise ratio (typically when the source is in a soft state) and/or short exposure times. The most detailed study was possible for GX 339-4 in the hard state, which allowed us to characterize the evolution of X-ray lags as a function of luminosity in a single source. Over all the sampled frequencies (∼0.05–9 Hz), we observe the hard lags intrinsic to the power-law component, already well known from previous RXTE studies. The XMM-Newton soft X-ray response allows us to detail the disk variability. At low frequencies (long timescales) the disk component always leads the power-law component. On the other hand, a soft reverberation lag (ascribable to thermal reprocessing) is always detected at high frequencies (short timescales). The intrinsic amplitude of the reverberation lag decreases as the source luminosity and the disk fraction increase. This suggests that the distance between the X-ray source and the region of the optically thick disk where reprocessing occurs gradually decreases as GX 339-4 rises in luminosity through the hard state, possibly as a consequence of reduced disk truncation.

79 ASTRONOMY AND ASTROPHYSICS↗

DOE OSTI2025

Soil biogeochemical properties and metrics of tree-mycorrhizal dominance for a 25-Ha forest in South Central Indiana, USA.

This data package contains a dataset used in the papers “Seeing the forest for all the trees: Mycorrhizal-associated nutrient economies are modulated by stem density and the synchrony between overstory and understory communities” and “Mycorrhizal associations of tree species influence soil nitrogen dynamics via effects on soil acid–base chemistry”. Four csv files are included along with a dataset. The dataset features chemical soil properties for a single sampling campaign within the 25 Ha Lilly-Dickey Woods Smithsonian Forest Global Earth Observatory (ForestGEO) plot in South Central Indiana, USA (ldw_dat_raw.csv). Also included are separate files focused on pH (pH_data.csv), carbon and nitrogen (CN_data.csv), and nitrification rates (Nitrification_data.csv). These variables are commonly associated with the tree-mycorrhizal dominance of forest stands. In these data subsets, each soil variable was matched to a 10 meter radius neighborhood wherein metrics of tree-mycorrhizal dominance (basal area, stem count, importance value, etc.) were calculated. Models between these soil variables and dominance metrics were used to investigate how different assessments of mycorrhizal associated nutrient economies (MANE) capture these relationships. This research was performed as a part of the Smithsonian ForestGEO project. This data package can be used to explore spatial variability in soil chemistry within a mature hardwood forest, or it can be combined with the included tree data, other fine-scale spatial information, or other tree inventory data for the site to evaluate how soil chemistry varies with tree community composition or edaphic or topographic properties.

Craig, Matthew [ORNL] (ORCID:0000000288907920)↗

DOE OSTI2024

A Targeted Search for Variable Gravitationally Lensed Quasars

We present a pipeline to identify photometric variability within strong gravitationally lensing candidates, in the Dark Energy Spectroscopic Instrument Legacy Imaging Surveys. In our first paper, we laid out our pipeline and presented seven new gravitationally lensed supernovae candidates in a retrospective search. In this companion paper, we apply a modified version of that pipeline to search for gravitationally lensed quasars. From a sample of 5807 strong lenses, we have identified 13 new gravitationally lensed quasar candidates (three of them quadruply lensed). We note that our methodology differs from most lensed quasar search algorithms that solely rely on the morphology, location, and color of the candidate systems. By also accounting for the temporal photometric variability of the posited lensed images in our search via difference imaging, we have discovered new lensed quasar candidates. While variability searches using difference imaging algorithms have been done in the past, they are typically performed over vast swathes of the sky, whereas we specifically target strong gravitationally lensed candidates. We also have applied our pipeline to 655 known gravitationally lensed quasar candidates from past lensed quasar searches, of which we identified 13 that display significant variability (one of them quadruply lensed). This pipeline demonstrates a promising search strategy to discover gravitationally lensed quasars in other existing and upcoming surveys.

79 ASTRONOMY AND ASTROPHYSICS↗

DOE OSTI2015

DISSECTING MAGNETAR VARIABILITY WITH BAYESIAN HIERARCHICAL MODELS

Neutron stars are a prime laboratory for testing physical processes under conditions of strong gravity, high density, and extreme magnetic fields. Among the zoo of neutron star phenomena, magnetars stand out for their bursting behavior, ranging from extremely bright, rare giant flares to numerous, less energetic recurrent bursts. The exact trigger and emission mechanisms for these bursts are not known; favored models involve either a crust fracture and subsequent energy release into the magnetosphere, or explosive reconnection of magnetic field lines. In the absence of a predictive model, understanding the physical processes responsible for magnetar burst variability is difficult. Here, we develop an empirical model that decomposes magnetar bursts into a superposition of small spike-like features with a simple functional form, where the number of model components is itself part of the inference problem. The cascades of spikes that we model might be formed by avalanches of reconnection, or crust rupture aftershocks. Using Markov Chain Monte Carlo sampling augmented with reversible jumps between models with different numbers of parameters, we characterize the posterior distributions of the model parameters and the number of components per burst. We relate these model parameters to physical quantities in the system, and show for the first time that the variability within a burst does not conform to predictions from ideas of self-organized criticality. We also examine how well the properties of the spikes fit the predictions of simplified cascade models for the different trigger mechanisms.

79 ASTRONOMY AND ASTROPHYSICS↗

DOE OSTI2020

Linking chemical precursors to the synthesis of erythritol tetranitrate

Erythritol tetranitrate (ETN) is a homemade explosive with high explosive performance which can easily be synthesized using widely available chemical precursors. Ascertaining the manner in which ETN is synthesized and being able to trace the ETN back to its precursor materials may aid in the forensic identification. As a proof of concept, seven different types of ETN were synthesized with laboratory grade materials as well as commercially available chemicals from the hardware store and grocery store. The seven different types of solid ETN and the reaction quenches were analyzed using high performance liquid chromatography (HPLC). Partial least squares discriminant analysis (PLS-DA) was used to probe the different classes of ETN and reaction quenches. Several PLS-DA models were produced with the seven different types of ETN and quenches having their own classification, ETN and quenches based on their acid source, and ETN and the quenches based on their nitrate source. Regardless of which classification manner was used, there were no differences found between the different types of ETN or their reaction quenches. Furthermore, it is demonstrated that there is inherent variability in the synthesis of ETN making HPLC an unreliable method to determine the source of the synthesis materials. Elemental impurities were measured in seven solid ETN samples and their reaction quenches by inductively coupled plasma mass spectrometry (ICP-MS). No differences were discovered between the solid ETN samples, but there were trace metals found in the reaction quenches which were found to be identifiers of the source material.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

DOE OSTI2024

Large Ensemble Exploration of Global Energy Transitions Under National Emissions Pledges

Global climate goals require a transition to a deeply decarbonized energy system. Meeting the objectives of the Paris Agreement through countries' nationally determined contributions and long-term strategies represents a complex problem with consequences across multiple systems shrouded by deep uncertainty. Robust, large-ensemble methods and analyses mapping a wide range of possible future states of the world are needed to help policymakers design effective strategies to meet emissions reduction goals. This study contributes a scenario discovery analysis applied to a large ensemble of 5,760 model realizations generated using the Global Change Analysis Model. Eleven energy-related uncertainties are systematically varied, representing national mitigation pledges, institutional factors, and techno-economic parameters, among others. The resulting ensemble maps how uncertainties impact common energy system metrics used to characterize national and global pathways toward deep decarbonization. Results show globally consistent but regionally variable energy transitions as measured by multiple metrics, including electricity costs and stranded assets. Larger economies and developing regions experience more severe economic outcomes across a broad sampling of uncertainty. The scale of CO 2 removal globally determines how much the energy system can continue to emit, but the relative role of different CO 2 removal options in meeting decarbonization goals varies across regions. Previous studies characterizing uncertainty have typically focused on a few scenarios, and other large-ensemble work has not (to our knowledge) combined this framework with national emissions pledges or institutional factors. Our results underscore the value of large-ensemble scenario discovery for decision support as countries begin to design strategies to meet their goals.

29 ENERGY PLANNING, POLICY, AND ECONOMY↗

DOE OSTI2016

Investigation of conduction mechanism in Pr{sub 0.67}Sr{sub 0.13}Ag{sub 0.20}MnO{sub 3} manganites

We report the electronic conduction mechanism in Pr{sub 0.67}Sr{sub 0.13}Ag{sub 0.20}MnO{sub 3} synthesized successfully by conventional solid state reaction method. The compound under investigation was subjected by X – Ray diffraction using Rietveld refinement which confirms the single phase nature of the sample. The resistivity behavior indicates the semiconducting behavior and reduction in resistivity on the application of magnetic fields. The electronic nature can further been evaluated by using variable range hopping (VRH) model and small polaron hopping model (SPH) showing that the double exchange interaction increases suppress the band gap and enhances carrier delocalization on the application of magnetic fields.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

DOE OSTI2015

OBSERVATIONAL SIGNATURES OF CONVECTIVELY DRIVEN WAVES IN MASSIVE STARS

We demonstrate observational evidence for the occurrence of convectively driven internal gravity waves (IGWs) in young massive O-type stars observed with high-precision CoRoT space photometry. This evidence results from a comparison between velocity spectra based on two-dimensional hydrodynamical simulations of IGWs in a differentially rotating massive star and the observed spectra. We also show that the velocity spectra caused by IGWs may lead to detectable line-profile variability and explain the occurrence of macroturbulence in the observed line profiles of OB stars. Our findings provide predictions that can readily be tested by including a sample of bright, slowly and rapidly rotating OB-type stars in the scientific program of the K2 mission accompanied by high-precision spectroscopy and their confrontation with multi-dimensional hydrodynamic simulations of IGWs for various masses and ages.

79 ASTRONOMY AND ASTROPHYSICS↗

DOE OSTI2015

Parametric Sensitivity Analysis for the Asian Summer Monsoon Precipitation Simulation in the Beijing Climate Center AGCM Version 2.1

In this study, we apply an efficient sampling approach and conduct a large number of simulations to explore the sensitivity of the simulated Asian summer monsoon (ASM) precipitation, including the climatological state and interannual variability, to eight parameters related to the cloud and precipitation processes in the Beijing Climate Center AGCM version 2.1 (BCC_AGCM2.1). Our results show that BCC_AGCM2.1 has large biases in simulating the ASM precipitation. The precipitation efficiency and evaporation coefficient for deep convection are the most sensitive parameters in simulating the ASM precipitation. With optimal parameter values, the simulated precipitation climatology could be remarkably improved, e.g. increased precipitation over the equator Indian Ocean, suppressed precipitation over the Philippine Sea, and more realistic Meiyu distribution over Eastern China. The ASM precipitation interannual variability is further analyzed, with a focus on the ENSO impacts. It shows the simulations with better ASM precipitation climatology can also produce more realistic precipitation anomalies during El Niño decaying summer. In the low-skill experiments for precipitation climatology, the ENSO-induced precipitation anomalies are most significant over continents (vs. over ocean in observation) in the South Asian monsoon region. More realistic results are derived from the higher-skill experiments with stronger anomalies over the Indian Ocean and weaker anomalies over India and the western Pacific, favoring more evident easterly anomalies forced by the tropical Indian Ocean warming and stronger Indian Ocean-western Pacific tele-connection as observed. Our model results reveal a strong connection between the simulated ASM precipitation climatological state and interannual variability in BCC_AGCM2.1 when key parameters are perturbed.

Asian summer monsoon precipitation↗

DOE OSTI2025

A copula-based rank histogram ensemble filter

Serial ensemble filters implement triangular probability transport maps to reduce high-dimensional inference problems to sequences of state-by-state univariate inference problems. The univariate inference problems are solved by sampling posterior probability densities obtained by combining constructed prior densities with observational likelihoods according to Bayes' rule. Many serial filters in the literature focus on representing the marginal posterior densities of each state. However, rigorously capturing the conditional dependencies between the different univariate inferences is crucial to correctly sampling multidimensional posteriors. This work proposes a new serial ensemble filter, called the copula rank histogram filter (CoRHF), that seeks to capture the conditional dependency structure between variables via empirical copula estimates; these estimates are used to rigorously implement the triangular (state-by-state univariate) Bayesian inference. The success of the CoRHF is demonstrated on two-dimensional examples and the Lorenz'63 problem. A practical extension to the high-dimensional setting is developed by localizing the empirical copula estimation, and is demonstrated on the Lorenz'96 problem.

97 MATHEMATICS AND COMPUTING↗

DOE OSTI2016

The rotation and galactic kinematics of mid M dwarfs in the solar neighborhood

Rotation is a directly observable stellar property, and it drives magnetic field generation and activity through a magnetic dynamo. Main-sequence stars with masses below approximately 0.35 M{sub ⊙} (mid-to-late M dwarfs) are fully convective, and are expected to have a different type of dynamo mechanism than solar-type stars. Measurements of their rotation rates provide insight into these mechanisms, but few rotation periods are available for these stars at field ages. Using photometry from the MEarth Project, we measure rotation periods for 387 nearby, mid-to-late M dwarfs in the northern hemisphere, finding periods from 0.1 to 140 days. The typical rotator has stable, sinusoidal photometric modulations at a semi-amplitude of 0.5%–1%. We find no period–amplitude relation for stars below 0.25 M{sub ⊙} and an anticorrelation between period and amplitude for higher-mass M dwarfs. We highlight the existence of older, slowly rotating stars without Hα emission that nevertheless have strong photometric variability. We use parallaxes, proper motions, radial velocities, photometry, and near-infrared metallicity estimates to further characterize the population of rotators. The Galactic kinematics of our sample is consistent with the local population of G and K dwarfs, and rotators have metallicities characteristic of the solar neighborhood. We use the W space velocities and established age–velocity relations to estimate that stars with P < 10 days have ages of on average <2 Gyr, and that those with P > 70 days have ages of about 5 Gyr. The period distribution is dependent on mass: as the mass decreases, the slowest rotators at a given mass have longer periods, and the fastest rotators have shorter periods. We find a lack of stars with intermediate rotation periods, and the gap between the fast and slow rotators is larger for lower masses. Our data are consistent with a scenario in which these stars maintain rapid rotation for several gigayears, then spin down quickly, reaching periods of around 100 days by a typical age of 5 Gyr.

79 ASTRONOMY AND ASTROPHYSICS↗

DOE OSTI2021

A VLA Survey of Late-time Radio Emission from Superluminous Supernovae and the Host Galaxies

We present the results of 3 GHz radio continuum observations of 23 superluminous supernovae (SLSNe) and their host galaxies by using the Karl G. Jansky Very Large Array conducted 5–21 yr after the explosions. The sample consists of 15 Type I and 8 Type II SLSNe at z < 0.3, providing one of the largest samples of SLSNe with late-time radio data. We detected radio emission from one SLSN (PTF10hgi) and five hosts with a significance of >5σ. No time variability is found in late-time radio light curves of the radio-detected sources in a timescale of years except for PTF10hgi, whose variability is reported in a separate study. Comparison of star formation rates (SFRs) derived from the 3 GHz flux densities with those derived from SED modeling based on UV–NIR data shows that four hosts have an excess of radio SFRs, suggesting obscured star formation. Upper limits for undetected hosts and stacked results show that the majority of the SLSN hosts do not have a significant obscured star formation. By using the 3 GHz upper limits, we constrain the parameters for afterglows arising from interaction between initially off-axis jets and circumstellar medium (CSM). Here, we found that the models with higher energies ( E iso ≳ several × 10 53 erg) and CSM densities ( n ≳ 0.01 cm –3 ) are excluded, but lower energies or CSM densities are not excluded with the current data. We also constrained the models of pulsar wind nebulae powered by a newly born magnetar for a subsample of SLSNe with model predictions in the literature.

79 ASTRONOMY AND ASTROPHYSICS↗

DOE OSTI2019

Towards optimized viral metagenomes for double-stranded and single-stranded DNA viruses from challenging soils

Soils impact global carbon cycling and their resident microbes are critical to their biogeochemical processing and ecosystem outputs. Based on studies in marine systems, viruses infecting soil microbes likely modulate host activities via mortality, horizontal gene transfer, and metabolic control. However, their roles remain largely unexplored due to technical challenges with separating, isolating, and extracting DNA from viruses in soils. Some of these challenges have been overcome by using whole genome amplification methods and while these have allowed insights into the identities of soil viruses and their genomes, their inherit biases have prevented meaningful ecological interpretations. Here we experimentally optimized steps for generating quantitatively-amplified viral metagenomes to better capture both ssDNA and dsDNA viruses across three distinct soil habitats along a permafrost thaw gradient. First, we assessed differing DNA extraction methods (PowerSoil, Wizard mini columns, and cetyl trimethylammonium bromide) for quantity and quality of viral DNA. This established PowerSoil as best for yield and quality of DNA from our samples, though ~1/3 of the viral populations captured by each extraction kit were unique, suggesting appreciable differential biases among DNA extraction kits. Second, we evaluated the impact of purifying viral particles after resuspension (by cesium chloride gradients; CsCl) and of viral lysis method (heat vs bead-beating) on the resultant viromes. DNA yields after CsCl particle-purification were largely non-detectable, while unpurified samples yielded 1–2-fold more DNA after lysis by heat than by bead-beating. Virome quality was assessed by the number and size of metagenome-assembled viral contigs, which showed no increase after CsCl-purification, but did from heat lysis relative to bead-beating. We also evaluated sample preparation protocols for ssDNA virus recovery. In both CsCl-purified and non-purified samples, ssDNA viruses were successfully recovered by using the Accel-NGS 1S Plus Library Kit. While ssDNA viruses were identified in all three soil types, none were identified in the samples that used bead-beating, suggesting this lysis method may impact recovery. Further, 13 ssDNA vOTUs were identified compared to 582 dsDNA vOTUs, and the ssDNA vOTUs only accounted for ~4% of the assembled reads, implying dsDNA viruses were dominant in these samples. This optimized approach was combined with the previously published viral resuspension protocol into a sample-to-virome protocol for soils now available at protocols.io, where community feedback creates ‘living’ protocols. This collective approach will be particularly valuable given the high physicochemical variability of soils, which will may require considerable soil type-specific optimization. This optimized protocol provides a starting place for developing quantitatively-amplified viromic datasets and will help enable viral ecogenomic studies on organic-rich soils.

Trubl, Gareth↗

DOE OSTI2019

Towards optimized viral metagenomes for double-stranded and single-stranded DNA viruses from challenging soils

Trubl, Gareth↗

DOE OSTI2019

Towards optimized viral metagenomes for double-stranded and single-stranded DNA viruses from challenging soils

Soils impact global carbon cycling and their resident microbes are critical to their biogeochemical processing and ecosystem outputs. Based on studies in marine systems, viruses infecting soil microbes likely modulate host activities via mortality, horizontal gene transfer, and metabolic control. However, their roles remain largely unexplored due to technical challenges with separating, isolating, and extracting DNA from viruses in soils. Some of these challenges have been overcome by using whole genome amplification methods and while these have allowed insights into the identities of soil viruses and their genomes, their inherit biases have prevented meaningful ecological interpretations. Here we experimentally optimized steps for generating quantitatively-amplified viral metagenomes to better capture both ssDNA and dsDNA viruses across three distinct soil habitats along a permafrost thaw gradient. First, we assessed differing DNA extraction methods (PowerSoil, Wizard mini columns, and cetyl trimethylammonium bromide) for quantity and quality of viral DNA. This established PowerSoil as best for yield and quality of DNA from our samples, though ∼1/3 of the viral populations captured by each extraction kit were unique, suggesting appreciable differential biases among DNA extraction kits. Second, we evaluated the impact of purifying viral particles after resuspension (by cesium chloride gradients; CsCl) and of viral lysis method (heat vs bead-beating) on the resultant viromes. DNA yields after CsCl particle-purification were largely non-detectable, while unpurified samples yielded 1–2-fold more DNA after lysis by heat than by bead-beating. Virome quality was assessed by the number and size of metagenome-assembled viral contigs, which showed no increase after CsCl-purification, but did from heat lysis relative to bead-beating. We also evaluated sample preparation protocols for ssDNA virus recovery. In both CsCl-purified and non-purified samples, ssDNA viruses were successfully recovered by using the Accel-NGS 1S Plus Library Kit. While ssDNA viruses were identified in all three soil types, none were identified in the samples that used bead-beating, suggesting this lysis method may impact recovery. Further, 13 ssDNA vOTUs were identified compared to 582 dsDNA vOTUs, and the ssDNA vOTUs only accounted for ∼4% of the assembled reads, implying dsDNA viruses were dominant in these samples. This optimized approach was combined with the previously published viral resuspension protocol into a sample-to-virome protocol for soils now available at protocols.io , where community feedback creates ‘living’ protocols. This collective approach will be particularly valuable given the high physicochemical variability of soils, which will may require considerable soil type-specific optimization. This optimized protocol provides a starting place for developing quantitatively-amplified viromic datasets and will help enable viral ecogenomic studies on organic-rich soils.

dsDNA viruses↗

DOE OSTI2017

Classifier-Guided Sampling Optimizer v. 1.0

The Classifier-Guided Sampling (CGS) Optimizer is a software implementation of the CGS algorithm, a type of evolutionary algorithm for performing search and optimization over a set of discrete design variables in the face of one or more objective functions.

Backlund, Peter B.↗