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At least 1,189 records · Page 66

Best practices in NMR metabolomics: Current state

A literature survey was conducted to identify current practices used by NMR metabolomics investigators when conducting and reporting their metabolomics studies. A total of 463 papers from 2020 and 80 papers from 2010 were selected from PubMed and were manually analyzed by a team of investigators to assess the extent and completeness of the experimental procedures and protocols reported. A significant number of the papers did not report on essential experimental details, incompletely stated which statistical methods were used, improperly applied supervised multivariate statistical analyses, or lacked validation of statistical models. A large diversity of protocols and software were identified, which suggests a lack of consensus and a relatively limited use of commonly agreed upon standards for conducting and reporting NMR metabolomics studies. In conclusion, the overall intent of the survey is to inform and encourage the NMR metabolomics community to develop and adopt best-practices for the field.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Statistical Properties of Magnetic Structures and Energy Dissipation during Turbulent Reconnection in the Earth's Magnetotail

Here, we present the first statistical study of magnetic structures and associated energy dissipation observed during a single period of turbulent magnetic reconnection, by using the in situ measurements of the Magnetospheric Multiscale mission in the Earth's magnetotail on 26 July 2017. The structures are selected by identifying a bipolar signature in the magnetic field and categorized as plasmoids or current sheets via an automated algorithm which examines current density and plasma flow. The size of the plasmoids forms a decaying exponential distribution ranging from subelectron up to ion scales. The presence of substantial number of current sheets is consistent with a physical picture of dynamic production and merging of plasmoids during turbulent reconnection. The magnetic structures are locations of significant energy dissipation via electric field parallel to the local magnetic field, while dissipation via perpendicular electric field dominates outside of the structures. Significant energy also returns from particles to fields.

79 ASTRONOMY AND ASTROPHYSICS↗

A hybrid approach to excited-state-specific variational Monte Carlo and doubly excited states

We extend our hybrid linear-method/accelerated-descent variational Monte Carlo optimization approach to excited states and investigate its efficacy in double excitations. In addition to showing a superior statistical efficiency when compared to the linear method, our tests on small molecules show good energetic agreement with benchmark methods. We also demonstrate the ability to treat double excitations in systems that are too large for a full treatment by using selected configuration interaction methods via an application to 4-aminobenzonitrile. Finally, we investigate the stability of state-specific variance optimization against collapse to other states’ variance minima and find that symmetry, Ansatz quality, and sample size all have roles to play in achieving stability.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Statistical properties of magnetic structures and energy dissipation during turbulent reconnection in the Earth's magnetotail

We present the first statistical study of magnetic structures and associated energy dissipation observed during a single period of turbulent magnetic reconnection, by using the in situ measurements of the Magnetospheric Multiscale mission in the Earth's magnetotail on 26 July 2017. The structures are selected by identifying a bipolar signature in the magnetic field and categorized as plasmoids or current sheets via an automated algorithm which examines current density and plasma flow. The size of the plasmoids forms a decaying exponential distribution ranging from subelectron up to ion scales. The presence of substantial number of current sheets is consistent with a physical picture of dynamic production and merging of plasmoids during turbulent reconnection. The magnetic structures are locations of significant energy dissipation via electric field parallel to the local magnetic field, while dissipation via perpendicular electric field dominates outside of the structures. Significant energy also returns from particles to fields.

Magnetotail↗

System Study: High-Pressure Core Spray 1998-2022

This report presents an unreliability evaluation of the high-pressure core spray (HPCS) at eight U.S. commercial operating boiling water reactors. New Standardized Plant Analysis Risk (SPAR) models with the most recent SPAR parameter update results were used in this report. Demand, run hour, and failure data from 1998–2022 for selected components were obtained from the Institute of Nuclear Power Operations Industry Reporting and Information System. The unreliability results are trended for the most recent 10-year period while yearly estimates for system unreliability are provided for the entire active period. Statistically significant increasing trends were identified in both the HPCS system start-only unreliability and 8-hour mission unreliability.

99 GENERAL AND MISCELLANEOUS↗

System Study: Reactor Core Isolation Cooling 1998-2022

This report presents an unreliability evaluation of the reactor core isolation cooling (RCIC) system at 28 U.S. commercial operating boiling water reactors. New Standardized Plant Analysis Risk (SPAR) models with the most recent SPAR parameter update results were used in this report. Demand, run hour, and failure data from calendar years 1998–2022 for selected components were obtained from the Institute of Nuclear Power Operations Industry Reporting and Information System. The unreliability results are trended for the most recent 10 year period while yearly estimates for system unreliability are provided for the entire active period. Statistically significant decreasing trends were identified in both the RCIC system start-only unreliability and 8-hour mission unreliability.

22 GENERAL STUDIES OF NUCLEAR REACTORS↗

System Study: High-Pressure Safety Injection 1998-2024

This report presents an unreliability evaluation of the high-pressure safety injection system (HPSI) at 62 U.S. commercial operating nuclear reactors. New Standardized Plant Analysis Risk (SPAR) models with the most recent SPAR parameter update results were used in this report. Demand, run hour, and failure data from calendar years 1998 to 2024 for selected components were obtained from the Institute of Nuclear Power Operations Industry Reporting and Information System. The unreliability results are trended for the most recent 10-year period and yearly estimates for system unreliability are provided for the entire active period. Statistically significant decreasing trends were identified in both the HPSI system start-only unreliability and 24-hour mission unreliability.

22 GENERAL STUDIES OF NUCLEAR REACTORS↗

Unsupervised Classification of Global Radar Units on Venus

Characterization of the Venusian surface in terms of its radar properties was accomplished by application of an unsupervised, linear discriminant algorithm to two Pioneer-Venus (PV) Orbiter radar data sets: the RMS-slope (surface roughness) and reflectivity. Both databases were spatially filtered to the same effective resolution of 100 km prior to classification. A recent supervised classification study using these data was based on presupposed morphologic significance of selected data ranges. The knowledge of both Venusian geology and the geologic significance of the radar data is so limited that the data warrant a more unsupervised approach; for this study a linear discriminant classifier was chosen. This approach is purely statistical, thereby removing any observer bias. Statistical significance of the resulting clusters was evaluated by an ancillary program in which an F test utilizing the Mahalanobis' distance.

Kozak, R. C.↗

The detection and observation of meteoroid and space debris impact features on the Solar Max satellite

The results of optical observations on the entire population of impact pits and holes discovered on nearly all of the returned parts of the Solar Maximum Mission satellite are described. Some statistically significant new results on impact dynamics are obtained as well as new number vs. size distributions for craters and holes ranging from 40 to 900 microns. The local spacecraft geometric shielding corrections are calculated and applied to the data. Some selected compositional results are presented which indicate that the Space Shuttle can be a source of impacting debris.

Warren, J. L.↗

Efficient Encoding and Rendering of Time-Varying Volume Data

Visualization of time-varying volumetric data sets, which may be obtained from numerical simulations or sensing instruments, provides scientists insights into the detailed dynamics of the phenomenon under study. This paper describes a coherent solution based on quantization, coupled with octree and difference encoding for visualizing time-varying volumetric data. Quantization is used to attain voxel-level compression and may have a significant influence on the performance of the subsequent encoding and visualization steps. Octree encoding is used for spatial domain compression, and difference encoding for temporal domain compression. In essence, neighboring voxels may be fused into macro voxels if they have similar values, and subtrees at consecutive time steps may be merged if they are identical. The software rendering process is tailored according to the tree structures and the volume visualization process. With the tree representation, selective rendering may be performed very efficiently. Additionally, the I/O costs are reduced. With these combined savings, a higher level of user interactivity is achieved. We have studied a variety of time-varying volume datasets, performed encoding based on data statistics, and optimized the rendering calculations wherever possible. Preliminary tests on workstations have shown in many cases tremendous reduction by as high as 90% in both storage space and inter-frame delay.

CODING↗

The Characterization of Deep Convective Clouds as an Invariant Calibration Target and as a Visible Calibration Technique

Deep convective clouds (DCCs) are ideal visible calibration targets because they are bright nearly isotropic solar reflectors located over the tropics and they can be easily identified using a simple infrared threshold. Because all satellites view DCCs, DCCs provide the opportunity to uniformly monitor the stability of all operational sensors, both historical and present. A collective DCC anisotropically corrected radiance calibration approach is used to construct monthly probability distribution functions (PDFs) to monitor sensor stability. The DCC calibration targets were stable to within 0.5% and 0.3% per decade when the selection criteria were optimized based on Aqua MODerate Resolution Imaging Spectroradiometer 0.65-micrometer-band radiances. The Tropical Western Pacific (TWP), African, and South American regions were identified as the dominant DCC domains. For the 0.65-micrometer band, the PDF mode statistic is preferable, providing 0.3%regional consistency and 1%temporal uncertainty over land regions. It was found that the DCC within the TWP had the lowest radiometric response and DCC over land did not necessarily have the highest radiometric response. For wavelengths greater than 1 micrometer, the mean statistic is preferred, and land regions provided a regional variability of 0.7%with a temporal uncertainty of 1.1% where the DCC land response was higher than the response over ocean. Unlike stratus and cirrus clouds, the DCC spectra were not affected by water vapor absorption.

Doelling, David R.↗

The Precipitation Rate Retrieval Algorithms for the GPM Dual-frequency Precipitation Radar

In this paper, precipitation rate retrieval algorithms for the Global Precipitation Measurement mission's Dual-frequency Precipitation Radar (DPR) are developed. The DPR consists of a Ku-band radar (KuPR; 13.6 GHz) and a Ka-band radar (KaPR; 35.5 GHz). For the KuPR, an algorithm similar to the Tropical Rainfall Measuring Mission's Precipitation Radar algorithm is developed, with the relation between precipitation rate R and massweighted mean diameter D m (R−D m relation) replacing the relation between the specific attenuation k and effective radar reflectivity factor Z e . The R−D m relation can also be applied to the KaPR and dual-frequency algorithms. In both the single-frequency and dual-frequency algorithms, the forward retrieval method is applied with an assumed adjustment factor for the R−D m relation (ε) and the results are evaluated to select the best value of ε. The advantages of the dual-frequency algorithm are the availability of the dual-frequency surface reference technique and the ZfKa method, which is a method to use the attenuation-corrected radar reflectivity factor Z f of KaPR, to select ε as well as the possibility to selectively use measurements from KuPR or KaPR. This paper also describes the derivation of the scattering table and the R−D m relation as well as the procedure for non-uniform beam filling correction in detail. The outputs are then statistically analyzed to demonstrate algorithm performance.

precipitation radar↗

DESI DR2 Reference Mocks: Clustering results from UCHUU ELGs and QSOs

High-redshift galaxy clustering provides a powerful probe of the growth of structure, testing models of dark matter, dark energy, and galaxy formation during the epoch when the Universe was rapidly evolving. Emission line galaxies (ELGs) and quasars (QSOs) are used as tracers of dark matter by the Dark Energy Spectroscopic Instrument (DESI) to probe this redshift regime. We present results from ELG and QSO mock catalogs created from the Uchuu N-body simulation and tuned to DESI Data Release 2 (DR2) clustering. Employing a modified subhalo abundance matching (SHAM) technique, we populate Uchuu halos and subhalos with QSOs between 0.8 < z < 2.1. For ELGs, we modify this method to select satellite galaxies with low velocities relative to their associated central halos, and populate a separate set of Uchuu halos and subhalos with ELGs between 0.8 < z < 1.6. In this paper, we reproduce the redshift evolution of number density and clustering statistics across the fitted range of scales. We also measure the large-scale clustering bias of both the data and mock samples. These results improve simulated lightcone construction from cosmological models and enhance our understanding of the galaxy-halo connection.

Vaisakh, R. [Southern Methodist U.] (ORCID:0009000↗

Characterization of microbial associations with methanotrophic archaea and sulfate-reducing bacteria through statistical comparison of nested Magneto-FISH enrichments

Methane seep systems along continental margins host diverse and dynamic microbial assemblages, sustained in large part through the microbially mediated process of sulfate-coupled Anaerobic Oxidation of Methane (AOM). This methanotrophic metabolism has been linked to consortia of anaerobic methane-oxidizing archaea (ANME) and sulfate-reducing bacteria (SRB). These two groups are the focus of numerous studies; however, less is known about the wide diversity of other seep associated microorganisms. We selected a hierarchical set of FISH probes targeting a range of Deltaproteobacteria diversity. Using the Magneto-FISH enrichment technique, we then magnetically captured CARD-FISH hybridized cells and their physically associated microorganisms from a methane seep sediment incubation. DNA from nested Magneto-FISH experiments was analyzed using Illumina tag 16S rRNA gene sequencing (iTag). Enrichment success and potential bias with iTag was evaluated in the context of full-length 16S rRNA gene clone libraries, CARD-FISH, functional gene clone libraries, and iTag mock communities. We determined commonly used Earth Microbiome Project (EMP) iTAG primers introduced bias in some common methane seep microbial taxa that reduced the ability to directly compare OTU relative abundances within a sample, but comparison of relative abundances between samples (in nearly all cases) and whole community-based analyses were robust. The iTag dataset was subjected to statistical co-occurrence measures of the most abundant OTUs to determine which taxa in this dataset were most correlated across all samples. In addition, many non-canonical microbial partnerships were statistically significant in our co-occurrence network analysis, most of which were not recovered with conventional clone library sequencing, demonstrating the utility of combining Magneto-FISH and iTag sequencing methods for hypothesis generation of associations within complex microbial communities. Network analysis pointed to many co-occurrences containing putatively heterotrophic, candidate phyla such as OD1, Atribacteria , MBG-B, and Hyd24-12 and the potential for complex sulfur cycling involving Epsilon -, Delta -, and Gammaproteobacteria in methane seep ecosystems.

59 BASIC BIOLOGICAL SCIENCES↗

Calibration improvements to electronically scanned pressure systems and preliminary statistical assessment

Orifice-to-orifice inconsistencies in data acquired with an electronically-scanned pressure system at the beginning of a wind tunnel experiment forced modifications to the standard, instrument calibration procedures. These modifications included a large increase in the number of calibration points which would allow a critical examination of the calibration curve-fit process, and a subsequent post-test reduction of the pressure data. Evaluation of these data has resulted in an improved functional representation of the pressure-voltage signature for electronically-scanned pressures sensors, which can reduce the errors due to calibration curve fit to under 0.10 percent of reading compared to the manufacturer specified 0.10 percent of full scale. Application of the improved calibration function allows a more rational selection of the calibration set-point pressures. These pressures should be adjusted to achieve a voltage output which matches the physical shape of the pressure-voltage signature of the sensor. This process is conducted in lieu of the more traditional approach where a calibration pressure is specified and the resulting sensor voltage is recorded. The fifteen calibrations acquired over the two-week duration of the wind tunnel test were further used to perform a preliminary, statistical assessment of the variation in the calibration process. The results allowed the estimation of the bias uncertainty for a single instrument calibration; and, they form the precursor for more extensive and more controlled studies in the laboratory.

Everhart, Joel L.↗

Subgrid modelling for two-dimensional turbulence using neural networks

Here in this investigation, a data-driven turbulence closure framework is introduced and deployed for the subgrid modelling of Kraichnan turbulence. The novelty of the proposed method lies in the fact that snapshots from high-fidelity numerical data are used to inform artificial neural networks for predicting the turbulence source term through localized grid-resolved information. In particular, our proposed methodology successfully establishes a map between inputs given by stencils of the vorticity and the streamfunction along with information from two well-known eddy-viscosity kernels. Through this we predict the subgrid vorticity forcing in a temporally and spatially dynamic fashion. Our study is both a priori and a posteriori in nature. In the former, we present an extensive hyper-parameter optimization analysis in addition to learning quantification through probability-density-function-based validation of subgrid predictions. In the latter, we analyse the performance of our framework for flow evolution in a classical decaying two-dimensional turbulence test case in the presence of errors related to temporal and spatial discretization. Statistical assessments in the form of angle-averaged kinetic energy spectra demonstrate the promise of the proposed methodology for subgrid quantity inference. In addition, it is also observed that some measure of a posteriori error must be considered during optimal model selection for greater accuracy. The results in this article thus represent a promising development in the formalization of a framework for generation of heuristic-free turbulence closures from data.

42 ENGINEERING↗

B/PS bulges in DESI Legacy edge-on galaxies – I. Sample building

ABSTRACT We present the biggest up-to-date sample of edge-on galaxies with boxy/peanut-shaped (B/PS) bulges and X-structures. The sample was prepared using images from the Dark Energy Spectroscopic Instrument (DESI) Legacy catalogue and contains about 2000 galaxies. To find suitable candidates in catalogue, we made the assumption that the residues (original images minus model) of galaxies with B/PS bulges should exhibit a characteristic X-shape. Galaxies with such features were selected by eye and then used as input data for a neural network training, which was applied to a bigger sample of edge-on galaxies. Using the available data and the photometric models from the literature, we investigated the observational and statistical properties of the sample created. Comparing the B/D ratios for galaxies with and without B/PS bulges, we found that the B/D ratio for galaxies from our sample is statistically higher, with typical values in the range ≈0.2–0.5 depending on the decomposition procedure. We studied how the opening angles φ of the X-structure and the length of its rays are distributed in the formed sample and found them to be consistent with previous measurements and predictions from N-body models, e.g. $\varphi \gtrsim 25{^\circ }$, but measured here for a much larger number of galaxies. We found a sharp increase in the B/PS bulge fraction for stellar masses log M⋆ ≳ 10.4, but for edge-on galaxies, which complements the results of previous works. The sample can be used in future work to test various bar models and their relationship with B/PS bulges, as well as to study their stability and evolution.

79 ASTRONOMY AND ASTROPHYSICS↗

An Indirect Search for Weakly Interacting Massive Particles in the Sun Using Upward-going Muons in NOvA

I present the first Dark Matter search results using the full data set collected with the upward-going muon trigger in NOvA. Weakly Interactive Massive Particles (WIMPs) are a theoretical non-baryonic form of Dark Matter. The nature of Dark Matter is one of the most exciting open questions in modern physics. Though its existence can be inferred by astrophysical evidence, its properties are not yet understood. If we assume that Dark Matter particles can produce Standard Model particles through their interactions, an indirect search can help shed light on this mystery.The NOvA collaboration has built a 14 kton, fine-grained, low-Z, total absorption tracking calorimeter at an off-axis angle to the NuMI neutrino beam. Even though the detector is optimized to observe electron neutrino appearance from a muon neutrino beam, it has a unique potential for more exotic searches given its excellent granularity and energy resolution and relatively low-energy neutrino thresholds. In fact, with an efficient upward-going muon trigger and sufficient background suppression offline, NOvA is capable of a competitive indirect Dark Matter search for low-mass WIMPs.The idea of the upward-going muon trigger is first to select high-quality muon tracks, then use the timing information of all of the hits of each track to estimate directionality. In this way, the background flux is suppressed by more than a factor of 10^5 at trigger level to a rate of approximately 1 Hz. To further optimize this search, we use only upward-going muons that point to the Sun, so our search occurs at night when the Sun is on the other side of the Earth. This strategy also allows us to use the time when the Sun is above the horizon as a control region to estimate the background. Ultimately, implementation of a cut based and maximum likelihood analysis provides a powerful tool for rejecting background and selecting a sample of neutrino-induced upward-going muons. The overall background rejection power achieved by the analysis is substantial and impressive. Starting with approximately 150,000 events per second, we reduced it to 40 events per year. Since no statistically significant excess was found, a 90\% C.L. upper limit on the expected muon flux of upward-going muons has been set using the upper limit on the number of events given the number of observed events in the signal region. Lastly, by assuming the theory behind the upward-going muon flux, a limit on the WIMP-nucleon spin-dependent cross-section in the Sun was estimated. Although the limits on the spin-dependent cross-section do not appear to be competitive with previous indirect Dark Matter searches, the upward-going muon flux limits are promising. The upward-going muon flux limits could extend these results to a broader class of models that are not specific to the dark matter theory but produce upward-going muons, leading to competitive results.

Principato, Cristiana↗