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At least 1,207 records · Page 67

Charging and Release Mechanisms of Flexible Macromolecules in Droplets

We study systematically the charging and release mechanisms of a flexible macromolecule, modeled by poly(ethylene glycol) (PEG), in a droplet by using molecular dynamics simulations. We compare how PEG is solvated and charged by sodium Na{sup +} ions in a droplet of water (H{sub 2}O), acetonitrile (MeCN), and their mixtures. Initially, we examine the location and the conformation of the macromolecule in a droplet bearing no net charge. It is revealed that the presence of charge carriers do not affect the location of PEG in aqueous and MeCN droplets compared with that in the neutral droplets, but the location of the macromolecule and the droplet size do affect the PEG conformation. PEG is charged on the surface of a sodiated aqueous droplet that is found close to the Rayleigh limit. Its charging is coupled to the extrusion mechanism, where PEG segments leave the droplet once they coordinate a Na{sup +} ion or in a correlated motion with Na{sup +} ions. In contrast, as PEG resides in the interior of a MeCN droplet, it is sodiated inside the droplet. The compact macro-ion transitions through partially unwound states to an extended conformation, a process occurring during the final stage of desolvation and in the presence of only a handful of MeCN molecules. For charged H{sub 2}O/MeCN droplets, the sodiation of PEG is determined by the H{sub 2}O component, reflecting its slower evaporation and preference over MeCN for solvating Na{sup +} ions. We use the simulation data to construct an analytical model that suggests that the droplet surface electric field may play a role in the macro-ion–droplet interactions that lead to the extrusion of the macro-ion. This study provides the first evidence of the effect of the surface electric field by using atomistic simulations. .

74 ATOMIC AND MOLECULAR PHYSICS↗

Detectability of cosmic dark flow in the type ia supernova redshift-distance relation

We reanalyze the detectability of large-scale dark flow (or local bulk flow) with respect to the CMB background based upon the redshift–distance relation for SN Ia. We made two independent analyses: one based upon identifying the three Cartesian velocity components; and the other based upon the cosine dependence of the deviation from Hubble flow on the sky. We apply these analyses to the Union2.1 SN Ia data and to the SDSS-II supernova survey. For both methods, results for low redshift, z<0.05, are consistent with previous searches. We find a local bulk flow of v {sub bf} ∼ 300 km s{sup −1} in the direction of (l, b) ∼ (270, 35)°. However, the search for a dark flow at z>0.05 is inconclusive. Based upon simulated data sets, we deduce that the difficulty in detecting a dark flow at high redshifts arises mostly from the observational error in the distance modulus. Thus, even if it exists, a dark flow is not detectable at large redshift with current SN Ia data sets. We estimate that a detection would require both significant sky coverage of SN Ia out to z = 0.3 and a reduction in the effective distance modulus error from 0.2 mag to ≲0.02 mag. We estimate that a greatly expanded data sample of ∼10{sup 4} SN Ia might detect a dark flow as small as 300 km s{sup −1} out to z = 0.3 even with a distance modulus error of 0.2 mag. This may be achievable in a next generation large survey like LSST.

79 ASTRONOMY AND ASTROPHYSICS↗

Testing of Cloud Microphysics Scheme with Snow Events

One of the grand challenges of the Global Precipitation Measurement (GPM) mission is to improve precipitation measurements in mid- and high-latitudes during cold seasons through the use of high-frequency passive microwave radiometry. For this, the Weather Research Forecast (WRF) model with the Goddard microphysics scheme is coupled with the Satellite Data Simulation Unit (WRF-SDSU) that has been developed to facilitate the over-snowfall retrieval algorithm by providing virtual cloud library and microwave brightness temperature (To) measurements consistent to the GPM Microwave Imager (GMI). This study tested the Goddard cloud microphysics scheme in WRF in snowstorm events (January 20-22, 2007) over the Canadian CloudSat/CALIPSO Validation Project (C3VP) site up in Ontario, Canada. In this meeting, we will present the performance of the Goddard cloud microphysics scheme both with 2ice (ice and snow) and 3ice (ice, snow and graupel) as well as other WRF microphysics schemes. Results will be compared with the King Radar data. We will also use the WRF model outputs to drive the Goddard SDSU to calculate radiances and backscattering signals consistent to satellite direct observations. These simulated radiance are evaluated against the measurement from A-Train satellites.

Tao, Wei-Kuo↗

Self-focusing of profiled ultrashort-wavelength laser beams in air

We report on the results of laboratory experiments of filamentation of sharply focused gigawatt femtosecond laser radiation passed through various aperture diaphragms in air. For the multiple filamentation regime, the dependences of the length and spatial structure of the filamentation region on the initial beam profile are established. It is found that light beam profiling by a diaphragm leads in some cases to a displacement of the filamentation region and to repeated self-focusing of radiation behind the linear focal waist. In the beam of the same power in the absence of a diaphragm and in the regime of the formation of a single filament, this effect terminates in front of the geometrical focus. The experimental results are illustrated by numerical simulation data.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Trends in Reverse-Current Change in Tunnel MIS Diodes with Calcium Fluoride on Si(111) Upon the Formation of an Extra Oxide Layer

The currents flowing in metal–CaF{sub 2}–n-Si and metal–SiO{sub 2}–CaF{sub 2}–n-Si structures with the same (about 1.5 nm) fluoride thickness are compared in the reverse-bias mode. It is revealed that the current in the case of a two-layer dielectric can be notably higher within a certain voltage range. Such unexpected behavior is associated with the coexistence of both electron and hole components of the current as well as with the configuration of the SiO{sub 2}–CaF{sub 2} barrier through which tunneling occurs. The results of measurements and explanatory simulation data are presented.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

On Transfer Learning Of Neural Networks Using Bi-Fidelity Data For Uncertainty Propagation

Due to their high degree of expressiveness, neural networks have recently been used as surrogate models for mapping inputs of an engineering system to outputs of interest. Once trained, neural networks are computationally inexpensive to evaluate and remove the need for repeated evaluations of computationally expensive models in uncertainty quantification applications. However, given the highly parameterized construction of neural networks, especially deep neural networks, accurate training often requires large amounts of simulation data that may not be available in the case of computationally expensive systems. In this paper, to alleviate this issue for uncertainty propagation, we explore the application of transfer learning techniques using training data generated from both high- and low-fidelity models. We explore two strategies for coupling these two datasets during the training procedure, namely, the standard transfer learning and the bi-fidelity-weighted learning. In the former approach, a neural network model mapping the inputs to the outputs of interest is trained based on the low-fidelity data. The high-fidelity data are then used to adapt the parameters of the upper layer(s) of the low-fidelity network, or train a simpler neural network to map the output of the low-fidelity network to that of the high-fidelity model. In the latter approach, the entire low-fidelity network parameters are updated using data generated via a Gaussian process model trained with a small high-fidelity dataset. The parameter updates are performed via a variant of stochastic gradient descent with learning rates given by the Gaussian process model. Using three numerical examples, we illustrate the utility of these bi-fidelity transfer learning methods where we focus on accuracy improvement achieved by transfer learning over standard training approaches.

97 MATHEMATICS AND COMPUTING↗

One-Parameter Analytical Derivation in Modified Budyko Framework for Unsteady-State Streamflow Elasticity in Humid Catchments

The changes in climate and catchment properties have altered the hydrological processes significantly at different spatiotemporal scales around the world. In particular for finer time scales, changes in water storage, which has been commonly neglected for long-term temporal scales, may play an important role on hydrological processes. Nevertheless, few studies addressed this question in modifying the Budyko framework, with most of them remaining a steady-state assumption on catchment characteristics. Here, in this work, we derive new analytical formulas of unsteady-state streamflow elasticity in a modified Budyko framework, incorporating both storage change and one specific parameter for catchment properties. We study 78 humid catchments in the USA with simulation data of daily hydrological processes from a probability-distribution-based hydrological model (the modified HyMOD). As indicated by results, the annual storage change ratio is linearly correlated with the annual aridity index, and this relationship can be used to estimate elasticity coefficients with our formulas. The estimated elasticity coefficients perform well in simulating the annual streamflow with the power-law model. For different catchments, variability of the unsteady-state elasticity is higher than that of the steady-state elasticity. Unsteady-state streamflow coefficients show significant linear correlation with catchment properties, such as the average slope, average elevation, and catchment area. This study provides a new analytical approach to investigate the interannual stability of catchments with varying climate and catchment properties.

54 ENVIRONMENTAL SCIENCES↗

CMU DeepLens: deep learning for automatic image-based galaxy–galaxy strong lens finding

Galaxy-scale strong gravitational lensing can not only provide a valuable probe of the dark matter distribution of massive galaxies, but also provide valuable cosmological constraints, either by studying the population of strong lenses or by measuring time delays in lensed quasars. Due to the rarity of galaxy-scale strongly lensed systems, fast and reliable automated lens finding methods will be essential in the era of large surveys such as Large Synoptic Survey Telescope, Euclid and Wide-Field Infrared Survey Telescope. To tackle this challenge, we introduce CMU DeepLens, a new fully automated galaxy-galaxy lens finding method based on deep learning. This supervised machine learning approach does not require any tuning after the training step which only requires realistic image simulations of strongly lensed systems. We train and validate our model on a set of 20 000 LSST-like mock observations including a range of lensed systems of various sizes and signal-to-noise ratios (S/N). We find on our simulated data set that for a rejection rate of non-lenses of 99 per cent, a completeness of 90 per cent can be achieved for lenses with Einstein radii larger than 1.4 arcsec and S/N larger than 20 on individual g-band LSST exposures. Finally, we emphasize the importance of realistically complex simulations for training such machine learning methods by demonstrating that the performance of models of significantly different complexities cannot be distinguished on simpler simulations. We make our code publicly available at https://github.com/McWilliamsCenter/CMUDeepLens.

gravitational lensing: strong↗

Study of SIDIS Unpolarized Cross Sections from a 3 He Target with the Solenoidal Large Intensity Device at JLab

In this paper we present a detailed impact study of semi-inclusive deep inelastic scattering unpolarized cross sections' measurements using the proposed SoLID apparatus at Jefferson Lab. This type of data, collected at large Bjorken $x_{bj}$, moderate values of $Q^2$ and small values of the transverse momentum of produced hadrons, $P_{hT}$, allows to study transverse momentum dependent (TMD) parton distribution and fragmentation functions in a still poorly explored region. We present the projected results for charged light mesons based on simulated data. For the azimuthal-angle integrated cross sections we adopt the TMD framework up to the next-to-next-to-next-to-leading-logarithmic (N3LL) accuracy, while a simpler TMD parton model is employed for the study of azimuthal angular dependencies.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Effects of small variations of speed of sound in optoacoustic tomographic imaging

Purpose: Speed of sound difference in the imaged object and surrounding coupling medium may reduce the resolution and overall quality of optoacoustic tomographic reconstructions obtained by assuming a uniform acoustic medium. In this work, the authors investigate the effects of acoustic heterogeneities and discuss potential benefits of accounting for those during the reconstruction procedure. Methods: The time shift of optoacoustic signals in an acoustically heterogeneous medium is studied theoretically by comparing different continuous and discrete wave propagation models. A modification of filtered back-projection reconstruction is subsequently implemented by considering a straight acoustic rays model for ultrasound propagation. The results obtained with this reconstruction procedure are compared numerically and experimentally to those obtained assuming a heuristically fitted uniform speed of sound in both full-view and limited-view optoacoustic tomography scenarios. Results: The theoretical analysis showcases that the errors in the time-of-flight of the signals predicted by considering the straight acoustic rays model tend to be generally small. When using this model for reconstructing simulated data, the resulting images accurately represent the theoretical ones. On the other hand, significant deviations in the location of the absorbing structures are found when using a uniform speed of sound assumption. The experimental results obtained with tissue-mimicking phantoms and a mouse postmortem are found to be consistent with the numerical simulations. Conclusions: Accurate analysis of effects of small speed of sound variations demonstrates that accounting for differences in the speed of sound allows improving optoacoustic reconstruction results in realistic imaging scenarios involving acoustic heterogeneities in tissues and surrounding media.

60 APPLIED LIFE SCIENCES↗

SIDIS Unpolarized Cross Sections from a 3 He Target with the Solenoidal Large Intensity Device at JLab

In this paper we present a detailed impact study of semi-inclusive deep inelastic scattering unpolarized cross sections' measurements using the proposed SoLID apparatus at Jefferson Lab. This type of data, collected at large Bjorken x bj , moderate values of Q 2 and small values of the transverse momentum of produced hadrons, P hT , allows to study transverse momentum dependent (TMD) parton distribution and fragmentation functions in a still poorly explored region. We present the projected results for charged light mesons based on simulated data. For the azimuthal-angle integrated cross sections we adopt the TMD framework up to the next-to-next-to-next-to-leading-logarithmic accuracy, while a simpler TMD parton model is employed for the study of azimuthal angular dependencies.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Use of the thin sheath approximation for obtaining ion temperatures from the ISEE 1 limited aperture RPA

A procedure for analyzing low-energy (less than approximately 100 eV) ion data from the plasma composition experiment on ISEE 1 is set forth. The method is based on a derived analytic expression for particle flux to a limited aperture retarding potential analyzer (RPA) in the thin sheath approximation, which makes allowance for some effects of a charged spacecraft on plasma particle trajectories. Calculations using simulated data are employed in testing the efficacy and accuracy of the technique. On the basis of an analysis of these calculation results and the mathematical model, the method is seen as being able to provide accurate ion temperatures from all good plasmaspheric RPA data. It is noted that corresponding densities and spacecraft potentials should be accurate when spacecraft potentials are negative but that they are subject to error for positive spacecraft potentials, particularly when ion Mach numbers are much less than 1. An analysis of data from a representative ISEE 1 pass produces a plasmasphere temperature profile that is consistent in overall structure with previous observations.

Comfort, R. H.↗

Systematic characterization of protein folding pathways using diffusion maps: Application to Trp-cage miniprotein

Understanding the mechanisms by which proteins fold from disordered amino-acid chains to spatially ordered structures remains an area of active inquiry. Molecular simulations can provide atomistic details of the folding dynamics which complement experimental findings. Conventional order parameters, such as root-mean-square deviation and radius of gyration, provide structural information but fail to capture the underlying dynamics of the protein folding process. It is therefore advantageous to adopt a method that can systematically analyze simulation data to extract relevant structural as well as dynamical information. The nonlinear dimensionality reduction technique known as diffusion maps automatically embeds the high-dimensional folding trajectories in a lower-dimensional space from which one can more easily visualize folding pathways, assuming the data lie approximately on a lower-dimensional manifold. The eigenvectors that parametrize the low-dimensional space, furthermore, are determined systematically, rather than chosen heuristically, as is done with phenomenological order parameters. We demonstrate that diffusion maps can effectively characterize the folding process of a Trp-cage miniprotein. By embedding molecular dynamics simulation trajectories of Trp-cage folding in diffusion maps space, we identify two folding pathways and intermediate structures that are consistent with the previous studies, demonstrating that this technique can be employed as an effective way of analyzing and constructing protein folding pathways from molecular simulations.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Avalanche statistics from data with low time resolution

Extracting avalanche distributions from experimental microplasticity data can be hampered by limited time resolution. We compute the effects of low time resolution on avalanche size distributions and give quantitative criteria for diagnosing and circumventing problems associated with low time resolution. We show that traditional analysis of data obtained at low acquisition rates can lead to avalanche size distributions with incorrect power-law exponents or no power-law scaling at all. Furthermore, we demonstrate that it can lead to apparent data collapses with incorrect power-law and cutoff exponents. We propose new methods to analyze low-resolution stress-time series that can recover the size distribution of the underlying avalanches even when the resolution is so low that naive analysis methods give incorrect results. We test these methods on both downsampled simulation data from a simple model and downsampled bulk metallic glass compression data and find that the methods recover the correct critical exponents.

97 MATHEMATICS AND COMPUTING↗

A rheological model for loose sands with insights from DEM

A rheological model for loose granular media is developed to capture both solid-like and fluid-like responses during shearing. The proposed model is built by following the mathematical structure of an extended Kelvin–Voigt model, where an elastic spring and plastic slider act in parallel to a viscous damper. This arrangement requires the partition of the total stress into rate-independent and rate-dependent stress components. To model the solid-like behavior, a simple frictional plasticity model is adopted without modifications, thus contributing to the rate-independent stress. Instead, the fluid-like or rate-dependent stress is further decomposed into deviatoric and volumetric parts, by proposing a new formulation based on a combination of the μ(I) relation, originally developed under pressure-controlled shear, with a pressure-shear rate relation derived under volume-controlled shear. The proposed formulation allows the model to capture both the increase in the friction coefficient and the enhanced dilation at high shear rates. High-fidelity simulation data, obtained from discrete element method and multiscale modelling, are used to evaluate the performance of the proposed constitutive model. The model provides accurate results under both drained and undrained simple shear paths across a wide range of shear rates. Furthermore, it successfully reproduces at much lower computational cost the flowslide mobility computed through multiscale simulations, which is primarily regulated by the shear rate dependence of the material properties during the dynamic runout stage.

Elasticity↗

Cross-correlation analysis of X-ray photon correlation spectroscopy to extract rotational diffusion coefficients

Coefficients for translational and rotational diffusion characterize the Brownian motion of particles. Emerging X-ray photon correlation spectroscopy (XPCS) experiments probe a broad range of length scales and time scales and are well-suited for investigation of Brownian motion. While methods for estimating the translational diffusion coefficients from XPCS are well-developed, there are no algorithms for measuring the rotational diffusion coefficients based on XPCS, even though the required raw data are accessible from such experiments. In this paper, we propose angular-temporal cross-correlation analysis of XPCS data and show that this information can be used to design a numerical algorithm (Multi-Tiered Estimation for Correlation Spectroscopy [MTECS]) for predicting the rotational diffusion coefficient utilizing the cross-correlation: This approach is applicable to other wavelengths beyond this regime. We verify the accuracy of this algorithmic approach across a range of simulated data.

97 MATHEMATICS AND COMPUTING↗

Remote sensing of earth terrain

In remote sensing, the encountered geophysical media such as agricultural canopy, forest, snow, or ice are inhomogeneous and contain scatters in a random manner. Furthermore, weather conditions such as fog, mist, or snow cover can intervene the electromagnetic observation of the remotely sensed media. In the modelling of such media accounting for the weather effects, a multi-layer random medium model has been developed. The scattering effects of the random media are described by three-dimensional correlation functions with variances and correlation lengths corresponding to the fluctuation strengths and the physical geometry of the inhomogeneities, respectively. With proper consideration of the dyadic Green's function and its singularities, the strong fluctuation theory is used to calculate the effective permittivities which account for the modification of the wave speed and attenuation in the presence of the scatters. The distorted Born approximation is then applied to obtain the correlations of the scattered fields. From the correlation of the scattered field, calculated is the complete set of scattering coefficients for polarimetric radar observation or brightness temperature in passive radiometer applications. In the remote sensing of terrestrial ecosystems, the development of microwave remote sensing technology and the potential of SAR to measure vegetation structure and biomass have increased effort to conduct experimental and theoretical researches on the interactions between microwave and vegetation canopies. The overall objective is to develop inversion algorithms to retrieve biophysical parameters from radar data. In this perspective, theoretical models and experimental data are methodically interconnected in the following manner: Due to the complexity of the interactions involved, all theoretical models have limited domains of validity; the proposed solution is to use theoretical models, which is validated by experiments, to establish the region in which the radar response is most sensitive to the parameters of interest; theoretically simulated data will be used to generate simple invertible models over the region. For applications to the remote sensing of sea ice, the developed theoretical models need to be tested with experimental measurements. With measured ground truth such as ice thickness, temperature, salinity, and structure, input parameters to the theoretical models can be obtained to calculate the polarimetric scattering coefficients for radars or brightness temperature for radiometers and then compare theoretical results with experimental data. Validated models will play an important role in the interpretation and classification of ice in monitoring global ice cover from space borne remote sensors in the future. We present an inversion algorithm based on a recently developed inversion method referred to as the Renormalized Source-Type Integral Equation approach. The objective of this method is to overcome some of the limitations and difficulties of the iterative Born technique. It recasts the inversion, which is nonlinear in nature, in terms of the solution of a set of linear equations; however, the final inversion equation is still nonlinear. The derived inversion equation is an exact equation which sums up the iterative Neuman (or Born) series in a closed form and, thus, is a valid representation even in the case when the Born series diverges; hence, the name Renormalized Source-Type Integral Equation Approach.

Yueh, Herng-Aung↗

Engineering of Data Acquiring Mobile Software and Sustainable End-User Applications

The criteria for which data acquiring software and its supporting infrastructure should be designed should take the following two points into account: the reusability and organization of stored online and remote data and content, and an assessment on whether abandoning a platform optimized design in favor for a multi-platform solution significantly reduces the performance of an end-user application. Furthermore, in-house applications that control or process instrument acquired data for end-users should be designed with a communication and control interface such that the application's modules can be reused as plug-in modular components in greater software systems. The application of the above mentioned is applied using two loosely related projects: a mobile application, and a website containing live and simulated data. For the intelligent devices mobile application AIDM, the end-user interface have a platform and data type optimized design, while the database and back-end applications store this information in an organized manner and manage access to that data to only to authorized user end application(s). Finally, the content for the website was derived from a database such that the content can be included and uniform to all applications accessing the content. With these projects being ongoing, I have concluded from my research that the applicable methods presented are feasible for both projects, and that a multi-platform design for the mobile application only marginally drop the performance of the mobile application.

Smith, Benton T.↗