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At least 1,225 records · Page 68

Mechanism of glycoform specificity and in vivo protection by an anti-afucosylated IgG nanobody

Abstract Immunoglobulin G (IgG) antibodies contain a complex N -glycan embedded in the hydrophobic pocket between its heavy chain protomers. This glycan contributes to the structural organization of the Fc domain and determines its specificity for Fcγ receptors, thereby dictating distinct cellular responses. The variable construction of this glycan structure leads to highly-related, but non-equivalent glycoproteins known as glycoforms. We previously reported synthetic nanobodies that distinguish IgG glycoforms. Here, we present the structure of one such nanobody, X0, in complex with the Fc fragment of afucosylated IgG1. Upon binding, the elongated CDR3 loop of X0 undergoes a conformational shift to access the buried N -glycan and acts as a ‘glycan sensor’, forming hydrogen bonds with the afucosylated IgG N -glycan that would otherwise be sterically hindered by the presence of a core fucose residue. Based on this structure, we designed X0 fusion constructs that disrupt pathogenic afucosylated IgG1-FcγRIIIa interactions and rescue mice in a model of dengue virus infection.

59 BASIC BIOLOGICAL SCIENCES↗

Prediction on X-ray output of free electron laser based on artificial neural networks

Abstract Knowledge of x-ray free electron lasers’ (XFELs) pulse characteristics delivered to a sample is crucial for ensuring high-quality x-rays for scientific experiments. XFELs’ self-amplified spontaneous emission process causes spatial and spectral variations in x-ray pulses entering a sample, which leads to measurement uncertainties for experiments relying on multiple XFEL pulses. Accurate in-situ measurements of x-ray wavefront and energy spectrum incident upon a sample poses challenges. Here we address this by developing a virtual diagnostics framework using an artificial neural network (ANN) to predict x-ray photon beam properties from electron beam properties. We recorded XFEL electron parameters while adjusting the accelerator’s configurations and measured the resulting x-ray wavefront and energy spectrum shot-to-shot. Training the ANN with this data enables effective prediction of single-shot or average x-ray beam output based on XFEL undulator and electron parameters. This demonstrates the potential of utilizing ANNs for virtual diagnostics linking XFEL electron and photon beam properties.

47 OTHER INSTRUMENTATION↗

Ion trap long-range XY model for quantum state transfer and optimal spatial search

Abstract Linear ion trap chains are a promising platform for quantum computation and simulation. The XY model with long-range interactions can be implemented with a single side-band Mølmer–Sørensen scheme, giving interactions that decay as 1 / r α , where α parameterises the interaction range. Lower α leads to longer range interactions, allowing faster long-range gate operations for quantum computing. However, decreasing α causes an increased generation of coherent phonons and appears to dephase the effective XY interaction model. We characterise and show how to correct for this effect completely, allowing lower α interactions to be coherently implemented. Ion trap chains are thus shown to be a viable platform for spatial quantum search in optimal O ( N ) time, for N ions. Finally, we introduce a O ( N ) quantum state transfer protocol, with a qubit encoding that maintains a high fidelity.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Prediction of Substrate Distortion in Powder DED Using Finite Element Model

Abstract Leveraging the capabilities of both additive and subtractive manufacturing to repair tooling and other high value items can result in significant cost and time saving opportunities. However, when dimensional accuracy of the repaired component must be held within a specified tolerance, distortion of the component induced during repair can lead to an out of specification final component. This work presents simulation of a novel method to mitigate part distortion using sacrificial support structures. A blown powder directed energy deposition system was utilized for deposition of sacrificial support structures and clad surface depositions. Sacrificial support structures were deposited on the underside of the substrate with varying geometries prior to clad surface depositions. A finite element model was developed and verified using experimental results. The simulation and experimental control results were found to match within 6%. It has been shown that simulation can be used to predict effects of sacrificial support structures on substrate distortion in a blown powder directed energy deposition process.

Burl, Alan G.↗

Theoretical analysis of QOOH combustion reaction pathways

QOOH radicals are key intermediates in the chain of reactions leading to the autoignition of hydrocarbons and oxygenated organic compounds. They are thought to undergo two main reactions: OH elimination to form a cyclic ether and HO2 elimination to form an alkene. However, theoretical analysis of various substituted hydroperoxyalkyl radicals has found two new pathways: OH transfer and internal H abstraction assisted OH elimination. To determine the importance of these new pathways, their barrier heights for several substituted alkanes were calculated using various quantum chemical theories and compared to those of the well-known pathways. Several cases revealed possible competition with the well-known pathways. Rate coefficients were calculated for propyl systems but further studies will need to complete rate coefficients and branching fractions for all systems analyzed to understand these new reactions’ role in autoignition.

33 ADVANCED PROPULSION SYSTEMS↗

Comparative study of A-site order in the lead-free bismuth titanates M{sub 1/2}Bi{sub 1/2}TiO{sub 3} (M=Li, Na, K, Rb, Cs, Ag, Tl) from first-principles

We investigate the possibility of enhancing chemical order in the relaxor ferroelectric Na{sub 1/2}Bi{sub 1/2}TiO{sub 3} upon substitution of Na{sup +} by other monovalent cations M{sup +} using total energy calculations based on density functional theory. All chemically available monovalent cations M{sup +}, which are Li, Na, Ag, K, Tl, Rb and Cs, are considered and an analysis of the structurally relaxed structures in terms of symmetry-adapted distortion modes is given in order to quantify the chemically induced structural distortions. We demonstrate that the replacement of Na{sup +} by other monovalent cations can hardly alter the tendency of chemical order with respect to Na{sub 1/2}Bi{sub 1/2}TiO{sub 3}. Only Tl{sub 1/2}Bi{sub 1/2}TiO{sub 3} and Ag{sub 1/2}Bi{sub 1/2}TiO{sub 3} show enhanced tendency for chemical ordering. Both heavy metals behave similar to the light alkali metals in terms of structural relaxations and relative stabilities of the ordered configurations. Although a comparison of the Goldschmidt factors of components (M TiO{sub 3}){sup −} reveals for Tl a value above the upper stability limit for perovskites, the additional lone-pair effect of Tl{sup +} stabilizes the ordered structure. - Graphical abstract: Amplitudes of chemically induced distortion modes in different ordered perovskites M{sub 1/2}Bi{sub 1/2}TiO{sub 3} and visualisation of atomic displacements associated with distortion mode X{sup +}{sub 1} in the 001-ordered compounds Li{sub 1/2}Bi{sub 1/2}TiO{sub 3} and Cs{sub 1/2}Bi{sub 1/2}TiO{sub 3}. Due to a substantial size mismatch between bismuth (green) and caesium (dark blue), incorporation of the latter leads to enhanced displacements of oxygen atoms (red) and suppresses displacements of titanium (silver) as compared to lithium (light blue) or other smaller monovalent cations. - Highlights: • Lead-free A-site mixed bismuth titanates M{sub 1/2}Bi{sub 1/2}TiO{sub 3} are studied by first-principles calculations. • Investigation of chemical ordering tendency for M=Li, Na, K, Rb, Cs, Ag, and Tl. • Group theoretical analysis of different ordered structures. • Ag and Tl compounds are the most promising candidates for study of chemical order dependent ferroelectric properties.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Transformations of lead 1,3-propylenediaminetetraacetate to its MOF products for the selective adsorption of methanol

Water soluble coordination polymer of potassium lead 1,3-propylenediaminetetraacetate {K_4[Pb_2(1,3-pdta)_2]·6H_2O}{sub n} (1) and its insoluble products {[Pb(1,3-H_2pdta)(H_2O)]·2H_2O}{sub n} (2), {[Pb_2(1,3-pdta)(H_2O)_4]·4H_2O}{sub n} (3) and [Pb{sub 2}(1,3-pdta)(H{sub 2}O){sub 2}]{sub n} (4) were obtained from the direct reactions of lead nitrate with 1,3-propylenediaminetetraacetic acid in different conditions (1,3-H{sub 4}pdta=1,3-propylenediaminetetraacetic acid). The former 1 could be converted to the insoluble products of {[Pb_2(1,3-pdta)(H_2O)_4]·4H_2O}{sub n} (3) and [Pb{sub 2}(1,3-pdta)(H{sub 2}O){sub 2}]{sub n} (4) in weak acidic solution. The complexes have been full characterized by EA, FT-IR, solution and solid state {sup 13}C NMR spectra, thermogravimetric and structural analyses. Interestingly, 3 contains a unique (H{sub 2}O){sub 26} cluster and a 5.2 Å pore after eliminating the guest water molecules, which exhibits reversible adsorption for methanol. This is confirmed by PXRD and solid state {sup 13}C NMR analyses. Nano-confined methanol in microporous structure has been observed based on the large downfield shift of {sup 13}C NMR signal (Δδ 9.72 ppm), attributing to the methyl group in methanol. - Graphical abstract: Water soluble coordination polymer K{sub 4n}[Pb{sub 2}(1,3-pdta){sub 2}]{sub n}·6nH{sub 2}O (1) is converted to its insoluble product [Pb{sub 2}(1,3-pdta)(H{sub 2}O){sub 4}]{sub n}·4nH{sub 2}O (3), which contains a unique (H{sub 2}O){sub 26} cluster and exhibits reversible adsorption for methanol. - Highlights: • Water-soluble coordination polymer was constructed by lead propylenediaminetetraacetate. • Its MOF product has a unique (H{sub 2}O){sub 26} cluster. • The product exhibits reversible adsorption for methanol.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Biases in southern hemisphere climate trends induced by coarsely specifying the temporal resolution of stratospheric ozone

Abstract Global climate models that do not include interactive middle atmosphere chemistry, such as most of those contributing to the Coupled Model Intercomparison Project Phase 5, typically specify stratospheric ozone using monthly mean, zonal mean values and linearly interpolate to the time resolution of the model. We show that this method leads to significant biases in the simulated climate of the southern hemisphere (SH) over the late twentieth century. Previous studies have attributed similar biases in simulated SH climate change to the effect of the spatial smoothing of the specified ozone, i.e., to using zonal mean concentrations. We here show that the bias in climate trends due to undersampling of the rapid temporal changes in ozone during the seasonal evolution of the Antarctic ozone hole is considerable and reaches all the way into the troposphere. Our results suggest that the bias can be substantially reduced by specifying daily ozone concentrations.

Neely, III, R. R.↗

Evidence of Directional Structural Superlubricity and Lévy Flights in a van der Waals Heterostructure

Abstract Structural superlubricity is a special frictionless contact in which two crystals are in incommensurate arrangement such that relative in‐plane translation is associated with vanishing energy barrier crossing. So far, it has been realized in multilayer graphene and other van der Waals (2D crystals with hexagonal or triangular crystalline symmetries, leading to isotropic frictionless contacts. Directional structural superlubricity, to date unrealized in 2D systems, is possible when the reciprocal lattices of the two crystals coincide in one direction only. Here, directional structural superlubricity a α‐bismuthene/graphite van der Waals system is evidenced, manifested by spontaneous hopping of the islands over hundreds of nanometers at room temperature, resolved by low‐energy electron microscopy and supported by registry simulations. Statistical analysis of individual and collective α‐bismuthene islands populations reveal a heavy‐tailed distribution of the hopping lengths and sticking times indicative of Lévy flight dynamics, largely unobserved in condensed‐matter systems.

Le Ster, Maxime↗

Higher derivative corrections to the entropic force from holography

Highlights: • We study higher derivative corrections to the entropic force from AdS/CFT. • We discuss how the entropic force changes with the shear viscosity to entropy density ratio at strong coupling. - Abstract: The entropic force has been recently argued to be responsible for dissociation of heavy quarkonia. In this paper, we analyze R{sup 2} corrections and R{sup 4} corrections to the entropic force, respectively. It is shown that for R{sup 2} corrections, increasing λ{sub GB} (Gauss–Bonnet factor) leads to increasing the entropic force. While for R{sup 4} corrections, increasing λ (’t Hooft coupling) leads to decreasing the entropic force. Also, we discuss how the entropic force changes with the shear viscosity to entropy density ratio, η∕s, at strong coupling.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Electronic optics in graphene in the semiclassical approximation

Highlights: • A rigorous semiclassical theory for the two-dimensional Dirac equation is developed. • We discuss how the use of eikonal coordinates greatly simplifies the theory. • Electronic optics in graphene is developed beyond the standard WKB approximation. • The semiclassical phase essentially affects electron focusing in graphene. - Abstract: We study above-barrier scattering of Dirac electrons by a smooth electrostatic potential combined with a coordinate-dependent mass in graphene. We assume that the potential and mass are sufficiently smooth, so that we can define a small dimensionless semiclassical parameter h≪1. This electronic optics setup naturally leads to focusing and the formation of caustics, which are singularities in the density of trajectories. We construct a semiclassical approximation for the wavefunction in all points, placing particular emphasis on the region near the caustic, where the maximum of the intensity lies. Because of the matrix character of the Dirac equation, this wavefunction contains a nontrivial semiclassical phase, which is absent for a scalar wave equation and which influences the focusing. We carefully discuss the three steps in our semiclassical approach: the adiabatic reduction of the matrix equation to aneffective scalar equation, the construction of the wavefunction using the Maslov canonical operator and the application of the uniform approximation to the integral expression for the wavefunction in the vicinity of a caustic. We consider several numerical examples and show that our semiclassical results are in very good agreement with the results of tight-binding calculations. In particular, we show that the semiclassical phase can have a pronounced effect on the position of the focus and its intensity.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Mean-field construction for spectrum of one-dimensional Bose polaron

Highlights: •An efficient path-integral formulation of the Bose polaron problem is proposed. •The spectrum of an impurity moving in 1D Bose gas is given by analytic formula. •The effective-mass approximation reproduces well the exact Bose polaron spectrum. -- Abstract: The full momentum dependence of spectrum of a point-like impurity immersed in a dilute one-dimensional Bose gas is calculated on the mean-field level. In particular we elaborate, to the finite-momentum Bose polaron, the path-integral approach whose semi-classical approximation leads to the conventional mean-field treatment of the problem while quantum corrections can be easily accounted by standard loop expansion techniques. The extracted low-energy parameters of impurity spectrum, namely, the binding energy and the effective mass of particle, are shown to be in qualitative agreement with the results of quantum Monte Carlo simulations.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

bantam miRNA is important for Drosophila blood cell homeostasis and a regulator of proliferation in the hematopoietic progenitor niche

Highlights: • bantam miRNA is endogenously expressed in the hematopoietic progenitor niche. • bantam is necessary and sufficient to induce cellular proliferation in the PSC. • bantam is upstream of the Insulin Receptor signaling pathway. • A model for positive regulation of hematopoietic niche growth is proposed. - Abstract: The Drosophila hematopoietic system is utilized in this study to gain novel insights into the process of growth control of the hematopoietic progenitor niche in blood development. The niche microenvironment is an essential component controlling the balance between progenitor populations and differentiated, mature blood cells and has been shown to lead to hematopoietic malignancies in humans when misregulated. MicroRNAs are one class of regulators associated with blood malignancies; however, there remains a relative paucity of information about the role of miRNAs in the niche. Here we demonstrate that bantam miRNA is endogenously active in the Drosophila hematopoietic progenitor niche, the posterior signaling center (PSC), and functions in the primary hematopoietic organ, the lymph gland, as a positive regulator of growth. Loss of bantam leads to a significant reduction in the PSC and overall lymph gland size, as well as a loss of the progenitor population and correlative premature differentiation of mature hemocytes. Interestingly, in addition to being essential for proper lymph gland development, we have determined bantam to be a novel upstream component of the insulin signaling cascade in the PSC and have unveiled dMyc as one factor central to bantam activity. These important findings identify bantam as a new hematopoietic regulator, place it in an evolutionarily conserved signaling pathway, present one way in which it is regulated, and provide a mechanism through which it facilitates cellular proliferation in the hematopoietic niche.

60 APPLIED LIFE SCIENCES↗

Spin glass behavior in the Dy{sub 3-x}Y{sub x}TaO{sub 7} (0≤x≤1) system

Several x-compositions of the polycrystalline Dy{sub 3−x}Y{sub x}TaO{sub 7} system, crystallizing in the weberite-type structure, were synthesized and structurally characterized using Rietveld refinements based on X-ray diffraction data. In previous magnetic characterization of Dy{sub 3}TaO{sub 7} (x=0), with the same crystal structure, an antiferromagnetic transition at T=2.3 K has been assigned to this compound. On the basis of DC and AC magnetic susceptibilities analyses, we show in this work that all compounds in the range of 0≤x≤1.0 exhibit a spin glass behavior. The nature of the spin glass behavior in Dy{sub 3−x}Y{sub x}TaO{sub 7}, can be attributed to the highly frustrated antiferromagnetic interaction of the Dy{sup 3+} sublattice and to the Dy{sup 3+}–Dy{sup 3+} distorted tetrahedra array in the weberite-type structure of this system. By fitting AC susceptibility data, using dynamical scaling theory equations, we conclude that a cluster spin glass is present in Dy{sub 3−x}Y{sub x}TaO{sub 7} in the low temperature range. Depending on the x-composition, T{sub g}∼2.2–3.2 K. In the range 15–300 K the system obeys a Curie–Weiss magnetic behavior. - Graphical abstract: Weberite-type crystal structure of the Dy{sub 3−x}Y{sub x}TaO{sub 7} compounds. In this structure the magnetic sublattice is formed by Dy{sup 3+} cations in an arrangement of distorted tetrahedra at the second-nearest neighbor site; this arrangement suggests geometric frustration that leads to a spin glass behavior. - Highlights: • Spin glass of Dy{sub 3−x}Y{sub x}TaO{sub 7} is associated to highly frustrated AFM interaction. • Quasi-one-dimensional feature of the crystal structure. • Suggest the existence of a cluster spin glass in Dy{sub 3−x}Y{sub x}TaO{sub 7}. • Dy{sub 3−x}Y{sub x}TaO{sub 7} system (x=0.33, 0.66, and 1.0) also display spin glass behavior.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

The effect of Si on the microstructure and mechanical properties of spark plasma sintered boron carbide

Highlights: • Si addition leads to a dense final product at a low sintering temperature. • The added Si preferentially formed SiC and borosilicate glass instead of replacing the chain atoms in boron carbide. • The hardness of our Si-containing boron carbide is 30–35% greater than currently in-use commercial boron carbide plates. - Abstract: Fully dense boron carbide discs were achieved by spark plasma sintering boron carbide powders with 10 wt% silicon. The silicon did not diffuse into boron carbide grains to produce a solid solution of Si-doped boron carbide; instead the silicon reacted with impurities in the starting powder to form β-SiC and borosilicate glass. The resultant new phases facilitated densification of the multiphase ceramic through liquid phase-assisted sintering. The resultant material exhibits improved hardness (34.3 GPa Vikers hardness under 1 kg load) with toughness comparable to both Si-free and commercially available boron carbide.

36 MATERIALS SCIENCE↗

Control of gallium incorporation in sol–gel derived CuIn{sub (1−x)}Ga{sub x}S{sub 2} thin films for photovoltaic applications

Highlights: • CuIn{sub (1−x)}Ga{sub x}S{sub 2} thin films were prepared by sol–gel process. • Evolution of lattice parameters is characteristic of a solid solution. • Optical band gap was found to be linearly dependent on the gallium rate. - Abstract: In this paper, we report the elaboration of Cu(In,Ga)S{sub 2} chalcopyrite thin films via a sol–gel process. To reach this aim, solutions containing copper, indium and gallium complexes were prepared. These solutions were thereafter spin-coated onto the soda lime glass substrates and calcined, leading to metallic oxides thin films. Expected chalcopyrite films were finally obtained by sulfurization of oxides layers using a sulfur atmosphere at 500 °C. The rate of gallium incorporation was studied both at the solutions synthesis step and at the thin films sulfurization process. Elemental and X-ray diffraction (XRD) analyses have shown the efficiency of monoethanolamine used as a complexing agent for the preparation of CuIn{sub (1−x)}Ga{sub x}S{sub 2} thin layers. Moreover, the replacement of diethanolamine by monoethanolamine has permitted the substitution of indium by isovalent gallium from x = 0 to x = 0.4 and prevented the precipitation of copper derivatives. XRD analyses of sulfurized thin films CuIn{sub (1−x)}Ga{sub x}S{sub 2,} clearly indicated that the increasing rate of gallium induced a shift of XRD peaks, revealing an evolution of the lattice parameter in the chalcopyrite structure. These results were confirmed by Raman analyses. Moreover, the optical band gap was also found to be linearly dependent upon the gallium rate incorporated within the thin films: it varies from 1.47 eV for x = 0 to 1.63 eV for x = 0.4.

36 MATERIALS SCIENCE↗