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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 1,225 records · Page 68
All sourcesNASA NTRSDOE OSTI
DOE OSTI2017

Temporal Genetic Dynamics of an Experimental, Biparental Field Population of Phytophthora capsici

Defining the contributions of dispersal, reproductive mode, and mating system to the population structure of a pathogenic organism is essential to estimating its evolutionary potential. After introduction of the devastating plant pathogen, Phytophthora capsici, into a grower’s field, a lack of aerial spore dispersal restricts migration. Once established, coexistence of both mating types results in formation of overwintering recombinant oospores, engendering persistent pathogen populations. To mimic these conditions, in 2008, we inoculated a field with two P. capsici isolates of opposite mating type. We analyzed pathogenic isolates collected in 2009–2013 from this experimental population, using genome-wide single-nucleotide polymorphism markers. By tracking heterozygosity across years, we show that the population underwent a generational shift; transitioning from exclusively F1 in 2009–2010, to multi-generational in 2011, and ultimately all inbred in 2012–2013. Survival of F1 oospores, characterized by heterozygosity excess, coupled with a low rate of selfing, delayed declines in heterozygosity due to inbreeding and attainment of equilibrium genotypic frequencies. Large allele and haplotype frequency changes in specific genomic regions accompanied the generational shift, representing putative signatures of selection. Finally, we identified an approximately 1.6 Mb region associated with mating type determination, constituting the first detailed genomic analysis of a mating type region (MTR) in Phytophthora. Segregation patterns in the MTR exhibited tropes of sex-linkage, where maintenance of allele frequency differences between isolates of opposite mating type was associated with elevated heterozygosity despite inbreeding. Characterizing the trajectory of this experimental system provides key insights into the processes driving persistent, sexual pathogen populations.

bottleneck↗
DOE OSTI2019

Wavelet-Based Genomic Signal Processing for Centromere Identification and Hypothesis Generation

Various ‘omics data types have been generated for Populus trichocarpa , each providing a layer of information which can be represented as a density signal across a chromosome. We make use of genome sequence data, variants data across a population as well as methylation data across 10 different tissues, combined with wavelet-based signal processing to perform a comprehensive analysis of the signature of the centromere in these different data signals, and successfully identify putative centromeric regions in P. trichocarpa from these signals. Furthermore, using SNP (single nucleotide polymorphism) correlations across a natural population of P. trichocarpa , we find evidence for the co-evolution of the centromeric histone CENH3 with the sequence of the newly identified centromeric regions, and identify a new CENH3 candidate in P. trichocarpa .

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2021

Intrinsic and Extrinsic Exciton Recombination Pathways in AgInS 2 Colloidal Nanocrystals

Ternary I-III-VI 2 nanocrystals (NCs), such as AgInS 2 and CuInS 2 , are garnering interest as heavy-metal-free materials for photovoltaics, luminescent solar concentrators, LEDs, and bioimaging. The origin of the emission and absorption properties in this class of NCs is still a subject of debate. Recent theoretical and experimental studies revealed that the characteristic Stokes-shifted and long-lived luminescence of stoichiometric CuInS 2 NCs arises from the detailed structure of the valence band featuring two sublevels with different parity. The same valence band substructure is predicted to occur in AgInS 2 NCs, yet no experimental confirmation is available to date. Here, we use complementary spectroscopic, spectro-electrochemical, and magneto-optical investigations as a function of temperature to investigate the band structure and the excitonic recombination mechanisms in stoichiometric AgInS 2 NCs. Transient transmission measurements reveal the signatures of two subbands with opposite parity, and photoluminescence studies at cryogenic temperatures evidence a dark state emission due to enhanced exchange interaction, consistent with the behavior of stoichiometric CuInS 2 NCs. Lowering the temperature as well as applying reducing electrochemical potentials further suppress electron trapping, which represents the main nonradiative channel for exciton decay, leading to nearly 100% emission efficiency.

36 MATERIALS SCIENCE↗
DOE OSTI2017

Source detection at 100 meter standoff with a time-encoded imaging system

Here, we present the design, characterization, and testing of a laboratory prototype radiological search and localization system. The system, based on time-encoded imaging, uses the attenuation signature of neutrons in time, induced by the geometrical layout and motion of the system. We have demonstrated the ability to detect a ~1 mCi 252 Cf radiological source at 100 m standoff with 90% detection efficiency and 10% false positives against background in 12 min. As a result, this same detection efficiency is met at 15 s for a 40 m standoff, and 1.2 s for a 20 m standoff.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗
DOE OSTI2021

Facile One-Pot Nanoproteomics for Label-Free Proteome Profiling of 50–1000 Mammalian Cells

Recent advances in sample preparation enable label-free MS-based proteome profiling of small numbers of mammalian cells. However, specific devices are often required to downscale sample processing volume from the standard 50-200 µL to sub-µL for effective nanoproteomics, which greatly impedes the implementation of current nanoproteomics methods by broad proteomics research community. Here we report a facile one-pot nanoproteomics method termed SOPs-MS (Surfactant-assisted One-Pot sample processing at the standard volume coupled with MS) for convenient proteome profiling of 50-1000 mammalian cells. Building upon our recent development of SOP-MS for label-free single-cell proteomics at low µL volume (Commun Bio 2021, 4, 265), we have systematically evaluated its processing volume at 10-200 µL using 100 human cells for robust reproducible nanoproteomic analysis. The processing volume of 50 µL which is in the range of volume for standard proteomics sample preparation, has been selected for easy sample handling with benchtop micropipette. Using the commonly accessible LC-MS platform, SOPs-MS allows for reliable label-free quantification of ~1200-2700 protein groups from 50-1000 MCF10A cells. When applied to small subpopulations of mouse colon crypt cells, SOPs-MS can reveal distinct protein signatures between any two subpopulation cells with identification of ~1500-2500 protein groups for each subpopulation. SOPs-MS may pave the way for routine deep proteome profiling of small numbers of cells as well as low-input samples.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2022

Polariton Dynamics in Two-Dimensional Ruddlesden–Popper Perovskites Strongly Coupled with Plasmonic Lattices

Strong coupling between light and matter can produce hybrid eigenstates known as exciton-polaritons. Although polariton dynamics are important photophysical properties, the relaxation pathways of polaritons in different coupling regimes have seen limited attention. This paper reports the dynamics of hybridized states from 2D Ruddlesden-Popper perovskites coupled to plasmonic nanoparticle lattices. The open cavity architecture of Al lattices enables the coupling strength to be modulated by varying either the lead halide perovskite film thickness or the superstrate refractive index. Both experiments and finite-difference time-domain simulations of the optical dispersion diagrams showed avoided crossings that are a signature of strong coupling. Furthermore, our analytical model also elucidated the correlation between the exciton/plasmon mixing ratio and polariton coupling strength. Using fs-transient absorption spectroscopy, we found that both the upper and lower polaritons have shorter lifetimes than the excitons and that polaritons can show faster excited state dynamics when they have access to additional energy transfer channels.

2D perovskite↗
DOE OSTI2016

Sequencing wild and cultivated cassava and related species reveals extensive interspecific hybridization and genetic diversity

Cassava (Manihot esculenta) provides calories and nutrition for more than half a billion people. It was domesticated by native Amazonian peoples through cultivation of the wild progenitor M. esculenta ssp. flabellifolia and is now grown in tropical regions worldwide. Here we provide a high-quality genome assembly for cassava with improved contiguity, linkage, and completeness; almost 97% of genes are anchored to chromosomes. We find that paleotetraploidy in cassava is shared with the related rubber tree Hevea, providing a resource for comparative studies. We also sequence a global collection of 58 Manihot accessions, including cultivated and wild cassava accessions and related species such as Ceará or India rubber (M. glaziovii), and genotype 268 African cassava varieties. We find widespread interspecific admixture, and detect the genetic signature of past cassava breeding programs. As a clonally propagated crop, cassava is especially vulnerable to pathogens and abiotic stresses. This genomic resource will inform future genome-enabled breeding efforts to improve this staple crop.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2019

Difficult-to-neutralize global HIV-1 isolates are neutralized by antibodies targeting open envelope conformations

Abstract The HIV-1 envelope (Env) is the target for neutralizing antibodies and exists on the surface of virions in open or closed conformations. Difficult-to-neutralize viruses (tier 2) express Env in a closed conformation antigenic for broadly neutralizing antibodies (bnAbs) but not for third variable region (V3) antibodies. Here we show that select V3 macaque antibodies elicited by Env vaccination can neutralize 26% of otherwise tier 2 HIV-1 isolates in standardized virus panels. The V3 antibodies only bound to Env in its open conformation. Thus, Envs on tier 2 viruses sample a state where the V3 loop is not in its closed conformation position. Envelope second variable region length, glycosylation sites and V3 amino acids were signatures of neutralization sensitivity. This study determined that open conformations of Env with V3 exposed are present on a subset of otherwise neutralization-resistant virions, therefore neutralization of tier 2 HIV-1 does not always indicate bnAb induction.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2020

Identification of durable and non-durable FeN x sites in Fe–N–C materials for proton exchange membrane fuel cells

We report that while Fe–N–C materials are a promising alternative to platinum for catalysing the oxygen reduction reaction in acidic polymer fuel cells, limited understanding of their operando degradation restricts rational approaches towards improved durability. Here we show that Fe–N–C catalysts initially comprising two distinct FeN x sites (S1 and S2) degrade via the transformation of S1 into iron oxides while the structure and number of S2 were unmodified. Structure–activity correlations drawn from end-of-test 57 Fe Mössbauer spectroscopy reveal that both sites initially contribute to the oxygen reduction reaction activity but only S2 substantially contributes after 50 h of operation. From in situ 57 Fe Mössbauer spectroscopy in inert gas coupled to calculations of the Mössbauer signature of FeN x moieties in different electronic states, we identify S1 to be a high-spin FeN 4 C 12 moiety and S2 a low- or intermediate-spin FeN 4 C 10 moiety. These insights lay the groundwork for rational approaches towards Fe–N–C cathodes with improved durability in acidic fuel cells.

36 MATERIALS SCIENCE↗
DOE OSTI2020

Structural features of solid-solid phase transitions and lattice dynamics in U 3 O 8

Triuranium octoxide (U 3 O 8 ) undergoes an orthorhombic to hexagonal structural phase transition near Ts=305°C, and a separate nonstructural phase transition at Tc=210°C. The later transition has previously been associated with temperature-induced fluctuations in the uranium oxidation state. A discontinuity in the slope of electrical conductivity versus temperature measurement at 210°C has supported this idea. The orthorhombic phase has three crystallographic sites in two distinct oxidation configurations [2 U(V) and 1 U(VI)], whereas the hexagonal phase has one distinct uranium site. High-resolution x-ray diffraction measurements eliminate the possibility of superlattice Bragg reflections to less than 0.2 e - scattering power and U 3 O 8 is not metallic; consequently, the presence of oxidation fluctuations is required for charge balancing. Interestingly, the order-to-disorder transition occurs at a much lower temperature than the structural transition. Using temperature-dependent x-ray diffraction and Raman spectroscopy, we show anisotropic lattice expansion in the in-plane b and c lattice constants. A specific discontinuity in the temperature derivatives of the b and c lattice constants are the first reported structural signatures of the order-to-disorder transition, suggestive of a change in local U–O coordination. Phonon frequencies of U 3 O 8 measured by Raman spectroscopy show significant temperature-dependent dynamics. Redshifting of several modes between 40 and 300°C cannot be explained by unit cell expansion alone because the unit cell volume decreases in this region. Instead, we show that phonon frequencies are highly correlated with the anisotropic lattice expansion/contraction along specific crystallographic directions.

36 MATERIALS SCIENCE↗
DOE OSTI2022

Controlling and visualizing Dirac physics in topological semimetal heterostructures

A bulk crystal of cadmium arsenide is a three-dimensional Dirac semimetal, but, in a thin film, it can behave like a three-dimensional topological insulator. This tunability provides unique opportunities to manipulate and explore a topological insulator phase. However, an obstacle to engineering such tunability is the subtlety of transport-based discriminants for topological phases. In this work, the quantum capacitance of cadmium arsenide–based heterostructures provides two direct experimental signatures of three-dimensional topological insulator physics: an insulating three-dimensional bulk and a Landau level at zero energy that does not disperse in a magnetic field. We proceed to join our ability to see these fingerprints of the topological surface states with flexibility afforded by our epitaxial heterostructures to demonstrate a route toward controlling the energy of the Dirac nodes on each surface. These results point to new avenues for engineering topological insulators based on cadmium arsenide.

36 MATERIALS SCIENCE↗
DOE OSTI2019

Diverse tumour susceptibility in Collaborative Cross mice: identification of a new mouse model for human gastric tumourigenesis

Objective: The Collaborative Cross (CC) is a mouse population model with diverse and reproducible genetic backgrounds used to identify novel disease models and genes that contribute to human disease. Since spontaneous tumour susceptibility in CC mice remains unexplored, we assessed tumour incidence and spectrum. Design: We monitored 293 mice from 18 CC strains for tumour development. Genetic association analysis and RNA sequencing were used to identify susceptibility loci and candidate genes. We analysed genomes of patients with gastric cancer to evaluate the relevance of genes identified in the CC mouse model and measured the expression levels of ISG15 by immunohistochemical staining using a gastric adenocarcinoma tissue microarray. Association of gene expression with overall survival (OS) was assessed by Kaplan-Meier analysis. Results: CC mice displayed a wide range in the incidence and types of spontaneous tumours. More than 40% of CC036 mice developed gastric tumours within 1 year. Genetic association analysis identified Nfκb1 as a candidate susceptibility gene, while RNA sequencing analysis of non-tumour gastric tissues from CC036 mice showed significantly higher expression of inflammatory response genes. In human gastric cancers, the majority of human orthologues of the 166 mouse genes were preferentially altered by amplification or deletion and were significantly associated with OS. Higher expression of the CC036 inflammatory response gene signature is associated with poor OS. Finally, ISG15 protein is elevated in gastric adenocarcinomas and correlated with shortened patient OS. Conclusions: CC strains exhibit tremendous variation in tumour susceptibility, and we present CC036 as a spontaneous laboratory mouse model for studying human gastric tumourigenesis.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2023

Elucidating regulatory processes of intense physical activity by multi-omics analysis

Abstract Background Physiological and biochemical processes across tissues of the body are regulated in response to the high demands of intense physical activity in several occupations, such as firefighting, law enforcement, military, and sports. A better understanding of such processes can ultimately help improve human performance and prevent illnesses in the work environment. Methods To study regulatory processes in intense physical activity simulating real-life conditions, we performed a multi-omics analysis of three biofluids (blood plasma, urine, and saliva) collected from 11 wildland firefighters before and after a 45 min, intense exercise regimen. Omics profiles post- versus pre-exercise were compared by Student’s t -test followed by pathway analysis and comparison between the different omics modalities. Results Our multi-omics analysis identified and quantified 3835 proteins, 730 lipids and 182 metabolites combining the 3 different types of samples. The blood plasma analysis revealed signatures of tissue damage and acute repair response accompanied by enhanced carbon metabolism to meet energy demands. The urine analysis showed a strong, concomitant regulation of 6 out of 8 identified proteins from the renin-angiotensin system supporting increased excretion of catabolites, reabsorption of nutrients and maintenance of fluid balance. In saliva, we observed a decrease in 3 pro-inflammatory cytokines and an increase in 8 antimicrobial peptides. A systematic literature review identified 6 papers that support an altered susceptibility to respiratory infection. Conclusion This study shows simultaneous regulatory signatures in biofluids indicative of homeostatic maintenance during intense physical activity with possible effects on increased infection susceptibility, suggesting that caution against respiratory diseases could benefit workers on highly physical demanding jobs.

59 BASIC BIOLOGICAL SCIENCES↗
NASA NTRS2006

Organic and Isotope Measurement Protocols under Development for the 2009 Mars Science Laboratory

The Mars Science Laboratory (MSL) is under development by NASA with several international partners for launch in 2009. MSL is designed to quantitatively explore a local region on Mars as a potential habitat for present or past life (http://mars.jpl.nasa.gov/msl). The goals of MSL are to (1) assess the past or present biological potential of the target environment, (2) to characterize its geology and geochemistry, (3) to study planetary processes that influence habitability, and (4) to characterize the surface radiation. The last substantial search for organic molecules on the surface of Mars was with the Viking Landers in 1976 [Biemann, et al., 19771. In that mission, no organics were detected in near surface fines and presently a more comprehensive search is required to understand the potential of that planet to support life. While the Mars Exploration Rovers are able to identify mineralogical signatures of aqueous alteration, they are not equipped to search for organics. The planned capabilities of the MSL rover payload will enable a search for a wide range of organic molecules in both solid samples of rocks and fines and atmospheric samples. MSL will also provide a determination of definitive mineralogy of the solid samples and precision isotope measurements of several volatile elements. Contact and remote surface and subsurface survey tools will establish context for Analytical Laboratory measurements and will facilitate sample selection. The Sample Analysis at Mars (SAM) suite of MSL addresses several of the mission's core measurement goals. SAM includes a gas chromatograph, a mass spectrometer, and a tunable laser spectrometer. We will describe the range of measurement protocols under development and test for SAM and the relationship of our planned measurements to outstanding issues of martian habitability.

Mahaffy, Paul R.↗
NASA NTRS2011

Hurricane Ike Deposits on the Bolivar Peninsula, Galveston Bay, Texas

In September 2008, Hurricane Ike made landfall on Galveston Bay, close to the NASA Johnson Space Center (JSC). The storm flooded much of the area with a storm surge ranging from 11 -20 feet. The Bolivar peninsula, the southeastern coast of Galveston Bay, experienced the brunt of the surge. Several agencies collected excellent imagery baselines before the storm and complementary data a few days afterward that helped define the impacts of the storm. In April of 2011, a team of scientists and astronauts from JSC conducted field mapping exercises along the Bolivar Peninsula, the section of the Galveston Bay coast most impacted by the storm. Astronauts routinely observe and document coastal changes from orbit aboard the International Space Station. As part of their basic Earth Science training, scientists at the Johnson Space Center take astronauts out for field mapping exercises so that they can better recognize and understand features and processes that they will later observe from the International Space Station. Using pre -storm baseline images of the Bolivar Peninsula near Rollover Pass and Gilchrist (NOAA/Google Earth Imagery and USGS aerial imagery and lidar data), the astronauts mapped current coastline positions at defined locations, and related their findings to specific coastal characteristics, including channel, jetties, and other developments. In addition to mapping, we dug trenches along both the Gulf of Mexico coast as well as the Galveston Bay coast of the Bolivar peninsula to determine the depth of the scouring from the storm on the Gulf side, and the amount of deposition of the storm surge deposits on the Bay side of the peninsula. The storm signature was easy to identify by sharp sediment transitions and, in the case of storm deposits, a layer of storm debris (roof shingles, PVC pipes, etc) and black, organic rich layers containing buried sea grasses in areas that were marshes before the storm. The amount of deposition was generally about 20 -25 cm; the local areas experiencing obvious deposition are readily obvious in post -Ike imagery of the region. We used a March 2010 aerial photograph from the NOAA -Google Earth collection because construction and vegetation recovery was minimal. Based on the before and after aerial imagery and the trenching data collected over two days, we can begin to characterize the material transported and deposited by Hurricane Ike along one stretch of the Bolivar peninsula. We summarize the results from our mapping and trenching data. The basic data collected 2.5 years after the storm are ephemeral as the storm deposits become reworked and overprinted by coastal processes, vegetation regrowth and reconstruction.

Evans, Cynthia A.↗
DOE OSTI2013

MODELING THE LINE-OF-SIGHT INTEGRATED EMISSION IN THE CORONA: IMPLICATIONS FOR CORONAL HEATING

One of the outstanding problems in all of space science is uncovering how the solar corona is heated to temperatures greater than 1 MK. Though studied for decades, one of the major difficulties in solving this problem has been unraveling the line-of-sight (LOS) effects in the observations. The corona is optically thin, so a single pixel measures counts from an indeterminate number (perhaps tens of thousands) of independently heated flux tubes, all along that pixel's LOS. In this paper we model the emission in individual pixels imaging the active region corona in the extreme ultraviolet. If LOS effects are not properly taken into account, erroneous conclusions regarding both coronal heating and coronal dynamics may be reached. We model the corona as an LOS integration of many thousands of completely independently heated flux tubes. We demonstrate that despite the superposition of randomly heated flux tubes, nanoflares leave distinct signatures in light curves observed with multi-wavelength and high time cadence data, such as those data taken with the Atmospheric Imaging Assembly on board the Solar Dynamics Observatory. These signatures are readily detected with the time-lag analysis technique of Viall and Klimchuk in 2012. Steady coronal heating leaves a different and equally distinct signature that is also revealed by the technique.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2017

The potential value of early (1939-1967) upper-air data in atmospheric climate reanalysis

In recent years a number of reanalysis datasets have been published that cover the past century or more, including the ‘Twentieth Century Reanalysis’ 20CRv2 and the European Reanalysis of the twentieth century ERA-20C. These datasets are widely used, showing the need for, and possible benefit of, reanalysis data products designed for climate applications.The twentieth-century reanalyses so far have assimilated only surface observations, and rely on independent estimates of monthly averaged sea-surface temperatures and sea ice concentrations as boundary conditions. While 20CRv2 uses only observations of surface and sea-level pressure, ERA-20C additionally assimilates marine winds.Here we describe an experimental reanalysis, referred to as ERA-PreSAT, which covers the period 1939–1967 and also assimilates historical upper-air data. Assessments of this dataset including comparisons with independent data show that (i) temperature biases in the Northern Hemisphere are largely reduced compared to reanalyses that assimilate surface data only, (ii) concentration of 1940s upper-air data in the northern extra tropics created a strong interhemispheric asymmetry which is likely not realistic, (iii) the forecast skill in the Northern Hemisphere has increased substantially compared to reanalyses that assimilate surface data only, (iv) day-to-day and (in the northern extratropics) month-to-month correlations with independent observations (of total column ozone, upper-air data) increase over time, (v) interannual variability is well captured in the reanalysis, (vi) a signature of the stratospheric Quasi-Biennial Oscillation is present as far back as the 1940s,and (vii) tropical cyclones are not well represented. Furthermore, the generally encouraging results from the experimental ERA-PreSAT reanalysis underline that early upper-air data greatly contribute to our knowledge on the troposphere and lower stratosphere over the twentieth century.

54 ENVIRONMENTAL SCIENCES↗