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At least 1,243 records · Page 69

Accurate determination of genotypic variance of cell wall characteristics of a Populus trichocarpa pedigree using high-throughput pyrolysis-molecular beam mass spectrometry

Abstract Background Pyrolysis-molecular beam mass spectrometry (py-MBMS) analysis of a pedigree of Populus trichocarpa was performed to study the phenotypic plasticity and heritability of lignin content and lignin monomer composition. Instrumental and microspatial environmental variability were observed in the spectral features and corrected to reveal underlying genetic variance of biomass composition. Results Lignin-derived ions (including m/z 124, 154, 168, 194, 210 and others) were highly impacted by microspatial environmental variation which demonstrates phenotypic plasticity of lignin composition in Populus trichocarpa biomass. Broad-sense heritability of lignin composition after correcting for microspatial and instrumental variation was determined to be H 2 = 0.56 based on py-MBMS ions known to derive from lignin. Heritability of lignin monomeric syringyl/guaiacyl ratio ( S / G ) was H 2 = 0.81. Broad-sense heritability was also high (up to H 2 = 0.79) for ions derived from other components of the biomass including phenolics (e.g., salicylates) and C5 sugars (e.g., xylose). Lignin and phenolic ion abundances were primarily driven by maternal effects, and paternal effects were either similar or stronger for the most heritable carbohydrate-derived ions. Conclusions We have shown that many biopolymer-derived ions from py-MBMS show substantial phenotypic plasticity in response to microenvironmental variation in plantations. Nevertheless, broad-sense heritability for biomass composition can be quite high after correcting for spatial environmental variation. This work outlines the importance in accounting for instrumental and microspatial environmental variation in biomass composition data for applications in heritability measurements and genomic selection for breeding poplar for renewable fuels and materials.

09 BIOMASS FUELS↗

Broadband wide-angle absorption enhancement due to mode conversion in cold unmagnetized plasmas with periodic density variations

We study theoretically the mode conversion and the associated resonant absorption of p-polarized electromagnetic waves into longitudinal plasma oscillations in cold, unmagnetized and stratified plasmas with periodic spatial density variations. We consider sinusoidal density configurations for which the frequency band where mode conversion occurs is well included within a transmission band of the one-dimensional plasma photonic crystal. We calculate the mode conversion coefficient, which measures the fraction of the electromagnetic wave energy absorbed into the plasma, and the spatial distribution of the magnetic field intensity for various values of the wave frequency and the incident angle using the invariant imbedding theory of mode conversion. We find that the absorption is greatly enhanced over a wide range of frequency and incident angle due to the interplay between the mode conversion and the photonic band structure. The enhancement occurs because for frequencies within a transmission band, the wave reflection is strongly suppressed and the waves penetrate more deeply into the inhomogeneous region, thereby increasing the possibility for them to reach many resonance points where the dielectric permittivity vanishes.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Effect of earth albedo variation on the performance of a spatial acquisition subsystem aboard a planetary spacecraft

The effect of Earth albedo variation on the pointing and tracking subsystem of a planetary optical communication package is analyzed. By studying the Cramer-Rao bound of the tracking error variance, it is shown that, when the Earth albedo is precisely known, the variance in spatial tracking error is inversely proportional to the total signal count. In contrast, a small uncertainty in the Earth albedo can result in an irreducible error in the tracking subsystem.

Chen, C.-C.↗

Characterization of shaped Bragg crystal assemblies for narrowband x-ray imaging

X-ray imaging using shaped crystals in Bragg reflection is a powerful technique used in high-energy-density physics experiments. The characterization of these crystal assemblies with conventional x-ray sources is very difficult because of the required angular resolution of the order of ~10 μrad and the narrow bandwidth of the crystal. The 10-J, 1-ps Multi-Terawatt (MTW) laser at the Laboratory for Laser Energetics was used to characterize a set of Bragg crystal assemblies. The small spot size (of the order of 5 μm) and the high power (>10 18 W/cm 2 ) of this laser make it possible to measure the spatial resolution at the intended photon energy. A set of six crystals from two different vendors was checked on MTW, showing an unexpectedly large variation in spatial resolution of up to a factor of 4.

47 OTHER INSTRUMENTATION↗

Fiber Optic Thermal Health Monitoring of Aerospace Structures and Materials

A new technique is presented for thermographic detection of flaws in materials and structures by performing temperature measurements with fiber Bragg gratings. Individual optical fibers with multiple Bragg gratings employed as surface temperature sensors were bonded to the surfaces of structures with subsurface defects or thickness variations. Both during and following the application of a thermal heat flux to the surface, the individual Bragg grating sensors measured the temporal and spatial temperature variations. The investigated structures included a 10-ply composite specimen with subsurface delaminations of various sizes and depths. The data obtained from grating sensors were further analyzed with thermal modeling to reveal particular characteristics of the interested areas. These results were found to be consistent with those from conventional thermography techniques. Limitations of the technique were investigated using both experimental and numerical simulation techniques. Methods for performing in-situ structural health monitoring are discussed.

Wu, Meng-Chou↗

Nitrogen Fertilization Restructured Spatial Patterns of Soil Organic Carbon and Total Nitrogen in Switchgrass and Gamagrass Croplands in Tennessee USA

Nitrogen (N) fertilizers can potentially alter spatial distribution of soil organic carbon (SOC) and total nitrogen (TN) concentrations in croplands such as switchgrass (SG: Panicum virgatum L.) and gamagrass (GG: Tripsacum dactyloides L.), but it remains unclear whether these effects are the same between crops and under different rates of fertilization. 13 C and 15 N are two important proxy measures of soil biogeochemistry, but they were rarely examined as to their spatial distributions in soil. Based on a three-year long fertilization experiment in Middle Tennessee, USA, the top mineral horizon soils (0–15 cm) were collected using a spatially explicit design within two 15-m 2 plots under three fertilization treatments in SG and GG croplands. A total of 288 samples were collected based on 12 plots and 24 samples in each plot. The fertilization treatments were no N input (NN), low N input (LN: 84 kg N ha -1 in urea) and high N input (HN: 168 kg N ha -1 in urea). The SOC, TN, SOC/TN (C: N), δ 13 C and δ 15 N were quantified and their within-plot variations and spatial distributions were achieved via descriptive and geostatistical methods. Results showed that SG generally displayed 10~120% higher plot-level variations in all variables than GG, and the plot-level variations were 20~77% higher in NN plots than LN and HN plots in SG but they were comparable in unfertilized and fertilized plots in GG. Relative to NN, LN and HN showed more significant surface trends and spatial structures in SOC and TN in both croplands, and the fertilization effect appeared more pronounced in SG. Spatial patterns in C: N, δ 13 C and δ 15 N were comparable among different fertilization treatments in both croplands. The descending within-plot variations were also identified among variables (SOC > TN > δ 15 N > C: N > δ 13 C). This study demonstrated that N fertilizations generally reduced the plot-level variance and simultaneously re-established spatial structures of SOC and TN in bioenergy croplands, which little varied with fertilization rate but was more responsive in switchgrass cropland.

59 BASIC BIOLOGICAL SCIENCES↗

Nonequilibrium spectral moment sum rules of the Holstein–Hubbard model

Abstract We derive a general procedure for evaluating the n th derivative of a time-dependent operator in the Heisenberg representation and employ this approach to calculate the zeroth to third spectral moment sum rules of the retarded electronic Green’s function and self-energy for a system described by the Holstein–Hubbard model allowing for arbitrary spatial and time variation of all parameters (including spatially homogeneous electric fields and parameter quenches). For a translationally invariant (but time-dependent) Hamiltonian, we also provide sum rules in momentum space. The sum rules can be applied to various different phenomena like time-resolved angle-resolved photoemission spectroscopy and benchmarking the accuracy of numerical many-body calculations. This work also corrects some errors found in earlier work on simpler models.

Physics↗

Contributions of vegetation heterogeneity within tower footprint to CO 2 flux estimations through graph neural network modeling

Net ecosystem exchange of CO 2 (Fc) measured directly by eddy covariance towers is based on various assumptions, including large, flat and homogenous land cover type. In reality, often a tower site is not large enough for flux measurements, and landscapes consist of patches of different land cover types within the flux footprint. In addition, some portions of fluxes are contributed by different cover types when a footprint exceeds the size of the target ecosystem. The contributions of non-dominant patches to Fc are often ignored. Here, in this study, we propose a novel integrated modeling framework that combines random forest (RF) and XGBoost with a residual correction module based on a deep graph convolutional network (DeeperGCN) to simulate Fc for seven flux measurement sites in southwest Michigan. High-resolution remote sensing vegetation indices, soil properties, meteorological variables, and footprint-weighted spatial features were used as model inputs at three spatial resolutions (10 m, 20 m, 30 m), and their importance in predicting Fc with DeeperGCN was assessed. We found that residual correction using DeeperGCN significantly improved prediction accuracy, with the R 2 increasing from 0.9098 to 0.9479 for RF and from 0.9235 to 0.9433 for XGBoost. At site level, the maximum improvement in R 2 reached 0.1617. Paired t-tests confirmed that these improvements were statistically significant (p < 0.05). Among all predictors, leaf area index and incoming shortwave radiation emerged as the dominant drivers of spatial residual variation, followed by precipitation, relative humidity, and selected vegetation indices. The 20 m resolution yielded the best balance between model performance and computational efficiency. In conclusion, our modeling framework effectively captures both spatial heterogeneity and nonlinear interactions, offering a robust solution for spatially explicit flux modeling in structurally diverse ecosystems beyond the study sites.

footprint model↗

Noise power spectrum of the fixed pattern noise in digital radiography detectors

Purpose: The fixed pattern noise in radiography image detectors is caused by various sources. Multiple readout circuits with gate drivers and charge amplifiers are used to efficiently acquire the pixel voltage signals. However, the multiple circuits are not identical and thus yield nonuniform system gains. Nonuniform sensitivities are also produced from local variations in the charge collection elements. Furthermore, in phosphor-based detectors, the optical scattering at the top surface of the columnar CsI growth, the grain boundaries, and the disorder structure causes spatial sensitivity variations. These nonuniform gains or sensitivities cause fixed pattern noise and degrade the detector performance, even though the noise problem can be partially alleviated by using gain correction techniques. Hence, in order to develop good detectors, comparative analysis of the energy spectrum of the fixed pattern noise is important. Methods: In order to observe the energy spectrum of the fixed pattern noise, a normalized noise power spectrum (NNPS) of the fixed pattern noise is considered in this paper. Since the fixed pattern noise is mainly caused by the nonuniform gains, we call the spectrum the gain NNPS. We first asymptotically observe the gain NNPS and then formulate two relationships to calculate the gain NNPS based on a nonuniform-gain model. Since the gain NNPS values are quite low compared to the usual NNPS, measuring such a low NNPS value is difficult. By using the average of the uniform exposure images, a robust measuring method for the gain NNPS is proposed in this paper. Results: By using the proposed measuring method, the gain NNPS curves of several prototypes of general radiography and mammography detectors were measured to analyze their fixed pattern noise properties. We notice that a direct detector, which is based on the a-Se photoconductor, showed lower gain NNPS than the indirect-detector case, which is based on the CsI scintillator. By comparing the gain NNPS curves of the indirect detectors, we could analyze the scintillator properties depending on the techniques for the scintillator surface processing. Conclusions: A robust measuring method for the NNPS of the fixed pattern noise of a radiography detector is proposed in this paper. The method can measure a stable gain NNPS curve, even though the fixed pattern noise level is quite low. From the measured gain NNPS curves, we can compare and analyze the detector properties in terms of producing the fixed pattern noise.

60 APPLIED LIFE SCIENCES↗

Image Distinguishability Analysis Testing Through Principal Components and Its Application to Hot Spot Scale Invariance

Hot spots are spatial regions of intense energy localization that govern initiation of secondary high explosives. Studies that characterize or compare simulated hot spots are frequently either qualitatively descriptive or resort to quantitative distribution functions that neglect stochastic variations and spatial correlations—effects that are also neglected in common comparison tests like the Kolmogorov–Smirnov test. To this end, we develop an image distinguishability analysis (IDA) test based on principal component (PC) analysis that makes pixel-by-pixel comparisons between small, for example, O(<10), image data sets. The IDA test makes comparisons through a generalized distance metric in the PC space and a test statistic that is derived to calculate mathematical equation-values. Here, we derive a statistical distribution and criticality criterion to determine whether images are distinguishable from established baselines. We apply the IDA test on images generated from molecular dynamics simulations of hot spots from pore collapse in TATB to assess scale invariance in the complex patterns of hot spots that form in a representative high explosive crystal. The IDA test shows that TATB hot spot spatial temperature fields and their derived temperature histograms exhibit scale-invariant features over specific intervals of shock orientation, strength, and initial pore diameter. However, the IDA test also shows that qualitatively different conclusions regarding invariance can be reached depending on whether the hot spot is treated as a spatially correlated field as opposed to a distribution function that lacks spatial information.

organic↗

Observations of Ocean Primary Productivity Using MODIS

Measuring the magnitude and variability of oceanic net primary productivity (NPP) represents a key advancement toward our understanding of the dynamics of marine ecosystems and the role of the ocean in the global carbon cycle. MODIS observations make two new contributions in addition to continuing the bio-optical time series begun with Orbview-2's SeaWiFS sensor. First, MODIS provides weekly estimates of global ocean net primary productivity on weekly and annual time periods, and annual empirical estimates of carbon export production. Second, MODIS provides additional insight into the spatial and temporal variations in photosynthetic efficiency through the direct measurements of solar-stimulated chlorophyll fluorescence. The two different weekly productivity indexes (first developed by Behrenfeld & Falkowski and by Yoder, Ryan and Howard) are used to derive daily productivity as a function of chlorophyll biomass, incident daily surface irradiance, temperature, euphotic depth, and mixed layer depth. Comparisons between these two estimates using both SeaWiFS and MODIS data show significant model differences in spatial distribution after allowance for the different integration depths. Both estimates are strongly dependence on the accuracy of the chlorophyll determination. In addition, an empirical approach is taken on annual scales to estimate global NPP and export production. Estimates of solar stimulated fluorescence efficiency from chlorophyll have been shown to be inversely related to photosynthetic efficiency by Abbott and co-workers. MODIS provides the first global estimates of oceanic chlorophyll fluorescence, providing an important proof of concept. MODIS observations are revealing spatial patterns of fluorescence efficiency which show expected variations with phytoplankton photo-physiological parameters as measured during in-situ surveys. This has opened the way for research into utilizing this information to improve our understanding of oceanic NPP variability. Deriving the ocean bio-optical properties places severe demands on instrument performance (especially band to band precision) and atmospheric correction. Improvements in MODIS instrument characterization and calibration over the first 16 mission months have greatly improved the accuracy of the chlorophyll input fields and FLH, and therefore the estimates of NPP and fluorescence efficiency. Annual estimates now show the oceanic NPP accounts for 40-50% of the global total NPP, with significant interannual variations related to large scale ocean processes. Spatial variations in ocean NPP, and exported production, have significant effects on exchange of CO2 between the ocean and atmosphere. Further work is underway to improve both the primary productivity model functions, and to refine our understanding of the relationships between fluorescence efficiency and NPP estimates. We expect that the MODIS instruments will prove extremely useful in assessing the time dependencies of oceanic carbon uptake and effects of iron enrichment, within the global carbon cycle.

Esaias, Wayne E.↗

Evaluating State Space Discovery by Persistent Cohomology in the Spatial Representation System

Persistent cohomology is a powerful technique for discovering topological structure in data. Strategies for its use in neuroscience are still undergoing development. We comprehensively and rigorously assess its performance in simulated neural recordings of the brain's spatial representation system. Grid, head direction, and conjunctive cell populations each span low-dimensional topological structures embedded in high-dimensional neural activity space. We evaluate the ability for persistent cohomology to discover these structures for different dataset dimensions, variations in spatial tuning, and forms of noise. We quantify its ability to decode simulated animal trajectories contained within these topological structures. We also identify regimes under which mixtures of populations form product topologies that can be detected. Our results reveal how dataset parameters affect the success of topological discovery and suggest principles for applying persistent cohomology, as well as persistent homology, to experimental neural recordings.

59 BASIC BIOLOGICAL SCIENCES↗

Ice Accretion Roughness Variations on a Hybrid CRM65-Midspan Wing Model

Ice accretion roughness measurements were performed in the Icing Research Tunnel (IRT) at NASA Glenn Research Center for the Hybrid CRM65-Midspan model in a range of icing conditions. The Hybrid CRM65-Midspan model was chosen for this investigation because 1) the model exhibits high sweep relative to models previously explored in the roughness investigations, 2) the model has leading edge characteristics similar to wing shapes currently used in mid-size commercial airliners, and 3) the sweep and thickness ratios relate better to hybrid lifting body designs for N+2 and N+3 vehicles than other models available. The investigation consisted of multiple sets of tests which focused on 1) 0-angle of attack cases replicating the conditions employed by Anderson et al. (1998) using both Appendix C and SLD cloud conditions, 2) cases based on the “Max Scallop” case by Broeren et al. (2016) and a “High Temperature” case with cloud properties similar to the “Max Scallop” case. Additional tests were performed 1) based on the “Max Scallop” case with variations in freestream static temperature and 2) using test section speeds near 10,000-hold flight conditions. The point clouds were characterized using the approach of McClain and Kreeger (2013) for the ice roughness variations and using the approach of McClain (2016) for the mean ice thickness variations. The resulting roughness and mean thickness variations generally follow the temporal scaling previously identified using on airfoil models without sweep, but the collapse of the time progression profiles is not as tight as found for past measurements on models without sweep. LEWICE and modified panel-method predictions were used explore spatial roughness variations and to compare to the roughness correlations developed by McClain et al. (2021) for the “Max Scallop” cases.

Icing↗

SUPERNOVA DRIVING. III. SYNTHETIC MOLECULAR CLOUD OBSERVATIONS

We present a comparison of molecular clouds (MCs) from a simulation of supernova (SN) driven interstellar medium (ISM) turbulence with real MCs from the Outer Galaxy Survey. The radiative transfer calculations to compute synthetic CO spectra are carried out assuming that the CO relative abundance depends only on gas density, according to four different models. Synthetic MCs are selected above a threshold brightness temperature value, T {sub B,min} = 1.4 K, of the J = 1 − 0 {sup 12}CO line, generating 16 synthetic catalogs (four different spatial resolutions and four CO abundance models), each containing up to several thousands MCs. The comparison with the observations focuses on the mass and size distributions and on the velocity–size and mass–size Larson relations. The mass and size distributions are found to be consistent with the observations, with no significant variations with spatial resolution or chemical model, except in the case of the unrealistic model with constant CO abundance. The velocity–size relation is slightly too steep for some of the models, while the mass–size relation is a bit too shallow for all models only at a spatial resolution dx ≈ 1 pc. The normalizations of the Larson relations show a clear dependence on spatial resolution, for both the synthetic and the real MCs. The comparison of the velocity–size normalization suggests that the SN rate in the Perseus arm is approximately 70% or less of the rate adopted in the simulation. Overall, the realistic properties of the synthetic clouds confirm that SN-driven turbulence can explain the origin and dynamics of MCs.

79 ASTRONOMY AND ASTROPHYSICS↗

Variation of the urban NO2 concentration during a ground inversion situation

In February 1985 the NO2 concentration over Goeteborg, a major Swedish city, was monitored during two inversion situations. The differential absorption technique was employed and the results show the build-up of the concentration. In this experiment the laser beam was scanned horizontally over Goeteborg. The results were presented as maps over the NO2 concentration distribution. For security reasons the beam was not parallel to the ground, which gives a height gradient in some measurements. During the measurement period the NO2 concentration variation build-up from the morning to the afternoon was monitored. Great concentration variations were seen. Later the mixing below the inversion layer, resulting in a more uniform, high concentration was seen. The breakdown of the inversion when stronger winds start was also seen. Comparisons with a traditional point-measuring chemiluminiscence instrument and an optical method DOAS (Differential Optical Absorption Spectroscopy), were made. The results are discussed. Strong spatial concentration variations are shown by the lidar measurements. For a point-measuring system, the instrument must be very carefully placed since its location will strongly influence the values it gives.

Sunesson, A.↗

Reduction and analysis of seasons 15 and 16 (1991 - 1992) Pioneer Venus radio occultation data and correlative studies with observations of the near-infrared emission of Venus

Radio occultation experiments, and radio astronomical observations have suggested that significant variations (both spatial and temporal) in the abundances of sulfur-bearing gases are occurring below the Venus cloud layers. In addition, recent Near Infra-Red images of the nightside of Venus revealed large-scale features which sustain their shape over multiple rotations (the rotation periods of the features are 6.0 +/- 0.5 days). Presumably, the contrast variations in the NIR images are caused by variations in the abundance of large particles in the cloud deck. If these particles are composed of liquid sulfuric acid, one would expect a strong anticorrelation between regions with a high abundance of sulfuric acid vapor, and regions where there are large particles. One technique for monitoring the abundance and distribution of sulfuric acid vapor (H2SO4) at and below the main Venus cloud layer (altitudes below 50 km) is to measure the 13-cm wavelength opacity using Pioneer Venus Orbiter Radio Occultation Studies (PV-ORO). We are working to characterize variations in the abundance and distribution of subcloud H2SO4(g) in the Venus atmosphere by using a number of 13-cm radio occultation measurements conducted with the Pioneer Venus Orbiter near the inferior conjunction of 1991. When retrieved, the vertical profiles of the abundance of H2SO4(g) will be compared and correlated with NIR images of the night side of Venus made during the same period of time. Hopefully, the combination of these two different types of data will make it possible to constrain or identify the composition of the large particles causing the features observed in the NIR images. Considered on their own, however, the parameters retrieved from the radio occultation experiments are valuable science products.

Jenkins, Jon M.↗

Improving E3SM Land Model Photosynthesis Parameterization via Satellite SIF, Machine Learning, and Surrogate Modeling

The parameterization of key photosynthesis parameters is one of the key uncertain sources in modeling ecosystem gross primary productivity (GPP). Solar-induced chlorophyll fluorescence (SIF) offers a good proxy for GPP since it marks the actual process of photosynthesis; while machine learning (ML) provides a robust approach to model the GPP-SIF relationship. Here, we trained the boosted regressing tree (BRT) and the Random Forest ML models with Greenhouse Gases Observing Satellite SIF data and in situ GPP observations from 49 eddy covariance towers. These trained ML GPP-SIF models were fed into the Energy Exascale Earth System Model (E3SM) Land Model (ELM) to generate ELM-simulated global SIF estimates, which were then benchmarked against satellite SIF observations with a surrogate modeling approach. Our results indicated good modeling performance of the ML-based GPP-SIF relationship. The ELM model when fed with the ML GPP-SIF models also can well predict the spatial-temporal variations in SIF. We also found high model accuracy for the surrogate modeling. Model parameter sensitivity analysis suggested that the fraction of leaf nitrogen in RuBisCO (flnr) is the most sensitive parameter to the SIF; other sensitive parameters include the Ball-Berry stomatal conductance slope (mbbopt) and the vcmax entropy (vcmaxse). The posterior uncertainty in simulated GPP was greatly reduced after benchmarking, and the model produced improved spatial patterns of mean GPP relative to FLUXCOM GPP. Our integrated approach provides a new avenue for improving land models and using remote-sensing SIF, which can be further improved in the future with more ground- and satellite-based observations.

54 ENVIRONMENTAL SCIENCES↗