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At least 1,243 records · Page 69

Phenotypically anchored transcriptomics across diverse agrichemicals reveals conserved pathways and unique gene expression signatures in zebrafish

Agrichemicals such as herbicides, fungicides, insecticides, and biocides are widely used in agriculture, yet some are associated with adverse effects in humans and the environment. While many of these chemicals have been extensively studied in vitro and are included in the EPA’s ToxCast program, comprehensive in vivo comparisons using RNA sequencing across structurally diverse agrichemicals, in a single screening platform, are lacking. In this study, we examined structurally diverse agrichemicals found in the U.S. Environmental Protection Agency’s (EPA) Toxcast Phase I and II library by statically exposing early life stage zebrafish at 6 h post fertilization (hpf) until 120 hpf at concentrations ranging from 0.25 to 100 µM. Morphological outcomes were assessed at 120 hpf across 10 endpoints, including yolk sac edema, craniofacial malformations, and axis abnormalities. Chemicals that produced robust concentration-response relationships were selected for transcriptomic profiling. For transcriptomic analysis, zebrafish were statically exposed to each chemical and sampled at 48 hpf, prior to the onset of morphological effects observed at 120 hpf. Differential expression analysis identified between 0 and 4,538 differentially expressed genes (DEGs) per chemical, with no clear correlation to morphological severity. Both DEG and co-expression network analyses revealed chemical-specific expression patterns that converged on shared biological pathways, including neurodevelopment and cytoskeletal organization. Key regulatory genes such as mylpfa and krt4 were identified within co-expression modules, suggesting their potential role in conserved toxicity mechanisms. Semantic similarity analysis of enriched gene ontology (GO) terms, when compared to existing datasets, highlighted gaps in the annotation of neurodevelopmental processes, indicating that some in vivo effects may not be fully captured by current curated resources. The results provide new insights into the modes of action of diverse agrichemicals and establish a framework for understanding how agrichemical structure relates to biological function in a vertebrate model.

agrichemical↗

C iii] Emission in Star-forming Galaxies at z ∼ 1

The C iii]λλ1907, 1909 rest-frame UV emission doublet has recently been detected in galaxies during the epoch of reionization (z > 6), with a high equivalent width (EW; 10 Å, rest frame). Currently, it is possible to obtain much more detailed information for star-forming galaxies at significantly lower redshift. Accordingly, studies of their far-UV spectra are useful for understanding the factors modulating the strength of C iii] emission. We present the first statistical sample of C iii] emission measurements in star-forming galaxies at z ∼ 1. Our sample is drawn from the DEEP2 survey and spans the redshifts 0.64 ⩽ z ⩽ 1.35 (〈z〉=1.08). We find that the median EW of individual C iii] detections in our sample (1.30 Å) is much smaller than the typical value observed thus far at z > 6. Furthermore, out of 184 galaxies with coverage of C iii], only 40 have significant detections. Galaxies with individual C iii] detections have bluer colors and lower luminosities on average than those without, implying that strong C iii] emitters are in general young and low-mass galaxies without significant dust extinction. Using stacked spectra, we further investigate how C iii] strength correlates with multiple galaxy properties (M {sub B}, U − B, M {sub *}, star formation rate, specific star formation rate) and rest-frame near-UV (Fe ii* and Mg ii) and optical ([O iii] and Hβ) emission line strengths. These results provide a detailed picture of the physical environment in star-forming galaxies at z ∼ 1, and motivate future observations of strong C iii] emitters at similar redshifts.

79 ASTRONOMY AND ASTROPHYSICS↗

Desorption lifetimes and activation energies influencing gas–surface interactions and multiphase chemical kinetics

Abstract. Adsorption and desorption of gases on liquid or solid substrates are involved in multiphase processes and heterogeneous chemical reactions. The desorption energy (Edes0), which depends on the intermolecular forces between adsorbate and substrate, determines the residence time of chemical species at interfaces. We show how Edes0 and temperature influence the net uptake or release of gas species, the rates of surface–bulk exchange and surface or bulk reactions, and the equilibration timescales of gas–particle partitioning. Using literature data, we derive a parameterization to estimate Edes0 for a wide range of chemical species based on the molecular mass, polarizability, and oxygen-to-carbon ratio of the desorbing species independent of substrate-specific properties, which is possible because of the dominant role of the desorbing species' properties. Correlations between Edes0 and the enthalpies of vaporization and solvation are rooted in molecular interactions. The relation between Edes0 and desorption kinetics reflects the key role of interfacial exchange in multiphase processes. For small molecules and semi-volatile organics (VOC, IVOC, SVOC), Edes0 values around 10–100 kJ mol−1 correspond to desorption lifetimes around nanoseconds to days at room temperature. Even higher values up to years are obtained at low temperatures and for low volatile organic compounds (LVOC, ELVOC/ULVOC) relevant for secondary organic aerosols (SOA). Implications are discussed for SOA formation, gas–particle partitioning, organic phase changes, and indoor surface chemistry. We expect these insights to advance the mechanistic and kinetic understanding of multiphase processes in atmospheric and environmental physical chemistry, aerosol science, materials science, and chemical engineering.

54 ENVIRONMENTAL SCIENCES↗

Evaluation of global teleconnections in CMIP6 climate projections using complex networks

In climatological research, the evaluation of climate models is one of the central research subjects. As an expression of large-scale dynamical processes, global teleconnections play a major role in interannual to decadal climate variability. Their realistic representation is an indispensable requirement for the simulation of climate change, both natural and anthropogenic. Therefore, the evaluation of global teleconnections is of utmost importance when assessing the physical plausibility of climate projections. We present an application of the graph-theoretical analysis tool δ-MAPS, which constructs complex networks on the basis of spatio-temporal gridded data sets, here sea surface temperature and geopotential height at 500 hPa. Complex networks complement more traditional methods in the analysis of climate variability, like the classification of circulation regimes or empirical orthogonal functions, assuming a new non-linear perspective. While doing so, a number of technical tools and metrics, borrowed from different fields of data science, are implemented into the δ-MAPS framework in order to overcome specific challenges posed by our target problem. Those are trend empirical orthogonal functions (EOFs), distance correlation and distance multicorrelation, and the structural similarity index. δ-MAPS is a two-stage algorithm. In the first place, it assembles grid cells with highly coherent temporal evolution into so-called domains. In a second step, the teleconnections between the domains are inferred by means of the non-linear distance correlation. We construct 2 unipartite and 1 bipartite network for 22 historical CMIP6 climate projections and 2 century-long coupled reanalyses (CERA-20C and 20CRv3). Potential non-stationarity is taken into account by the use of moving time windows. The networks derived from projection data are compared to those from reanalyses. Our results indicate that no single climate projection outperforms all others in every aspect of the evaluation. But there are indeed models which tend to perform better/worse in many aspects. Differences in model performance are generally low within the geopotential height unipartite networks but higher in sea surface temperature and most pronounced in the bipartite network representing the interaction between ocean and atmosphere.

58 GEOSCIENCES↗

Handling qualities criteria for the space shuttle orbiter during the terminal phase of flight

It was found that large portions of the military handling qualities specification are directly applicable. However a number of additional and substitute criteria are recommended for areas not covered or inadequately covered in the military specification. Supporting pilot/vehicle analyses and simulation experiments were conducted and are described. Results are also presented of analytical and simulator evaluations of three specific interim Orbiter designs which provided a test of the proposed handling qualities criteria. The correlations between the analytical and experimental evaluations were generally excellent.

Stapleford, R. L.↗

Structural integrity in aircraft.

The paper reviews briefly the current design philosophies for achieving long, efficient, and reliable service in aircraft structures. The strengths and weaknesses of these design philosophies and their demonstrated records of success are discussed. The state of the art has not been developed to the point where designing can be done without major test inspection and maintenance programs. A broad program of research is proposed through which a viable computerized design scheme will be provided during the next decade. The program will organize and correlate existing knowledge on fatigue and fracture behavior, identify gaps in this knowledge, and guide specific research to upgrade design capabilities.

Hardrath, H. F.↗

A study of cosmic rays on the artificial moon satellites Luna-11 and Luna-12

In the period from the end of August 1966 to January 1967 the primary cosmic radiation fluxes beyond the terrestrial magnetosphere were measured by means of the equipment mounted on the satellites Luna-11 and Luna-12. The altitude dependence of cosmic rays near the lunar surface as well as the intensity of protons and electrons of solar origin in the moon's vicinity were determined. The correlation of proton intensity with the parameters characterizing the solar and geomagnetic activities and the specific features of the angular distribution of the proton flux as revealed during measurements are given. Data on electron fluxes studied on September 1 and 8, 1966, when short term increases in the electron intensity were observed are included.

Grigorov, N. L.↗

Significance of medium-energy gamma-ray astronomy in the study of cosmic rays

The paper examines the medium-energy (about 10-30 MeV) galactic gamma-ray radiation from primary and secondary electrons and calculates the expected gamma-ray distribution for the specific model of Bignami et al. (1975) on the assumption that the cosmic rays are correlated with the matter on the scale of galactic arms. The energy spectrum typical of regions near the galactic center indicates a dramatic shift from a predominantly cosmic-ray nucleonic mechanism at higher energies to a cosmic-ray electron mechanism at the lower energies. This provides a most important and direct means of probing the cosmic-ray electrons as a function of galactic position by making gamma-ray observations in the few to 40 MeV energy range. Medium-energy gamma-ray astronomy is shown to be a valuable tool in galactic research.

Fichtel, C. E.↗

Annual progress report

The emission components of spiral galaxies between 12 microns and 90 cm are identified. Additionally, an attempt to understand the relationships between them was made. The specific goal was to gain some understanding on the nature of the radio-infrared correlation. The results are summarized.

Duric, Nebojsa↗

Ab Initio Characterization of Triatomic Bromine Molecules of Potential Interest in Stratospheric Chemistry

The equilibrium structures, harmonic vibrational frequencies, quadratic force fields, dipole moments, and IR intensities of several triatomic bromine compounds of known or potential importance in stratospheric ozone depletion chemistry have been determined using the CCSD(T) electron correlation method in conjunction with a basis set of triple zeta double polarized (TZ2P) quality. Specifically, the molecules included in the present study are HOBr, HBrO, FOBr, FBrO, BrNO, BrON, Br2O, BrBrO, BrCN, BrNC, ClOBr, ClBrO, and BrClO. Very accurate isomeric energy differences have also been determined at the CCSD(T) level with atomic natural orbital basis sets that include through g-type functions. In most cases, the isomer with a normal neutral Lewis dot structure is the lowest energy form, with the single exception that FBRO is predicted to be 11.1 kcal/mol (0 K) lower in energy than FOBr. In all cases, however, the hypervalent isomer is more stable relative to the isomer with a normal Lewis dot structure as compared to the chlorine analogs. Consistent with this observation, the energy of the last three molecules given above increases in the order ClOBr less than ClBrO less than BrClO. The CCSD(T)/TZ2P geometries and vibrational frequencies are in good agreement with the available experimental data. Heats of formation are determined for all species using a combination of theoretical isomeric, homodesmic, and isodesmic reaction energies. The accuracy of these quantities is ultimately dependent on the reliability of the experimental heat of formation of HOBr.

Lee. Timothy J.↗

Ab Initio Characterization of Triatomic Bromine Molecules of Potential Interest in Stratospheric Chemistry

The equilibrium structures, harmonic vibrational frequencies, quadratic force fields, dipole moments, and IR intensities of several triatomic bromine compounds of known or potential importance in stratospheric ozone depletion chemistry have been determined using the CCSD(T) electron correlation method in conjunction with a basis set of triple zeta double polarized (TZ2P) quality. Specifically, the molecules included in the present study are HOBr, HBrO, FOBr, FBrO, BrNO, BrON, Br2O, BrBrO, BrCN, BrNC, ClOBr, ClBrO, and BrClO. Very accurate isomeric energy differences have also been determined at the CCSD(T) level with atomic natural orbital basis sets that include through g-type functions. In most cases, the isomer with a normal neutral Lewis dot structure is the lowest energy form, with the single exception that FBrO is predicted to be 11.1 kcal/mol (0 K) lower in energy than FOBr. In all cases, however, the hypervalent isomer is more stable relative to the isomer with a normal Lewis dot structure as compared to the chlorine analogs. Consistent with this observation, the energy of the last three molecules given above increases in the order ClOBr less than ClBrO less than BrClO. The CCSD(T)/TZ2P geometries and vibrational frequencies are in good agreement with the available experimental data. Heats of formation are determined for all species using a combination of theoretical isomeric, homodesmic, and isodesmic reaction energies. The accuracy of these quantities is ultimately dependent on the reliability of the experimental heat of formation of HOBr.

Lee, Timothy J.↗

ACTS Ka-band Propagation Research in a Spatially Diversified Network with Two USAT Ground Stations

Congestion in the radio spectrum below 18 GHz is stimulating greater interest in the Ka (20/30 GHz) frequency band. Transmission at these shorter wavelengths is greatly influenced by rain resulting in signal attenuation and decreased link availability. The size and projected cost of Ultra Small Aperture Terminals (USATS) make site diversity methodology attractive for rain fade compensation. Separation distances between terminals must be small to be of interest commercially. This study measures diversity gain at a separation distance <5 km and investigates utilization of S-band weather radar reflectivity in predicting diversity gain. Two USAT ground stations, separated by 2.43 km for spatial diversity, received a continuous Ka-band tone sent from NASA Glenn Research Center via the Advanced Communications Technology Satellite (ACTS) steerable antenna beam. Received signal power and rainfall were measured, and Weather Surveillance Radar-1998 Doppler (WSR-88D) data were obtained as a measure of precipitation along the USAT-to-ACTS slant path. Signal attenuation was compared for the two sites, and diversity gain was calculated for fades measured on eleven days. Correlation of WSR-88D S-band reflectivity with measured Ka-band attenuation consisted of locating radar volume elements along each slant path, converting reflectivity to Ka-band attenuation with rain rate calculation as an intermediate step. Specific attenuation for each associated path segment was summed, resulting in total attenuation along the slant path. Derived Ka-band attenuation did not correlate closely with empirical data (r = 0.239), but a measured signal fade could be matched with an increase in radar reflectivity in all fade events. Applying a low pass filter to radar reflectivity prior to deriving Ka-band attenuation improved the correlation between measured and derived signal attenuation (r = 0.733). Results indicate that site diversity at small separation distances is a viable means of rain fade compensation, and that existing models underestimate diversity gain for a subtropical climate such as Florida. Also, filtered WSR-88D reflectivity can be used for optimizing diversity terminal placement by comparing derived Ka- band attenuation between the diversity sites.

Kalu, Alex↗

Cellular localization of the Ca2+ binding TCH3 protein of Arabidopsis

TCH3 is an Arabidopsis touch (TCH) gene isolated as a result of its strong and rapid upregulation in response to mechanical stimuli, such as touch and wind. TCH3 encodes an unusual calcium ion-binding protein that is closely related to calmodulin but has the potential to bind six calcium ions. Here it is shown that TCH3 shows a restricted pattern of accumulation during Arabidopsis vegetative development. These data provide insight into the endogenous signals that may regulate TCH3 expression and the sites of TCH3 action. TCH3 is abundant in the shoot apical meristem, vascular tissue, the root columella and pericycle cells that give rise to lateral roots. In addition, TCH3 accumulation in cells of developing shoots and roots closely correlates with the process of cellular expansion. Following wind stimulation, TCH3 becomes more abundant in specific regions including the branchpoints of leaf primordia and stipules, pith parenchyma, and the vascular tissue. The consequences of TCH3 upregulation by wind are therefore spatially restricted and TCH3 may function at these sites to modify cell or tissue characteristics following mechanical stimulation. Because TCH3 accumulates specifically in cells and tissues that are thought to be under the influence of auxin, auxin levels may regulate TCH3 expression during development. TCH3 is upregulated in response to low levels of exogenous indole-3-acetic acid (IAA), but not by inactive auxin-related compounds. These results suggest that TCH3 protein may play roles in mediating physiological responses to auxin and mechanical environmental stimuli.

NASA Discipline Plant Biology↗

Real Time On-line Space Research Laboratory Environment Monitoring with Off-line Trend and Prediction Analysis

One of the responsibilities of the NASA Glenn Principal Investigator Microgravity Services is to support NASA sponsored investigators in the area of reduced-gravity acceleration data analysis, interpretation and the monitoring of the reduced-gravity environment on-board various carriers. With the International Space Station currently operational, a significant amount of acceleration data is being down-linked and processed on ground for both the space station onboard environment characterization (and verification) and scientific experiments. Therefore, to help principal investigator teams monitor the acceleration level on-board the International Space Station to avoid undesirable impact on their experiment, when possible, the NASA Glenn Principal Investigator Microgravity Services developed an artificial intelligence monitoring system, which detects in near real time any change in the environment susceptible to affect onboard experiments. The main objective of the monitoring system is to help research teams identify the vibratory disturbances that are active at any instant of time onboard the International Space Station that might impact the environment in which their experiment is being conducted. The monitoring system allows any space research scientist, at any location and at any time, to see the current acceleration level on-board the Space Station via the World Wide Web. From the NASA Glenn s Exploration Systems Division web site, research scientists can see in near real time the active disturbances, such as pumps, fans, compressor, crew exercise, re-boost, extra-vehicular activity, etc., and decide whether or not to continue operating or stopping (or making note of such activity for later correlation with science results) their experiments based on the g-level associated with that specific event. A dynamic graphical display accessible via the World Wide Web shows the status of all the vibratory disturbance activities with their degree of confidence as well as their g-level contribution to the environment. The system can detect both known and unknown vibratory disturbance activities. It can also perform trend analysis and prediction by analyzing past data over many Increments of the space station for selected disturbance activities. This feature can be used to monitor the health of onboard mechanical systems to detect and prevent potential system failure as well as for use by research scientists during their science results analysis. Examples of both real time on-line vibratory disturbance detection and off-line trend analysis are presented in this paper. Several soft computing techniques such as Kohonen s Self-Organizing Feature Map, Learning Vector Quantization, Back-Propagation Neural Networks, and Fuzzy Logic were used to design the system.

Jules, Kenol↗

Impact of Radiation Quality on Microdosimetry Calculation

Microdosimetry consists of studying energy deposition events in irradiated targets of volume typically of the order of a cell. The probability density 𝑓(𝑧,𝐷) of energy deposition𝑧(specific energy) in a target, exposed to an irradiation dose 𝐷,can be used to correlate inhomogeneous energy deposition events at the micro-scale(track structure)with biological responses(e.g., cell injury)[1]. Microdosimetry studies allow a better understanding of basic mechanisms of the biological response, such as the origin of the increased biological effectiveness of high Linear Energy Transfer (LET) ions, partly responsible of radiation-exposure induced cancer risks of astronauts [2].

F. Poignant↗

A Method for Validating Causal Diagrams of Human Health Risk in Space Flight

The complexity of cause-and-effect relationships between spaceflight hazards and resulting health conditions clouds understanding of the totality of human system risk in space. In response, NASA has introduced Directed Acyclic Graphs (causal diagrams) into the human systems risk management process. These diagrams allow for a common understanding of the mechanisms that lead from unique hazards of spaceflight to the health outcomes important to agencies and astronauts. However, the paucity of available biomedical data from spaceflight creates a need for methods of validating causal models that can accommodate data from spaceflight model analogs. Here we outline one approach utilizing open-access rodent bone datasets from the Ames Life Sciences Data Archive. The properties of directed acyclic graphs themselves can provide an epistemological and statistical framework for validation of a priori causal representations of human system risk in space flight. The assumed causal connections on the graph creates sets of logical implications: variables that – if the causal diagram is correct – should be correlated, as well as sets that should be conditionally independent. By testing these implied correlations and conditional independencies both statistically and heuristically, we can provide evidence for or against specific causal pathways on the causal diagram. In addition to validation of expert-generated causal diagrams, machine learning techniques can learn the most likely structure of a causal diagram from a given dataset. Comparison with and reconciliation between machine-learned causal diagrams and expert-generated diagrams is another technique for challenging assumptions and improving our understanding of causal mechanisms. Accurately representing complex causation is essential to systemic understanding of human health risks in space travel. Having a robust system of validating causal diagrams helps us arrive at more accurate representations of causal systems. This process will be integral to developing the countermeasures necessary for extended exploration of the moon and Mars.

Robert Reynolds↗

Patterning corrosion-susceptible metallic alloys for digital image correlation in a scanning electron microscope: Patterning corrosion susceptible alloys for SEM-DIC

Here we investigate the self-assembly of gold nanoparticles on the surface of magnesium functionalized with 3-(aminopropyl)trimethoxysilane or 3-(mercaptopropyl)trimethoxysilane. These nanoparticles served as a speckle pattern for high magnification deformation tracking via digital image correlation combined with scanning electron microscopy. Controlling the pH of the gold nanoparticle suspension to a specific basicity passivated corrosion in magnesium and in three of its alloys to enable proper nanoparticle bonding and self-assembly. Magnesium was used as a model material as it is particularly difficult to modify for self-assembly because of its propensity to quickly form a thick oxide, hydroxide, and carbonate layer in the presence of oxygen, water, and carbon dioxide, respectively. Moreover, it corrodes in acidic and slightly basic solutions, further complicating the self-assembly process. Due to these difficulties, the successful self-assembly of nanoparticles on magnesium has not previously been reported, to the best of the authors' knowledge. This technique is potentially amendable to other corrosion-susceptible materials. Gold nanoparticles were self-assembled in a uniformly dispersed random distribution on pure cast magnesium, cast AM60 (Mg-6Al-0.5Mn), rolled WE43 (Mg-4Y-3Nd/Gd), and extruded ZE20 (Mg-2Zn-0.2Ce).

36 MATERIALS SCIENCE↗

Modeling the Influence of Correlated Molecular Disorder on the Dynamics of Excitons in Organic Molecular Semiconductors

In this paper, we investigate the role of correlated molecular disorder on the dynamics of excitons in oligothiophene-based organic semiconductors. We simulate exciton dynamics using the Frenkel exciton model and derive parameters for this model so that they reflect the specific characteristics of all-atom molecular systems. By systematically modifying the parameters of the Frenkel exciton model, we isolate the influence of spatial and temporal molecular correlations on the dynamics of excitons in these systems. For the oligothiophene systems considered here, we find that the molecular fluctuations exhibit long-lived memory effects, but these effects do not significantly influence the dynamic properties of excitons. We also find that excitons can be sensitive to the molecular-scale spatial correlations, and that this sensitivity grows with the amount of energetic disorder within the material. We conclude that control over spatial correlations can mitigate the negative influence of disorder on exciton transport.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗