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Results for “AMPLIFICATION”

Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 127 records · Page 7
All sourcesNASA NTRSDOE OSTI
DOE OSTI2022

Amplification-free nucleic acid detection with a fluorescence-based waveguide biosensor

Early detection of pathogens using nucleic acids in clinical samples often requires sensitivity at the single-copy level, which currently necessitates time-consuming and expensive nucleic acid amplification. Here, we describe 1) a redesigned flow cell in the shape of a trapezoid-subtracted geometric stadium, and 2) modified experimental procedures that allow for the measurement of sub-attomolar analytes in microliter quantities on a fluorescence-based waveguide biosensor. We verified our instrumental sensitivity with a 200-μL sample of a fluorescent streptavidin conjugate at 100 zM (100 zeptomolar, or 100·10 −21 mol L −1 ) and theoretically explored the applicability of this modified sensing platform in a sandwich immunoassay format using a Langmuir adsorption model. We present assays that demonstrate specific detection of synthetic influenza A DNA (in buffer) and RNA (in saliva) oligonucleotides at the single-copy level (200 μL at 10 zM) using a fluorescent molecular beacon. Lastly, we demonstrate detection of isolated genomic influenza A RNA at a clinically relevant concentration. This work constitutes a sensitivity improvement of over twelve orders of magnitude compared to our previous nucleic acid detection work, illustrating the significant enhancements that can be gained with optimized experimental design.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2023

Arctic Amplification in the Community Earth System Models (CESM1 and CESM2)

We compare the Arctic amplification (AA) produced by the two Community Earth System Models CESM1 and CESM2, members of the CEMIP5 (Coupled Models Intercomparison Project phase 5) and CEMIP6 collections, respectively. We find that the CESM1 model reproduces the recent high values of the AA deduced from the observed temperature much better than the CESM2. The correlation coefficient within the 1970–2012 time period between CESM1-simulated AA and the observed one is 0.47, while the CESM2 simulation leads to an anticorrelation of r = –0.53. Even the more successful model (CESM1) is not able to reproduce recent high AA values of 4–5. The main cause of this failure is the model’s overestimate of the rate of increase in the mean global temperature in years post 1990. When the CESM1 model’s simulated trend of the mean global temperature is replaced in the expression for the AA by the observed temperature trend, the correlation coefficient increases from 0.47 to 0.75. The CESM1 model is among the best north American models in AA simulation while the CESM2 model is among the least successful.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2024

Development of a Colorimetric Loop-Mediated Isothermal Amplification Assay for the Detection of Trypanosoma cruzi in Low-Resource Settings

Chagas disease is an inflammatory parasitic infection caused by Trypanosoma cruzi (T. cruzi). Early diagnosis is crucial in guiding treatment and slowing disease progression; however, current diagnostic methods have insufficient detection limits and often require skilled technicians. Molecular tests, especially isothermal nucleic acid assays, are advantageous due to their excellent sensitivity, specificity, speed, and simplicity. Here, we optimized a colorimetric loop-mediated isothermal amplification (LAMP) assay for T. cruzi. We can detect as few as 2 genomic copies/reaction using three different T. cruzi strains. We examined selectivity using other parasitic protozoans and successfully detected T. cruzi DNA extracted from parasites in human whole blood down to 1.2 parasite equivalents/reaction. We also performed a blinded study using canine blood samples and established a 100% sensitivity, specificity, and accuracy for the colorimetric LAMP assay. Finally, we used a heated 3D printer bed and an insulated thermos cup to demonstrate that the LAMP incubation step could be performed with accessible, low-cost materials. Altogether, we have developed a high-performing assay for T. cruzi with a simple colorimetric output that would be ideal for rapid, low-cost screening at the point of use.

60 APPLIED LIFE SCIENCES↗
DOE OSTI2023

Propidium Monoazide (PMAxx)-Recombinase Polymerase Amplification Exo (RPA Exo) Assay for Rapid Detection of Burkholderia cepacia Complex in Chlorhexidine Gluconate (CHX) and Benzalkonium Chloride (BZK) Solutions

Both sterile and non-sterile pharmaceutical products, which include antiseptics, have been recalled due to Burkholderia cepacia complex (BCC) contamination. Therefore, minimizing the frequency of outbreaks may be conducive to the development of a quick and sensitive approach that can distinguish between live and dead loads of BCC. We have assessed an exo probe-based recombinase polymerase amplification (RPA) with 10 µM propidium monoazide (PMAxx) for selective detection of live/dead BCC cells in various concentrations of antiseptics (i.e., chlorhexidine gluconate (CHX) and benzalkonium chloride (BZK) solutions) after 24 h. The optimized assay conducted using a set of primer–probes targeting gbpT was performed at 40 °C for 20 min and shows a detection limit of 10 pg/µL of genomic DNA from B. cenocepacia J2315, equivalent to 10 4 colony-forming units (CFU/mL). The specificity of a newly designed primer and probe was 80% (20 negatives out of 25). The readings for total cells (i.e., without PMAxx) from 200 µg/mL CHX using PMAxx-RPA exo assay was 310 relative fluorescence units (RFU), compared to 129 RFU with PMAxx (i.e., live cells). Furthermore, in 50–500 µg/mL BZK-treated cells, a difference in the detection rate was observed between the PMAxx-RPA exo assay in live cells (130.4–459.3 RFU) and total cells (207.82–684.5 RFU). This study shows that the PMAxx-RPA exo assay appears to be a valid tool for the simple, rapid and presumptive detection of live BCC cells in antiseptics, thereby ensuring the quality and safety of pharmaceutical products.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2019

Linear Regression Based Multi-fidelity Surrogate for Disturbance Amplification in Multi-phase Explosion

When simulations are very expensive and many are required, as for optimization or uncertainty quantification, a way to reduce cost is using surrogates. With multiple simulations to predict the quantity of interest, some being very expensive and accurate (high-fidelity simulations) and others cheaper but less accurate (low-fidelity simulations), it may be worthwhile to use multifidelity surrogates (MFSs). Moreover, if we can afford just a few high-fidelity simulations or experiments, MFS becomes necessary. Co-Kriging, which is probably the most popular MFS, replaces both low-fidelity and high-fidelity simulations by a single MFS. A recently proposed linear regression–based MFS (LR-MFS) offers the option to correct the LF simulations instead of correcting the LF surrogate in the MFS. When the low-fidelity simulation is cheap enough for use in an application, such as optimization, this may be an attractive option. Here, we explore the performance of LR-MFS using exact and surrogate-replaced low-fidelity simulations. The concern studied is a cylindrical dispersal of 100-μ m-diameter solid particles after detonation and the quantity of interest is a measure of the amplification of the departure from axisymmetry. We find very substantial accuracy improvements for this problem using the LR-MFS with exact low-fidelity simulations. Inspired by these results, we also compare the performance of co-Kriging to the use of Kriging to correct exact low-fidelity simulations and find a similar accuracy improvement when simulations are directly used. For this problem, further improvements in accuracy are achievable by taking advantage of inherent parametric symmetries. These findings may alert users of MFSs to the possible advantages of using exact low-fidelity simulations when this is affordable.

42 ENGINEERING↗
DOE OSTI2019

Amplification of Waveguide Teleconnections in the Boreal Summer

While the influence of climate change on mid-latitude atmospheric circulation remains uncertain, hypotheses based on linear waveguide dynamics have been proposed suggesting amplification of circumglobal quasi-stationary Rossby wave events, which may have led to persistent and high-impact extremes in recent boreal summers. Furthermore, it is thus useful to synthesize these hypotheses and to discuss limitations of this simplified dynamical framework for explaining observed features.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2018

Extension of the input–output relation for a Michelson interferometer to arbitrary coherent-state light sources: Gravitational-wave detector and weak-value amplification

An extension of the input–output relation for a conventional Michelson interferometric gravitational-wave detector is carried out to treat an arbitrary coherent state for the injected optical beam. This extension is one of necessary researches toward the clarification of the relation between conventional gravitational-wave detectors and a simple model of a gravitational-wave detector inspired by weak-measurements in Nishizawa (2015). The derived input–output relation describes not only a conventional Michelson-interferometric gravitational-wave detector but also the situation of weak measurements. As a result, we may say that a conventional Michelson gravitational-wave detector already includes the essence of the weak-value amplification as the reduction of the quantum noise from the light source through the measurement at the dark port.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗
DOE OSTI2019

Strong quadrature squeezing and quantum amplification in a coupled Bose–Einstein condensate—optomechanical cavity based on parametric modulation

We consider an optomechanical cavity with a movable end-mirror as a quantum mechanical oscillator (MO) containing an interacting cigar-shaped Bose–Eisenstein condensate (BEC). It is assumed that both the MO and the BEC interact with the radiation pressure of the cavity field in the red-detuned and weak coupling regimes while the two-body atomic collisions frequency of the BEC and the mechanical spring coefficient of the MO are coherently modulated. By analyzing the scattering matrix, we show that in the largely different cooperativities regime together with strong modulations, the mechanical mode of the MO and the Bogoliubov mode of the BEC exhibit quadrature squeezing which can surpass the so-called 3dB limit (up to 75 dB) with high robustness to the thermal noises. Surprisingly, in this regime by controlling the system and modulation parameters, a very high degree of squeezing (up to 16 dB) together with high purity of quantum state for the output cavity field is achievable. Furthermore, one can attain simultaneous strong quantum amplification, added-noise suppression, and controllable gain-bandwidth for the complementary quadratures of squeezed ones in the subsystems.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗
DOE OSTI2017

An Enzyme-Free Signal Amplification Technique for Ultrasensitive Colorimetric Assay of Disease Biomarkers

Enzyme-based colorimetric assays have been widely used in research labs and clinical diagnosis for decades. Nevertheless, as constrained by the performance of enzymes, their detection sensitivity has not been substantially improved in recent years, which inhibits many critical applications such as early detection of cancers. In this work, we demonstrate an enzyme-free signal amplification technique, based on gold vesicles encapsulated with Pd-Ir nanoparticles as peroxidase mimics, for colorimetric assay of disease biomarkers with significantly enhanced sensitivity. This technique overcomes the intrinsic limitations of enzymes, thanks to the superior catalytic efficiency of peroxidase mimics and the efficient loading and release of these mimics. Using human prostate surface antigen as a model biomarker, we demonstrated that the enzyme-free assay could reach a limit of detection at the femtogram/mL level, which is over 10 3 -fold lower than that of conventional enzyme-based assay when the same antibodies and similar procedure were used.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2024

Carbon-13 Radiofrequency Amplification by Stimulated Emission of Radiation of the Hyperpolarized Ketone and Hemiketal Forms of Allyl [1- 13 C]Pyruvate

13 C hyperpolarized pyruvate is an emerging MRI contrast agent for sensing molecular events in cancer and other diseases with aberrant metabolic pathways. This metabolic contrast agent can be produced via several hyperpolarization techniques. Despite remarkable success in research settings, widespread clinical adoption faces substantial roadblocks because the current sensing technology utilized to sense this contrast agent requires the excitation of 13 C nuclear spins that also need to be synchronized with MRI field gradient pulses. Here, we demonstrate sensing of hyperpolarized allyl [1- 13 C]pyruvate via the stimulated emission of radiation that mitigates the requirements currently blocking broader adoption. Specifically, 13 C Radiofrequency Amplification by Stimulated Emission of Radiation ( 13 C RASER) was obtained after pairwise addition of parahydrogen to a pyruvate precursor, detected in a commercial inductive detector with a quality factor (Q) of 32 for sample concentrations as low as 0.125 M with 13 C polarization of 4%. Moreover, parahydrogen-induced polarization allowed for the preparation of a mixture of ketone and hemiketal forms of hyperpolarized allyl [1- 13 C]pyruvate, which are separated by 10 ppm in 13 C NMR spectra. This is a good model system to study the simultaneous 13 C RASER signals of multiple 13 C species. This system models the metabolic production of hyperpolarized [1- 13 C]lactate from hyperpolarized [1- 13 C]pyruvate, which has a similar chemical shift difference. Our results show that 13 C RASER signals can be obtained from both species simultaneously when the emission threshold is exceeded for both species. On the other hand, when the emission threshold is exceeded only for one of the hyperpolarized species, 13 C stimulated emission is confined to this species only, therefore enabling the background-free detection of individual hyperpolarized 13 C signals. Furthermore, the reported results pave the way to novel sensing approaches of 13 C hyperpolarized pyruvate, potentially unlocking hyperpolarized 13 C MRI on virtually any MRI system–an attractive vision for the future molecular imaging and diagnostics.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
DOE OSTI2023

13 C Radiofrequency Amplification by Stimulated Emission of Radiation Threshold Sensing of Chemical Reactions

Conventional nuclear magnetic resonance (NMR) enables detection of chemicals and their transformations by exciting nuclear spin ensembles with a radio-frequency pulse followed by detection of the precessing spins at their characteristic frequencies. The detected frequencies report on chemical reactions in real time and the signal amplitudes scale with concentrations of products and reactants. Here, we employ Radiofrequency Amplification by Stimulated Emission of Radiation (RASER), a quantum phenomenon producing coherent emission of 13 C signals, to detect chemical transformations. The 13 C signals are emitted by the negatively hyperpolarized biomolecules without external radio frequency pulses and without any background signal from other, nonhyperpolarized spins in the ensemble. Here, we studied the hydrolysis of hyperpolarized ethyl-[1- 13 C]acetate to hyperpolarized [1- 13 C]acetate, which was analyzed as a model system by conventional NMR and 13 C RASER. The chemical transformation of 13 C RASER-active species leads to complete and abrupt disappearance of reactant signals and delayed, abrupt reappearance of a frequency-shifted RASER signal without destroying 13 C polarization. Further, the experimentally observed “quantum” RASER threshold is supported by simulations.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
DOE OSTI2026

Helical Complex Ladder Polymer with Amplification of Asymmetry

Here, we report a Cu–salen helical complex ladder polymer (HLP-Cu) built from covalently fused Cu(Salen) units. Point chirality from enantiopure diamines directs the formation of a rigid, π-conjugated helix. Compared with a planar analogue (LLP-Cu) and the Cu(Salen) monomer, HLP-Cu exhibits up to 5-fold stronger circular dichroism and a maximum dissymmetry factor of 7.4 × 10 –3 . Titration experiments suggest a cooperative amplification of asymmetry arising from extended conjugation and helical geometry during helix formation. Time-dependent density functional theory calculations are employed to support this hypothesis, showing that increasing conjugation length and helical order enhance the rotational strength of contributing excited states via elevated magnetic transition moments and improved alignment of electric and magnetic transition moments. Our findings provide a new polymer platform for designing functional chiral materials with tunable chiroptical and spin-dependent properties.

36 MATERIALS SCIENCE↗
DOE OSTI2020

Dynamic Amplification of Subtropical Extreme Precipitation in a Warming Climate

Projected precipitation changes in a warming climate vary considerably, spatially, and between intensities. The changes can be greater or less than the ~7% K -1 Clausius-Clapeyron (CC) prediction, owing to dynamic effects. Using two global-climate-model large ensembles, we quantify the dynamically induced changes to precipitation extremes from the present (1996–2005) to late-21st-century (2071–2080) climates, as a function of recurrence interval, focusing on the subtropics. We separate non-CC changes into a term proportional to the present-day vertical-velocity spatial pattern (i.e., an amplification or damping thereof by a constant factor) and a residual. The amplitude term varies with recurrence interval, approximately canceling (doubling) CC for moderate (large) extremes, increasing precipitation variability. Contrastingly, the residual is quasi-uniform across recurrence intervals but spatially heterogeneous, weakening extremes over dry zones. This residual may be related to Hadley cell expansion, although this explanation is insufficient to explain many features, and other possible mechanisms are discussed.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2021

Atmospheric River Response to Arctic Sea Ice Loss in the Polar Amplification Model Intercomparison Project

The atmospheric river (AR) response to Arctic sea ice loss in the Northern hemisphere winter is investigated using simulations from the Polar Amplification Model Intercomparison Project. Results have shown that the midlatitude responses are dominated by dynamic effects. Poleward of around 60°N, the dynamic and thermodynamic effects cancel each other, resulting in relatively small responses. The response uncertainty can be characterized by leading uncertainty modes, with the responses over the Pacific and Atlantic projecting onto the northeastward extension and equatorward shift mode, respectively. In addition, the responses seem to be mean state-dependent: under the same forcing, models with more poleward-located climatological ARs tend to show stronger equatorward shifts over the Atlantic; over the Pacific, models with more westward-located climatological AR core tend to show stronger northeastward extensions. Finally, these relationships highlight the importance of improving the AR climatology representation on reducing the response uncertainty to Arctic sea ice loss.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2022

Annual Mean Arctic Amplification 1970–2020: Observed and Simulated by CMIP6 Climate Models

While the annual mean Arctic Amplification (AA) index varied between two and three during the 1970–2000 period, it reached values exceeding four during the first two decades of the 21st century. The AA did not change in a continuous fashion but rather in two sharp increases around 1986 and 1999. During those steps the mean global surface air temperature trend remained almost constant, while the Arctic trend increased. Although the “best” CMIP6 models reproduce the increasing trend of the AA in 1980s they do not capture the sharply increasing trend of the AA after 1999 including its rapid step-like increase. We propose that the first sharp AA increase around 1986 is due to external forcing, while the second step close to 1999 is due to internal climate variability, which models cannot reproduce in the observed time.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2024

Assessing Radiative Feedbacks and Their Contribution to the Arctic Amplification Measured by Various Metrics

Arctic amplification (AA), characterized by a more rapid surface air temperature (SAT) warming in the Arctic than the global average, is a major feature of global climate warming. Various metrics have been used to quantify AA based on SAT anomalies, trends, or variability, and they can yield quite different conclusions regarding the magnitude and temporal patterns of AA. This study examines and compares various AA metrics for their temporal consistency in the region north of 70°N from the early twentieth to the early 21st century using observational data and reanalysis products. We also quantify contributions of different radiative feedback mechanisms to AA based on short-term climate variability in reanalysis and model data using the Kernel-Gregory approach. Albedo and lapse rate feedbacks are positive and comparable, with albedo feedback being the leading contributor for all AA metrics. The net cloud feedback, which has large uncertainties, depends strongly on the data sets and AA metrics used. By quantifying the influence of internal variability on AA and related feedbacks based on global climate model ensemble simulations, we find that water vapor and cloud feedbacks are most heavily affected by internal variability.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2025

Whistler Chorus Amplification in the Magnetosphere: The Nonlinear Free‐Electron Laser Model and the Ginzburg‐Landau Equation

We present a novel nonlinear model for whistler-mode chorus amplification based on the free-electron laser (FEL) mechanism. First, we derive the nonlinear collective variable equations for the whistler-electron interaction. Consistent with in situ satellite observations, these equations predict that a small seed wave can undergo exponential growth, reaching a peak of a few hundred picoteslas after a few milliseconds, followed by millisecond timescale amplitude modulations. Next, we show that when one accounts for multiple wave frequencies and wave spatial variations, the amplitude and phase of the whistler wave can be described by the Ginzburg-Landau equation (GLE), providing a framework for the investigation of solitary wave behavior of chorus modes. These findings enhance our understanding of wave-particle interactions and space weather in the Van Allen radiation belts, deepen the connection between whistler-electron dynamics and FELs, and reveal a novel connection between whistler-mode chorus and the GLE.

Ginsburg-Landau equation↗
DOE OSTI2016

Parametric amplification of a superconducting plasma wave

Many applications in photonics require all-optical manipulation of plasma waves, which can concentrate electromagnetic energy on sub-wavelength length scales. This is difficult in metallic plasmas because of their small optical nonlinearities. Some layered superconductors support Josephson plasma waves, involving oscillatory tunnelling of the superfluid between capacitively coupled planes. Josephson plasma waves are also highly nonlinear, and exhibit striking phenomena such as cooperative emission of coherent terahertz radiation, superconductor–metal oscillations and soliton formation. In this paper, we show that terahertz Josephson plasma waves can be parametrically amplified through the cubic tunnelling nonlinearity in a cuprate superconductor. Finally, parametric amplification is sensitive to the relative phase between pump and seed waves, and may be optimized to achieve squeezing of the order-parameter phase fluctuations or terahertz single-photon devices.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗