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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 127 records · Page 7
All sourcesNASA NTRSDOE OSTI
DOE OSTI2021

TomoEncoders: 3D Autoencoders for feature extraction in X-ray tomography

Real-time steering of time-resolved or in-situ X-ray tomography requires capturing changes in morphological descriptors in a sample (e.g., porosity, particle size, and crack width) during continuous data acquisition. Image segmentation (2D or3D) followed by quantitative measurement is the conventional method for tracking changes in these descriptors with respect to a previous time-step or a 3D search in a volume. However, image segmentation is expensive. As a faster and unsupervised alternative, a feature-extraction approach using a convolutional autoencoders was developed, where the latent space of the encoder responds to relative changes in morphology with-out prior knowledge of the morphological descriptors.

TEKAWADE, ANIKET↗
DOE OSTI2023

Assessing Tropical Pacific-induced Predictability of Southern California Precipitation Using a Novel Multi-input Multi-output Autoencoder

We construct a novel Multi-Input Multi-Output Autoencoder-decoder (MIMO-AE) to capture the non-linear relationship of Southern California precipitation and tropical Pacific Ocean sea surface temperature. The MIMO-AE is trained on both monthly TP-SST and SC-PRECIP anomalies simultaneously. The co-variability of the two fields in the MIMO-AE shared nonlinear latent space can be condensed into an index, termed the MIMO-AE index. We use a transfer learning approach to train a MIMO-AE on the combined dataset of 100 years of output from a historical simulation with the Energy Exascale Earth Systems Model version 1 and a segment of observational data. We further use Long Short-Term Memory networks to assess sub-seasonal predictability of SC-PRECIP using the MIMO-AE index. We find that the MIMO-AE index provides enhanced predictability of SC-PRECIP for a lead-time of up-to four months as compared to Niño 3.4 index and the El Niño Southern Oscillation Longitudinal Index.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2024

Data for "Design of Diverse, Functional Mitochondrial Targeting Sequences Across Eukaryotic Organisms Using Variational Autoencoder"

Mitochondria play a key role in energy production and metabolism, making them a promising target for metabolic engineering and disease treatment. However, despite the known influence of passenger proteins on localization efficiency, only a few protein-localization tags have been characterized for mitochondrial targeting. To address this limitation, we leverage a Variational Autoencoder to design novel mitochondrial targeting sequences. In silico analysis reveals that a high fraction of the generated peptides (90.14%) are functional and possess features important for mitochondrial targeting. We characterize artificial peptides in four eukaryotic organisms and, as a proof-of-concept, demonstrate their utility in increasing 3-hydroxypropionic acid titers through pathway compartmentalization and improving 5-aminolevulinate synthase delivery by 1.62-fold and 4.76-fold, respectively. Moreover, we employ latent space interpolation to shed light on the evolutionary origins of dual-targeting sequences. Overall, our work demonstrates the potential of generative artificial intelligence for both fundamental research and practical applications in mitochondrial biology.

AI/ML↗
DOE OSTI2022

Removing Noise in BPM Measurements with Variational Autoencoders

Noise in beam measurements is an ever-present challenge in accelerator operations. In addition to the challenges presented by hardware and signal processing, new operational regimes, such as ultra-short bunches, create additional difficulties in routine beam measurements. Techniques in machine learning have been successfully applied in other domains to overcome challenges inherent in noisy data. Variational autoencoders (VAEs) are shown to be capable of removing significant leevels of noise. A VAE can be used as a pre-processing tool for noise removal before the de-noised data is analyzed via other methods, or the VAE can be directly used to make beam dynamics measurements. Here we present the use of VAEs as a tool for addressing noise in BPM measurements.

43 PARTICLE ACCELERATORS↗
DOE OSTI2025

Comparative Analysis of DNA LLM Classification Techniques Using Intra-Layer Feature Extraction with Autoencoder Stacks [Poster]

This project conducts a comparative analysis of DNA LLM classification techniques using Evo2, Grover, and UTRML, focusing on intra-layer feature extraction in Evo2. By extracting features from multiple layers of Evo2 and integrating them into an autoencoder stack with a binary classification head, we evaluate its effectiveness in classifying genomic sequences compared to smaller DNA language models. My findings demonstrate that Evo2 outperforms Grover and UTRML in classification accuracy on a dataset provided by department 08625, CAO2021, while UTRML offers competitive performance with lower computational costs. This study highlights the potential of advanced embedding techniques in enhancing genomic data analysis and informs future research in bioinformatics.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2026

Wasserstein Normalized Autoencoder for Anomaly Detection in ProtoDUNE Vertical-Drift Detector

ProtoDUNE Vertical Drift needs a selective triggering algorithm. The detector sits on Earth's surface, so cosmic activity dominates its data. Our goal in this paper is to trigger on neutrino events more robustly than the current deployed Analog-to-Digital Converter Simple Window (ADCSW) model and, eventually, search for signals of Beyond Standard Model (BSM) physics at DUNE as our ultimate North Star objective. As a step towards this goal, we evaluate a Wasserstein Normalized Autoencoder (WNAE) on simulated collection-plane only windows of shape $1\times10\times10$ where Neutrinos act as our BSM-proxy and Cosmic-ray Muons serve as our learned background. The network parameters are fitted using only cosmic-ray muon events as background in order to maintain an unsupervised pipeline. Training uses finite-step Langevin $x^-$ samples, positive-sample reconstruction energy, and an empirical sliced $2$-Wasserstein objective to learn a normalized Boltzmann energy model. We then calibrate on a nominal $5\,\mathrm{Hz}$ operating threshold calculated from cosmic validation data. Both WNAE and ADCSW accept 311 of 194,083 held-out cosmic background events at this $5\,\mathrm{Hz}$ threshold. We found that WNAE accepts 9,677 of 34,634 neutrino-proxy events $(27.9\pm0.24)\%$, compared with 10,076 $(29.1\pm0.24)\%$ for ADCSW, an observed WNAE-minus-ADCSW difference of $-1.15\%$. At another nominal $2\,\mathrm{Hz}$ target threshold, the corresponding efficiencies are $(20.5\pm0.22)\%$ and $(22.6\pm0.22)\%$, respectively. Of the WNAE-selected neutrino proxies at $5\,\mathrm{Hz}$, $(20.8\pm0.4)\%$ of the classified neutrino-proxy events are unique to WNAE, where the uncertainty is an absolute binomial standard error of $0.4\%$.

Zheng, Jake [U. Chicago (main)] (ORCID:00090002189↗
DOE OSTI2021

Autoencoder Based Analysis of RF Parameters in the Fermilab Low Energy Linac

Machine learning (ML) has the potential for significant impact on the modeling, operation, and control of particle accelerators due to its ability to model nonlinear behavior, interpolate on complicated surfaces, and adapt to system changes over time. Anomaly detection in particular has been highlighted as an area where ML can significantly impact the operation of accelerators. These algorithms work by identifying subtle behaviors of key variables prior to negative events. Efforts to apply ML to anomaly detection have largely focused on subsystems such as RF cavities, superconducting magnets, and losses in rings. However, dedicated efforts to understand how to apply ML for anomaly detection in linear accelerators have been limited. In this paper the use of autoencoders is explored to identify anomalous behavior in measured data from the Fermilab low-energy linear accelerator.

Edelen, Jonathan P. (ORCID:0000000215180652)↗
DOE OSTI2020

Dimensionality Reduction of SDSS Spectra with Variational Autoencoders

High-resolution galaxy spectra contain much information about galactic physics, but the high dimensionality of these spectra makes it difficult to fully utilize the information they contain. We apply variational autoencoders (VAEs), a nonlinear dimensionality reduction technique, to a sample of spectra from the Sloan Digital Sky Survey (SDSS). In contrast to principal component analysis (PCA), a widely used technique, VAEs can capture nonlinear relationships between latent parameters and the data. We find that a VAE can reconstruct the SDSS spectra well with only six latent parameters, outperforming PCA with the same number of components. Different galaxy classes are naturally separated in this latent space, without class labels having been given to the VAE. The VAE latent space is interpretable because the VAE can be used to make synthetic spectra at any point in latent space. For example, making synthetic spectra along tracks in latent space yields sequences of realistic spectra that interpolate between two different types of galaxies. Using the latent space to find outliers may yield interesting spectra: in our small sample, we immediately find unusual data artifacts and stars misclassified as galaxies. In this exploratory work, we show that VAEs create compact, interpretable latent spaces that capture nonlinear features of the data. While a VAE takes substantial time to train (≈1 day for 48,000 spectra), once trained, VAEs can enable the fast exploration of large astronomical data sets.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2021

Outlier classification using autoencoders: application for fluctuation driven flows in fusion plasmas

Understanding the statistics of fluctuation driven flows in the boundary layer of magnetically confined plasmas is desired to accurately model the lifetime of the vacuum vessel components. Mirror Langmuir probes (MLPs) are a novel diagnostic that uniquely allow us to sample the plasma parameters on a time scale shorter than the characteristic time scale of their fluctuations. Sudden large-amplitude fluctuations in the plasma degrade the precision and accuracy of the plasma parameters reported by MLPs for cases in which the probe bias range is of insufficient amplitude. While some data samples can readily be classified as valid and invalid, we find that such a classification may be ambiguous for up to 40% of data sampled for the plasma parameters and bias voltages considered in this study. In this contribution, we employ an autoencoder (AE) to learn a low-dimensional representation of valid data samples. By definition, the coordinates in this space are the features that mostly characterize valid data. Ambiguous data samples are classified in this space using standard classifiers for vectorial data. In this way, we avoid defining complicated threshold rules to identify outliers, which require strong assumptions and introduce biases in the analysis. By removing the outliers that are identified in the latent low-dimensional space of the AE, we find that the average conductive and convective radial heat fluxes are between approximately 5% and 15% lower as when removing outliers identified by threshold values. For contributions to the radial heat flux due to triple correlations, the difference is up to 40%.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗
NASA NTRSDate not supplied

High dimensional similarity search with quantum assisted variational autoencoder

Recent progress in quantum algorithms and hardware is indicator of the potential importance of quantum computing in the next future. However, finding suitable application areas remains an active area of research. Quantum machine learning [1] is touted as a potential approach to demonstrate quantum advantage within both the gate-model [2,3] and the adiabatic [4,5] schemes. For instance, the Quantum-assisted Variational Autoencoder (QVAE) [6] has been proposed as a quantum enhancement to the discrete VAE [7]. We extend on previous work and study the real-world applicability of a QVAE, specifically, for similarity search in large-scale high dimensional datasets. While similarity search algorithms are available for low dimensional datasets, scaling to billion-scale datasets with thousands of dimensions is non-trivial. We show how the latent-space representation of a QVAE can be used to construct a space-efficient search index. We back up our claims by experimental results which show a correlation between the Hamming distance in the embedded space and the Euclidean distance in the original space on the Moderate Resolution Imaging Spectroradiometer (MODIS) dataset. Further, we show real-world speedups compared to linear search and demonstrate memory efficient scaling to large-scale datasets.

Nicholas D Gao↗
NASA NTRS2021

Loss of Control Detection for Commercial Transports Using Conditional Variational Autoencoders

This work describes a detector for the loss of control of a commercial transport in flight. The detector has a belief state defined by the latent variable stochastic modeling of a conditional variational autoencoder (CVAE) constructed with bidirectional recurrent layers. In 2000, the Boeing Company and the NASA Langley Research Center jointly developed a quantitative set of metrics for defining loss-of-control (LOC) for a commercial transport. We use the thresholds for these quantitative metrics to define a condition vector for training the CVAE. We demonstrate through experimentation that reconstruction probability is an accurate indicator that the vehicle has shifted to an LOC state. Second, we introduce a technique for inferring that the vehicle is experiencing a flight state change is approaching by measuring a shift in the sampling Gaussian distributions of the latent space. We provide an analysis of its applicability to flight data from a NASA generic commercial transport-type aircraft.

Newton H Campbell↗
NASA NTRSDate not supplied

Enhancing Neural Network Decision-Making with Variational Autoencoders

Machine intelligence has been used to tackle increasingly complex problems and deep learning solutions are at the forefront of tackling these problems. In general, these architectures have a great number of parameters that are methodically updated in training. The vast number and complexity of deep neural networks makes it very difficult to decipher the inner workings of the neurons and layers that make up the network. This paper posits that trustworthiness and trust in autonomous systems are increased through eXplainable Artificial Intelligence (XAI) and presents a method that enhances the explainability and understanding of a neural network decision. We leverage variational autoencoders to produce human interpretable features from complex data sets. We show that the explainable features can then be used for machine learning applications. This explainability encourages people to be more inclined to justifiably trust machine decision-making.

Loc Tran↗
NASA NTRSDate not supplied

Enhancing Neural Network Explainability with Variational Autoencoders

Machine intelligence has been used to tackle increasingly complex problems and deep learning solutions are at the forefront of tackling these problems. In general, these architectures have a great number of parameters that are methodically updated in training. The vast number and complexity of deep neural networks makes it very difficult to decipher the inner workings of the neurons and layers that make up the network. This paper posits that trustworthiness and trust in autonomous systems are increased through eXplainable Artificial Intelligence (XAI) and presents a method that enhances the explainability and understanding of a neural network decision. We leverage variational autoencoders to produce human interpretable features from complex data sets. We show that the explainable features can then be used for machine learning applications. Explainability inspires trust in autonomous systems that use deep learning, which is necessary for safety critical systems.

Loc Tran↗
NASA NTRS2020

Tuning a variational autoencoder for data accountability problem in the Mars Science Laboratory ground data system

The Mars Curiosity rover is frequently sending back engineering and science data that goes through a pipeline of systems before reaching its final destination at the mission operations center making it prone to volume loss and data corruption. A ground data system analysis (GDSA) team is charged with the monitoring of this flow of information and the detection of anomalies in that data in order to request a re-transmission when necessary. This work presents ∆-MADS, a derivative-free optimization method applied for tuning the architecture and hyperparameters of a variational autoencoder trained to detect the data with missing patches in order to assist the GDSA team in their mission.

Lakhmiri, Dounia↗
NASA NTRSDate not supplied

Convolutional Autoencoder for Defect Detection in Additive Manufacturing

The core idea behind using machine learning (ML) for defect detection is that it can be used to detect flaws as they are being formed in an AM part. As the part is being made, a near-infrared (NIR) sensor records each layer and creates an image of the entire build layer. These images, usually thousands, can be compiled into a ‘3D’ array of the entire part. ML tools, such as a convolutional autoencoder (CAE) can go through these images and highlight potential anomalous regions of your part.

In-Situ Monitoring↗
NASA NTRS2024

Transfer-AE: A novel autoencoder-based impact detection model for structural digital twin

Accurately detecting the location and intensity of impacts is crucial for ensuring structural safety. Currently, AI-based structural impact detection methods are widely used for their excellent detection accuracy. However, their generalization capability is limited by the scenarios present in the training data. Many complex and dangerous impact scenarios are difficult to conduct real-world experiments on to collect sufficient samples. To capture all impact scenarios and fully leverage the advantages of AI-based detection technologies, advanced methods involve combining real-world structural monitoring data with corresponding numerical models to construct digital twins. These methods continuously refine the created numerical models with limited real-world data and provide diverse impact scenarios through numerical model simulations. However, there are inevitable differences between digital models and physical models that are challenging to correct through mechanical means. This discrepancy in data distribution between the two models significantly hinders the application of digital twin technology in impact/event identification tasks. To address this challenge, this study proposes a novel model based on autoencoders, named Transfer-AE. Transfer-AE encodes the common features of digital twins in the latent space to bridge the uncertainty gap at a macro scale between numerical models and physical models and synchronously fits the magnitude and location of the impact load in the decoder. This enables consistent detection results for the same impact event, whether the sample comes from the numerical model or the physical model. Transfer-AE includes two operating modes: Mode 1 has a fixed computational complexity with stable inference speed, but the training cost and difficulty increase with data distribution. Mode 2's computational complexity increases with data distribution, but it has a fixed training cost and speed. In both cases involving the geodesic dome structure simulating a deep space habitat and the IASC-ASCE benchmark structure, Transfer-AE demonstrated the best performance in impact localization and quantification tasks compared to mainstream domain-adaptive transfer models.

Chengjia Han↗
DOE OSTI2018

Generative Adversarial Network based Autoencoder: Application to fault detection problem for closed loop dynamical systems

Fault detection problem for closed loop uncertain dynamical systems, is investigated in this paper, using different deep learning based methods. Traditional classifier based method does not perform well, because of the inherent difficulty of detecting system level faults for closed loop dynamical system. Specifically, acting controller in any closed loop dynamical system, works to reduce the effect of system level faults. A novel Generative Adversarial based deep Autoencoder is designed to classify datasets under normal and faulty operating conditions. This proposed network performs significantly well when compared to any available classifier based methods, and moreover, does not require labeled fault incorporated datasets for training purpose. Finally, this aforementioned network's performance is tested on a high complexity building energy system dataset.

deep learning, Active fault detection↗