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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 127 records · Page 7

DelPlasmid: Finding Plasmids with Deep Learning and Machine Learning v1

Extrachromosomal genetic elements or plasmids are an important driver of DNA exchange and genetic innovation in prokaryotes. The success of plasmids has been attributed to their independent replication from host cell chromosomes and their frequent self-transfer. In recent years, the Department of Energy has recognized the importance of plasmid DNA to the viability and success of microbial communities and JGI has responded with funding to support the research and development of new methods and tools for the efficient sequencing of plasmid DNA. LBNL #2019-037 is responsive to this call.

Andreopoulos, William↗

Creating an Inter-Tribal Technical Assistance Network in the Northwest Arctic

The US Department of Energy-Office of Indian Energy's (DOE-IE) support for NANA's establishment of an Inter-Tribal Assistance Network in the Northwest Arctic was a ground-breaking effort that led to many individual community successes and a regional escalation of clean energy for our tribes. Before this grant award was initiated, high penetration renewable-diesel hybrid systems were primarily aspirational. Now, after five years of intensive technical assistance and multi-institution collaboration and funding, the NANA Region has three high penetration solar-wind-battery-diesel hybrid systems and one solar-battery-diesel hybrid system fully operational with diesel-off operation occurring regularly; another solar-battery-diesel hybrid system fully funded with an RFP for construction targeted for 2023; a current grant application that was awarded to begin the final design process for solar-battery-diesel hybrid systems for four other villages in the region; and initial funding to begin a high penetration wind-battery-diesel system for the remaining village in the region. Clearly, our goal to demonstrate and replicate high penetration renewable hybrid technology has been accomplished and is increasing in scale and pace.

29 ENERGY PLANNING, POLICY, AND ECONOMY↗

Geology and climate influence rhizobiome composition of the phenotypically diverse tropical tree Tabebuia heterophylla

Plant-associated microbial communities have diverse phenotypic effects on their hosts that are only beginning to be revealed. We hypothesized that morpho-physiological variations in the tropical tree Tabebuia heterophylla, observed on different geological substrates, arise in part due to microbial processes in the rhizosphere. We characterized the microbiota of the rhizosphere and soil communities associated with T. heterophylla trees in high and low altitude sites (with varying temperature and precipitation) of volcanic, karst and serpentine geologies across Puerto Rico. We sampled 6 areas across the island in three geological materials including volcanic, serpentine and karst soils. Collection was done in 2 elevations (>450m and 0-300m high), that included 3 trees for each site and 4 replicate soil samples per tree of both bulk and rhizosphere. Genomic DNA was extracted from 144 samples, and 16S rRNA V4 sequencing was performed on the Illumina MiSeq platform. Proteobacteria, Actinobacteria, and Verrucomicrobia were the most dominant phyla, and microbiomes clustered by geological substrate and elevation. Volcanic samples were enriched in Verrucomicrobia; karst was dominated by nitrogen-fixing Proteobacteria, and serpentine sites harbored the most diverse communities, with dominant Cyanobacteria. Sites with similar climates but differing geologies showed significant differences on rhizobiota diversity and composition demonstrating the importance of geology in shaping the rhizosphere microbiota, with implications for the plant's phenotype. Our study sheds light on the combined role of geology and climate in the rhizosphere microbial consortia, likely contributing to the phenotypic plasticity of the trees.

59 BASIC BIOLOGICAL SCIENCES↗

Annoyance by aircraft noise and fear of overflying aircraft in relation to attitudes toward the environment and community

It has been suggested that expressions of annoyance attributable to aircraft noise may reflect in part fear of aircraft overflights and possible crashes. If this is true, then residents of areas where crashes have occurred should express more annoyance. To test this hypothesis, 50 residents of an Albany, New York area where an aircraft crash producing fatalities recently occurred and 50 residents of a comparable nearby area without such a history, were asked to respond to a 'Quality of Life Questionnaire.' Among the items were some designed to test annoyance by noise and fear of aircraft overflights. It was predicted that those in the crash area would express more fear and would more often identify aircraft as a noise source. These hypotheses were sustained. A near-replication was carried out in Louisville, Kentucky; results were much the same. Analyses indicated that for the crash-area groups, there was associating of aircraft fear and noise annoyance responses; this was true to an apparently lesser extent for non-crash groups. The greater annoyance of crash groups by aircraft community noise apparently does not carry over to situations in which aircraft noise is assessed in the laboratory.

Loeb, M.↗

Intermountain West Wildland Fires: Mapping Tree Mortality and Burn Patches using NASA Earth Observations to Determine Fire Risk and Inform Fire Management Practices

Within the intermountain west, monitoring fuel loads is a major concern for wildland fire management efforts. To address this concern, we partnered with the U.S. Forest Service to inform the agency which forested areas should be prioritized for prescribed burning and fuel reduction near human communities in the Bridger-Teton National Forest, Wyoming. We created burn maps, fuel load maps, and a tutorial document to identify forest impact trends and provide the partner with the tools to replicate project methods for expansion to other wildfire crisis strategy sites. These end products were made using two NASA Earth observations: Landsat 8 Operational Land Imager and Shuttle Radar Topography Mission. Based on our random forest analysis, our maps identified 998 acres within the Wildland Urban Interface that are predicted to have high fuel loading and high burn severity within the Bridger-Teton National Forest. Forested areas closer to heavily populated areas such as Jackson, Kelly, Moran, New Forks Lake, and Star Valley Ranch should be prioritized for fuel reduction. However, our random forest model analysis was limited to using vegetation and topographical indices with no field data for model validation. Therefore, future studies should use field data for model validation to improve model accuracy and additionally incorporate Global Ecosystem Dynamics Investigation data into models to create better predictions of forested areas with high fuel load and high burn severity.

Remote Sensing↗

The HEROIX Broadband X-Ray Space Telescope Mission Concept

The High EneRgy Observatory for Imaging X-rays (HEROIX) Medium-Class Mission concept envisions a next-generation broadband X-ray observatory designed to meet the astrophysics community’s need for high-angular-resolution studies of the Cosmic X-ray Background. Building on the science legacy of NASA’s NuSTAR mission and more than 30 years of advances in replicated NiCo shell technology at NASA Marshall, HEROIX proposes a space observatory comprising four co-aligned telescopes achieving 5 arcsecond half-power diameter (HPD) angular resolution. This capability, approached by the resolution demonstrated in the FOXSI-4 sounding rocket mission and under development through the SuperHERO balloon mission, will be extended to energies up to 80 keV through multilayer coatings. Marshall’s inhouse precision optics manufacturing enables an integrated effective area of 380 cm² at 30 keV, which, combined with high-resolution optics, opens new windows into extreme astrophysical non-thermal processes.

Nick Thomas↗

Ultra-sensitive isotope probing to quantify activity and substrate assimilation in microbiomes

Abstract Background Stable isotope probing (SIP) approaches are a critical tool in microbiome research to determine associations between species and substrates, as well as the activity of species. The application of these approaches ranges from studying microbial communities important for global biogeochemical cycling to host-microbiota interactions in the intestinal tract. Current SIP approaches, such as DNA-SIP or nanoSIMS allow to analyze incorporation of stable isotopes with high coverage of taxa in a community and at the single cell level, respectively, however they are limited in terms of sensitivity, resolution or throughput. Results Here, we present an ultra-sensitive, high-throughput protein-based stable isotope probing approach (Protein-SIP), which cuts cost for labeled substrates by 50–99% as compared to other SIP and Protein-SIP approaches and thus enables isotope labeling experiments on much larger scales and with higher replication. The approach allows for the determination of isotope incorporation into microbiome members with species level resolution using standard metaproteomics liquid chromatography-tandem mass spectrometry (LC–MS/MS) measurements. At the core of the approach are new algorithms to analyze the data, which have been implemented in an open-source software ( https://sourceforge.net/projects/calis-p/ ). We demonstrate sensitivity, precision and accuracy using bacterial cultures and mock communities with different labeling schemes. Furthermore, we benchmark our approach against two existing Protein-SIP approaches and show that in the low labeling range used our approach is the most sensitive and accurate. Finally, we measure translational activity using 18 O heavy water labeling in a 63-species community derived from human fecal samples grown on media simulating two different diets. Activity could be quantified on average for 27 species per sample, with 9 species showing significantly higher activity on a high protein diet, as compared to a high fiber diet. Surprisingly, among the species with increased activity on high protein were several Bacteroides species known as fiber consumers. Apparently, protein supply is a critical consideration when assessing growth of intestinal microbes on fiber, including fiber-based prebiotics. Conclusions We demonstrate that our Protein-SIP approach allows for the ultra-sensitive (0.01 to 10% label) detection of stable isotopes of elements found in proteins, using standard metaproteomics data.

59 BASIC BIOLOGICAL SCIENCES↗

Extending Rucio with modern cloud storage support

Rucio is a software framework designed to facilitate scientific collaborations in efficiently organising, managing, and accessing extensive volumes of data through customizable policies. The framework enables data distribution across globally distributed locations and heterogeneous data centres, integrating various storage and network technologies into a unified federated entity. Rucio offers advanced features like distributed data recovery and adaptive replication, and it exhibits high scalability, modularity, and extensibility. Originally developed to meet the requirements of the high-energy physics experiment ATLAS, Rucio has been continuously expanded to support LHC experiments and diverse scientific communities. Recent R&D projects within these communities have evaluated the integration of both private and commercially-provided cloud storage systems, leading to the development of additional functionalities for seamless integration within Rucio. Furthermore, the underlying systems, FTS and GFAL/Davix, have been extended to cater to specific use cases. This contribution focuses on the technical aspects of this work, particularly the challenges encountered in building a generic interface for self-hosted cloud storage, such as MinIO or CEPH S3 Gateway, and established providers like Google Cloud Storage and Amazon Simple Storage Service. Additionally, the integration of decentralised clouds like SEAL is explored. Key aspects, including authentication and authorisation, direct and remote access, throughput and cost estimation, are highlighted, along with shared experiences in daily operations.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Data and scripts associated with a manuscript investigating dissolved organic matter and microbial community linkages across seven globally distributed rivers

This data package is associated with the publication “Meta-metabolome ecology reveals that geochemistry and microbial functional potential are linked to organic matter development across seven rivers” submitted to Science of the Total Environment. This data package includes the data necessary to replicate the analyses presented within the manuscript to investigate dissolved organic matter (DOM) development across broad spatial distances and within divergent biomes. Specifically, we included the Fourier transform ion cyclotron mass spectrometry (FTICR-MS) data, geochemistry data, annotated metagenomic data, and results from ecological null modeling analyses in this data package. Additionally, we included the scripts necessary to generate the figures from the manuscript. Complete metagenomic data associated with this data package can be found at the National Center for Biotechnology (NCBI) under Bioproject PRJNA946291. This dataset consists of (1) four folders; (2) a file-level metadata (flmd) file; (3) a data dictionary (dd) file; (4) a factor sheet describing samples; and (5) a readme. The FTICR Data folder contains (1) the processed Fourier transform ion cyclotron mass spectrometry (FTICR-MS) data; (2) a transformation-weighted characteristics dendrogram generated from the FTICR-MS data; and (3) the script used to generate all FTICR-MS related figures. The Geochemical Data folder contains (1) the single geochemistry data file and (2) the R script responsible for generating associated figures. The Metagenomic Data folder contains (1) annotation information across different levels; (2) carbohydrate active enzyme (CAZyme) information from the dbCAN database (Yin et al., 2012); (3) phylogenetic tree data (FASTAs, alignments, and tree file); and (4) the scripts necessary to analyze all of these data and generate figures. The Null Modeling Data folder contains (1) data generated during null modeling for each river and all rivers combined and (2) the R scripts necessary to process the data. All files are .csv, .pdf, .tsv, .tre, .faa, .afa, .tree, or .R.

54 ENVIRONMENTAL SCIENCES↗

Data from: Nitrous oxide emissions during establishment of eight alternative cellulosic bioenergy cropping systems in the North Central United States

Greenhouse gas (GHG) emissions from soils are a key sustainability metric of cropping systems. During crop establishment, disruptive land-use change is known to be a critical, but under reported period, for determining GHG emissions. We measured soil N2O emissions and potential environmental drivers of these fluxes from a three-year establishment-phase bioenergy cropping systems experiment replicated in southcentral Wisconsin (ARL) and southwestern Michigan (KBS). Cropping systems treatments were annual monocultures (continuous corn, corn–soybean–canola rotation), perennial monocultures (switchgrass, miscanthus, and poplar), and perennial polycultures (native grass mixture, early successional community, and restored prairie) all grown using best management practices specific to the system. Cumulative three-year N2O emissions from annuals were 142% higher than from perennials, with fertilized perennials 190% higher than unfertilized perennials. Emissions ranged from 3.1 to 19.1 kg N2O-N ha−1 yr−1 for the annuals with continuous corn > corn–soybean–canola rotation and 1.1 to 6.3 kg N2O-N ha−1 yr−1 for perennials. Nitrous oxide peak fluxes typically were associated with precipitation events that closely followed fertilization. Bayesian modeling of N2O fluxes based on measured environmental factors explained 33% of variability across all systems. Models trained on single systems performed well in most monocultures (e.g., R2 = 0.52 for poplar) but notably worse in polycultures (e.g., R2 = 0.17 for early successional, R2 = 0.06 for restored prairie), indicating that simulation models that include N2O emissions should be parameterized specific to particular plant communities. Our results indicate that perennial bioenergy crops in their establishment phase emit less N2O than annual crops, especially when not fertilized. These findings should be considered further alongside yield and other metrics contributing to important ecosystem services.

09 BIOMASS FUELS↗

Effects of warming and drying of soils on the ectomycorrhizal community of a mixed Pinus contorta/Picea engelmannii stand in Yellowstone Park

Restriction Fragment Length Polymorphisms (RFLPs) analyses were used to determine patterns of change in ectomycorrhizal community structure response to seasonal warming and drying of soils. Soil cores (42 total, 21 from cold and wet soil in early June, and 21 from dry, warm soil in late August) were collected from replicate blocks in a mixed-conifer forest stand in Yellowstone. Results indicated no significant differences in species richness (2.62 species/core, SE 0.2 in June; 3.25, SE 0.2 in August), however there was a significant effect on ectomycorrhizal infection (P<0.05), mean number of EM tips/core was significantly lower in June (185.8, SE 34) than in August (337 SE 78). Data indicated no difference in overall EM fungal species composition, however among system dominants, two species (Cortinarius 9 and Cortinarius 10) were more abundant in August than in June (P<0.02). The remaining dominant fungal species exhibited no differences in relative abundance. Results are discussed in relation to soil fertility and composition.

Cullings, Kenneth↗

Solar Market Pathways Final Report

The Solar Market Pathways program supported the development of successful and replicable solar deployment plans and strategies, and inspired and helped others across the country initiate or improve their own solar strategies based on lessons learned and promising practices. This report shares how the Institute for Sustainable Communities (ISC), as the national coordinator, created and fostered a strong peer network that enabled the transfer of ideas, peer support, and lessons learned between Solar Market Pathways projects. This network accelerated learning and allowed awardees to advance their innovations—building on each other’s successes and mistakes, and effectively streamlining resource use. Within this report, we document the project results and impacts of Solar Market Pathways, which are broad reaching and include jump-starting the community solar market in the Chicago region, creating comprehensive deployment plans in nascent markets in Duluth and Utah, facilitating regional market development in the northeast, and using solar+storage to build community resilience in cities like New York and San Francisco.

14 SOLAR ENERGY↗

The Use of Returned Martian Samples to Evaluate the Possibility of Extant Life on Mars

The formal life-related objective of the M-2020 sample-collecting rover is to seek the signs of ancient life. The rover will not enter ''special regions'' on Mars where Earth life may replicate or extant Martian life forms are likely to exist. Therefore, returned samples will not specifically be chosen for the purpose of discovering extant life unless something unexpected is encountered in the field. Regardless, the astrobiological community is highly interested investigating whether or not there is extant life in/on these samples.

Source record↗

Community-Scale Solar Deployment in the Northwest Arctic

NANA Regional Corporation (NRC, or NANA) was formed as an Alaska Native Corporation (ANC) pursuant to the Alaska Native Claims Settlement Act of 1971. Our lands cover 39,000 square miles of the Northwest Arctic region of Alaska. We partner closely with the Northwest Arctic Borough (NAB) and our 11 remote communities on numerous projects and activities, especially around clean energy initiatives that improve quality of life and help to reduce extremely high energy costs experienced by the communities in our region. Collectively, the regional partnership has developed numerous successful solar, wind, biomass, and energy storage, distribution upgrade, and efficiency projects. To further progress, we created the Northwest Arctic Energy Steering Committee to share and replicate these benefits across the region. NANA’s mission is to provide economic opportunities for our more than 13,500 Iñupiat shareholders and to protect and enhance NANA lands.

14 SOLAR ENERGY↗

Implementation and Performance Evaluation of a Community-Scale Adobe Evaporative Cooling Chamber for Vegetable Preservation

The construction of evaporative coolers in remote areas can increase the longevity of vegetables, improving food security and the local economy of small farmers in remote, impoverished communities without access to electricity. This work presents a 1:1 scale prototype of an 8 m 3 (2.1 × 2.1 × 2.3 m) stabilized adobe evaporative cooler, with a design based on the appropriate technology framework, and it was built as a chamber using double adobe walls, filled with wet sand, to induce evaporative cooling. Furthermore, the paper presents the prototype’s performance evaluation. The tests were carried out in the dry and wet states, with different volumes of water. The results show good performance compared with other prototypes, although the optimum watering volume could not be determined because of the high climate variance (outside temperature and humidity) that prevented the repetition of the experiments in identical operating conditions. Stabilized adobe proved to be a good choice for use in the cooler, even when subject to moisture accumulation, indicating an estimated long lifetime for the cooler. The data obtained about the efficiency of evaporative cooling show that the cooler, as expected, has its best performance on the hottest and driest days, reducing the internal temperature (up to 13.24 °C) and managing to keep the internal humidity. The cost, efficiency, durability, and replicability make the proposed evaporative cooler a feasible solution for food preservation.

42 ENGINEERING↗

On the Links Between Ice Nucleation, Cloud Phase, and Climate Sensitivity in CESM2

Ice nucleation in mixed-phase clouds has been identified as a critical factor in projections of future climate. Here we explore how this process influences climate sensitivity using the Community Earth System Model 2 (CESM2). We find that ice nucleation affects simulated cloud feedbacks over most regions and levels of the troposphere, not just extratropical low clouds. However, with present-day global mean cloud phase adjusted to replicate satellite retrievals, similar total cloud feedback is attained whether ice nucleation is simulated as aerosol-sensitive, insensitive, or absent. These model experiments all result in a strongly positive total cloud feedback, as in the default CESM2. A microphysics update from CESM1 to CESM2 had substantially weakened ice nucleation, due partly to a model issue. Our findings indicate that this update reduced global cloud phase bias, with CESM2's high climate sensitivity reflecting improved mixed-phase cloud representation.

54 ENVIRONMENTAL SCIENCES↗

Development of Simplified Model Test Methods for Creep-Fatigue Evaluation

The Simplified Model Test (SMT) approach is an alternative creep-fatigue evaluation method that no longer requires the use of the damage interaction diagram, or D-diagram. The reason is that the combined effects of creep and fatigue are accounted for in the test data by means of a SMT specimen that is designed to replicate or bound the stress and strain redistribution that occurs in actual components when loaded in the creep regime. However, creep-fatigue experiments on SMT key feature articles are specialized and difficult to perform by the general research community. In this paper, two innovative SMT based creep-fatigue experimental methods are developed and implemented. These newly-developed SMT test methods have resolved all the critical challenges in the SMT key feature article testing and enable the potential of further development of the SMT based creep-fatigue evaluation method into a standard testing method. Scoping test results on Alloy 617 and SS 316H using the newly developed SMT methods are summarized and discussed. The concepts of the SMT methodology for creep-fatigue evaluation are explained.

Wang, Yanli↗