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DOE OSTI2021

Pre-Cambrian roots of novel Antarctic cryptoendolithic bacterial lineages

Cryptoendolithic communities are microbial ecosystems dwelling inside porous rocks that are able to persist at the edge of the biological potential for life in the ice-free areas of the Antarctic desert. These regions include the McMurdo Dry Valleys, often accounted as the closest terrestrial counterpart of the Martian environment and thought to be devoid of life until the discovery of these cryptic life-forms. Despite their interest as a model for the early colonization by living organisms of terrestrial ecosystems and for adaptation to extreme conditions of stress, little is known about the evolution, diversity, and genetic makeup of bacterial species that reside in these environments. Using the Illumina Novaseq platform, we generated the first metagenomes from rocks collected in Continental Antarctica over a distance of about 350 km along an altitudinal transect from 834 up to 3100 m above sea level (a.s.l.). A total of 497 draft bacterial genome sequences were assembled and clustered into 269 candidate species that lack a representative genome in public databases. Actinobacteria represent the most abundant phylum, followed by Chloroflexi and Proteobacteria. The “Candidatus Jiangella antarctica” has been recorded across all samples, suggesting a high adaptation and specialization of this species to the harshest Antarctic desert environment. The majority of these new species belong to monophyletic bacterial clades that diverged from related taxa in a range from 1.2 billion to 410 Ma and are functionally distinct from known related taxa. Our findings significantly increase the repertoire of genomic data for several taxa and, to date, represent the first example of bacterial genomes recovered from endolithic communities. Their ancient origin seems to not be related to the geological history of the continent, rather they may represent evolutionary remnants of pristine clades that evolved across the Tonian glaciation. These unique genomic resources will underpin future studies on the structure, evolution, and function of these ecosystems at the edge of life.

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2020

Rainfall manipulation experiments as simulated by terrestrial biosphere models: Where do we stand?

Changes in rainfall amounts and patterns have been observed and are expected to continue in the near future with potentially significant ecological and societal consequences. Modelling vegetation responses to changes in rainfall is thus crucial to project water and carbon cycles in the future. In this study, we present the results of a new model-data intercomparison project, where we tested the ability of 10 terrestrial biosphere models to reproduce the observed sensitivity of ecosystem productivity to rainfall changes at 10 sites across the globe, in nine of which, rainfall exclusion and/or irrigation experiments had been performed. The key results are as follows: (a) Inter-model variation is generally large and model agreement varies with timescales. In severely water-limited sites, models only agree on the interannual variability of evapotranspiration and to a smaller extent on gross primary productivity. In more mesic sites, model agreement for both water and carbon fluxes is typically higher on fine (daily–monthly) timescales and reduces on longer (seasonal–annual) scales. (b) Models on average overestimate the relationship between ecosystem productivity and mean rainfall amounts across sites (in space) and have a low capacity in reproducing the temporal (interannual) sensitivity of vegetation productivity to annual rainfall at a given site, even though observation uncertainty is comparable to inter-model variability. (c) Most models reproduced the sign of the observed patterns in productivity changes in rainfall manipulation experiments but had a low capacity in reproducing the observed magnitude of productivity changes. Models better reproduced the observed productivity responses due to rainfall exclusion than addition. (d) All models attribute ecosystem productivity changes to the intensity of vegetation stress and peak leaf area, whereas the impact of the change in growing season length is negligible. Finally, the relative contribution of the peak leaf area and vegetation stress intensity was highly variable among models.

54 ENVIRONMENTAL SCIENCES↗

NASA NTRS2000

The Dynamics of a Semi-Arid Region in Response to Climate and Water - Use Policy

The objectives of this project were to determine the response of semi-arid ecosystems to the combined forcings of climate variability and anthropogenic stress. Arid and semi-arid systems encompass close to 40% of the worlds land surface. The ecology of these regions are principally limited by water, and as the water resources wax and wane, so should the health and vigor of the ecosystems. Water, however, is a necessary and critical resource for humans living in these same regions. Thus for many and and semi-arid regions the natural systems and human systems are in direct competition for a limited resource. Increasing competition through development of and and semi-arid regions, export of water resources, as well as potential persistent changes in weather patterns are likely to lead to fundamental changes in carrying capacity, resilience, and ecology of these regions. A detailed understanding of these systems respond to forcing on a regional and local scale is required in order to better prepare for and manage future changes in the availability of water. In the Owens Valley CA, decadal changes in rainfall and increased use of groundwater resources by Los Angles (which derives 60-70% of its water from this region) have resulted in a large-scale experiment on the impacts of these changes in semi-arid ecosystems. This project works directly with the Inyo County Water Department (local water authority) and the Los Angles Department of Water and Power (regional demand on water resources) to understand changes, their causes, and impacts. Very detailed records have been kept for a number of selected sites in the valley which provide essential ground truth. These results are then scaled up through remote sensed data to regions scale to assess large scale patterns and link them to the fundamental decisions regarding the water resources of this region. A fundamental goal is to understand how resilient the native ecosystems are to large changes in water resources. Are they are on a spring (remove and return resources, do the systems return to the original state) or a vector (when water returns have the systems fundamentally changed).

Mustard, John F.↗

DOE OSTI2023

AmeriFlux FLUXNET-1F US-Ton Tonzi Ranch

This is the AmeriFlux Management Project (AMP) created FLUXNET-1F version of the carbon flux data for the site US-Ton Tonzi Ranch. This is the FLUXNET version of the carbon flux data for the site US-Ton Tonzi Ranch produced by applying the standard ONEFlux (1F) software. Site Description - The Tonzi Ranch is located on the lower foothills of the Sierra Nevada Mountains. The site is classified as an oak savanna woodland (Davis et al, 2016) and is situated on privately owned land. This site is representative of the oak savanna ecosystem that rings the Great Central Valley of California and inhabits the lower reaches of the Sierra Nevada foothills. This ecosystem is a natural laboratory for studying how ecosystem scale carbon and water fluxes respond to environmental change. The temperatures range between 0 and 40 C, the autumn, winter and spring are wet and cool, while the summer growing season is hot, dry and rainless. The overstory is dominated by blue oak trees (40% of total vegetation) with intermittent grey pine trees (3 trees/ha). Understory species include a variety of grasses and herbs, including purple false brome, smooth cat's ear, and rose clover. These two distinctive layers operate in and out of phase from one another. Growing season of the understory is confined to the wet season only, typically from October to early May. In contrast, the deciduous blue oak trees are dormant and leafless during the rainy winter months. The trees tend to leaf out in March and reach maximum LAI in April. During the rainless summers, the grasses in the understory die and the leaves experience soil moisture deficit stress References Davis, F., et al. (2016). "Oak woodlands." Ecosystems of California: 509–529.

Ma, Siyan↗

NASA NTRS2016

Photosynthetic Efficiency of Northern Forest Ecosystems Using a MODIS-Derived Photochemical Reflectance Index (PRI)

This study evaluates a direct remote sensing approach from space for the determination of ecosystem photosynthetic light use efficiency (LUE), through measurement of vegetation reflectance changes expressed with the Photochemical Reflectance Index (PRI). The PRI is a normalized difference index based on spectral changes at a physiologically active wavelength (approximately 531 nanometers) as compared to a reference waveband, and is only available from a very few satellites. These include the two Moderate-Resolution Imaging Spectroradiometers (MODIS) on the Aqua and Terra satellites each of which have a narrow (10-nanometer) ocean band centered at 531 nanometers. We examined several PRI variations computed with candidate reference bands, since MODIS lacks the traditional 570-nanometer reference band. The PRI computed using MODIS land band 1 (620-670 nanometers) gave the best performance for daily LUE estimation. Through rigorous statistical analyses over a large image collection (n equals 420), the success of relating in situ daily tower-derived LUE to MODIS observations for northern forests was strongly influenced by satellite viewing geometry. LUE was calculated from CO2 fluxes (moles per moles of carbon absorbed quanta) measured at instrumented Canadian Carbon Program flux towers in four Canadian forests: a mature fir site in British Columbia, mature aspen and black spruce sites in Saskatchewan, and a mixed deciduous/coniferous forest site in Ontario. All aspects of the viewing geometry had significant effects on the MODIS-PRI, including the view zenith angle (VZA), the view azimuth angle, and the displacement of the view azimuth relative to the solar principal plane, in addition to illumination related variables.Nevertheless, we show that forward scatter sector views (VZA, 16 degrees-45 degrees) provided the strongest relationships to daily LUE, especially those collected in the early afternoon by Aqua (r squared = 0.83, RMSE (root mean square error) equals 0.003 moles per moles of carbon absorbed quanta). Nadir (VZA, 0 degrees plus or minus 15 degrees) and backscatter views (VZA, −16 degrees to −45 degrees) had lower performance in estimating LUE (nadir: r squared approximately equal to 0.62-0.67; backscatter: r squared approximately equal to 0.54-0.59) and similar estimation error (RMSE equals 0.004-0.005).When directional effects were not considered, only a moderately successful MODIS-PRI vs. LUE relationship (r squared equals 0.34, RMSE equals 0.007) was obtained in the full dataset (all views & sites, both satellites), but site-specific relationships were able to discriminate between coniferous and deciduous forests. Overall, MODIS-PRI values from Terra (late morning) were higher than those from Aqua (early afternoon), before/after the onset of diurnal stress responses expressed spectrally. Therefore, we identified ninety-two Terra-Aqua "same day" pairs, for which the sum of Terra morning and Aqua afternoon MODIS-PRI values (PRI (sub sum) using all available directional observations was linearly correlated with daily tower LUE (r squared equals 0.622, RMSE equals 0.013) and independent of site differences or meteorological information. Our study highlights the value of off-nadir directional reflectance observations, and the value of pairing morning and afternoon satellite observations to monitor stress responses that inhibit carbon uptake in Canadian forest ecosystems. In addition, we show that MODIS-PRI values, when derived from either: (i) forward views only, or (ii) Terra/Aqua same day (any view) combined observations, provided more accurate estimates of tower-measured daily LUE than those derived from either nadir or backscatter views or those calculated by the widely used semi-operational MODIS GPP model (MOD17) which is based on a theoretical maximum LUE and environmental data. Consequently, we demonstrate the importance of diurnal as well as off-nadir satellite observations for detecting vegetation physiological processes.

Middleton, E. M.↗

NASA NTRS2022

Bryce Canyon Water Resources: Monitoring Vegetation Health and Water Availability in Bryce Canyon National Park for Drought Stress Mitigation Planning

Bryce Canyon National Park is home to groundwater-dependent ecosystems (GDEs) that are threatened by a multidecadal drought and increased groundwater extraction due to a spike in tourism. These ecosystems contain unique species that are only found in areas where near-surface groundwater is present, such as aspen groves and fens. These species contribute to the high biodiversity found in Bryce Canyon, which boosts an ecosystem’s productivity and the services it provides to the park. Unfortunately, many of these GDEs are too small to identify with traditional Earth observation platforms and are difficult to physically reach for monitoring purposes. This project partnered with the National Park Service to identify springs and seeps as a proxy for GDEs within Bryce Canyon from 2013–2022. Furthermore, this project tested the feasibility of various methods to detect and monitor springs and seeps and therefore facilitate the partner’s efforts to conserve these ecologically valuable GDEs in Bryce Canyon. The team mapped groundwater discharge with high resolution National Agriculture Imagery Program (NAIP) and assessed park vegetation trends with Landsat 8 Operational Land Imager (OLI) and PlanetScope imagery. In-situ precipitation data and the Western Land Data Assimilation System (WLDAS) were used to produce time series of climatic variables. Seeps and spring locations were predicted using random forest classification and maximum entropy machine learning models.

Groundwater dependent ecosystems↗

NASA NTRSDate not supplied

Monitoring Vegetation Health and Water Availability in Bryce Canyon National Park for Drought Stress Mitigation Planning

Bryce Canyon National Park is home to groundwater-dependent ecosystems (GDEs) that are threatened by a multidecadal drought and increased groundwater extraction due to a spike in tourism. These ecosystems contain unique species that are only found in areas where near-surface groundwater is present, such as aspen groves and willows. GDEs contribute to the high biodiversity found in Bryce Canyon, which boosts an ecosystem’s productivity and increases the overall ecological health of the park. Unfortunately, many GDEs in this area are too small to identify with traditional Earth observation platforms and are difficult to physically reach for identification and monitoring. NASA DEVELOP partnered with the National Park Service to establish a framework that both identified and assessed the health of GDEs within Bryce Canyon from 2013–2022. The team used high-resolution PlanetScope and Landsat 8 Operational Land Imager (OLI) to map springs, seeps, and GDEs. Modeled data from the Western Land Data Assimilation System (WLDAS) and in situ precipitation data were used to produce time series of climatic variables for the National Park Service to gain an understanding of how the GDEs are changing with the ongoing drought. This study is essential to the goal of the National Park Service to conserve the health of these GDEs.

Aaron Carr↗

DOE OSTI2021

The effect of increasing temperature on crop photosynthesis: from enzymes to ecosystems

Abstract As global land surface temperature continues to rise and heatwave events increase in frequency, duration, and/or intensity, our key food and fuel cropping systems will likely face increased heat-related stress. A large volume of literature exists on exploring measured and modelled impacts of rising temperature on crop photosynthesis, from enzymatic responses within the leaf up to larger ecosystem-scale responses that reflect seasonal and interannual crop responses to heat. This review discusses (i) how crop photosynthesis changes with temperature at the enzymatic scale within the leaf; (ii) how stomata and plant transport systems are affected by temperature; (iii) what features make a plant susceptible or tolerant to elevated temperature and heat stress; and (iv) how these temperature and heat effects compound at the ecosystem scale to affect crop yields. Throughout the review, we identify current advancements and future research trajectories that are needed to make our cropping systems more resilient to rising temperature and heat stress, which are both projected to occur due to current global fossil fuel emissions.

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2021

Detecting forest response to droughts with global observations of vegetation water content

Droughts in a warming climate have become more common and more extreme, making understanding forest responses to water stress increasingly pressing. Analysis of water stress in trees has long focused on water potential in xylem and leaves, which influences stomatal closure and water flow through the soil-plant-atmosphere continuum. At the same time, changes of vegetation water content (VWC) are linked to a range of tree responses, including fluxes of water and carbon, mortality, flammability, and more. Unlike water potential, which requires demanding in situ measurements, VWC can be retrieved from remote sensing measurements, particularly at microwave frequencies using radar and radiometry. Here, we highlight key frontiers through which VWC has the potential to significantly increase our understanding of forest responses to water stress. To validate remote sensing observations of VWC at landscape scale and to better relate them to data assimilation model parameters, we introduce an ecosystem-scale analogue of the pressure-volume curve, the non-linear relationship between 44 average leaf or branch water potential and water content commonly used in plant hydraulics. The 45 sources of variability in these ecosystem-scale pressure-volume curves and their relationship to 46 forest response to water stress are discussed. We further show to what extent diel, seasonal, and 47 decadal dynamics of VWC reflect variations in different processes relating the tree response to 48 water stress. VWC can also be used for inferring belowground conditions – which are difficult to 49 impossible to observe directly. Lastly, we discuss how a dedicated geostationary spaceborne 50 observational system for VWC, when combined with existing datasets, can capture diel and 51 seasonal water dynamics to advance the science and applications of global forest vulnerability to 52 future droughts.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2024

2024 OES-Environmental 2024 State of the Science Report, Chapter 3: Marine Renewable Energy: Stressor-Receptor Interactions

Determining the potential effects of marine renewable energy (MRE) development on the ocean requires consideration of how each component of a tidal, wave, riverine, or other MRE system might affect marine animals, habitats that support marine communities, or processes that make up essential oceanographic and ecological systems. Researchers around the world have been assessing the potential effects of MRE deployments and operations using a variety of instruments, models, analytical methods, and approaches. The most common approach, and the one followed throughout this report, is the framework of stressor-receptor interactions (Boehlert & Gill 2010), where stressors are the components of an MRE device and associated system that may cause stress, injury, or death to a marine animal, habitat, or ecosystem. The receptors are the species, their habitats, and the oceanographic and ecological processes that support them.

16 TIDAL AND WAVE POWER↗

NASA NTRS2016

Very High Spectral Resolution Imaging Spectroscopy: the Fluorescence Explorer (FLEX) Mission

The Fluorescence Explorer (FLEX) mission has been recently selected as the 8th Earth Explorer by the European Space Agency (ESA). It will be the first mission specifically designed to measure from space vegetation fluorescence emission, by making use of very high spectral resolution imaging spectroscopy techniques. Vegetation fluorescence is the best proxy to actual vegetation photosynthesis which can be measurable from space, allowing an improved quantification of vegetation carbon assimilation and vegetation stress conditions, thus having key relevance for global mapping of ecosystems dynamics and aspects related with agricultural production and food security. The FLEX mission carries the FLORIS spectrometer, with a spectral resolution in the range of 0.3 nm, and is designed to fly in tandem with Copernicus Sentinel-3, in order to provide all the necessary spectral / angular information to disentangle emitted fluorescence from reflected radiance, and to allow proper interpretation of the observed fluorescence spatial and temporal dynamics.

Moreno, Jose F.↗

DOE OSTI2022

Photobiological production of high-value pigments via compartmentalized co-cultures using Ca-alginate hydrogels

Abstract Engineered cyanobacterium Synechococcus elongatus can use light and CO 2 to produce sucrose, making it a promising candidate for use in co-cultures with heterotrophic workhorses. However, this process is challenged by the mutual stresses generated from the multispecies microbial culture. Here we demonstrate an ecosystem where S. elongatus is freely grown in a photo-bioreactor (PBR) containing an engineered heterotrophic workhorse (either β-carotene-producing Yarrowia lipolytica or indigoidine-producing Pseudomonas putida ) encapsulated in calcium-alginate hydrogel beads. The encapsulation prevents growth interference, allowing the cyanobacterial culture to produce high sucrose concentrations enabling the production of indigoidine and β-carotene in the heterotroph. Our experimental PBRs yielded an indigoidine titer of 7.5 g/L hydrogel and a β-carotene titer of 1.3 g/L hydrogel, amounts 15–22-fold higher than in a comparable co-culture without encapsulation. Moreover, 13 C-metabolite analysis and protein overexpression tests indicated that the hydrogel beads provided a favorable microenvironment where the cell metabolism inside the hydrogel was comparable to that in a free culture. Finally, the heterotroph-containing hydrogels were easily harvested and dissolved by EDTA for product recovery, while the cyanobacterial culture itself could be reused for the next batch of immobilized heterotrophs. This co-cultivation and hydrogel encapsulation system is a successful demonstration of bioprocess optimization under photobioreactor conditions.

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2021

Effects of spatial resolution on WRF v3.8.1 simulated meteorology over the central Himalaya

The sensitive ecosystem of the central Himalayan (CH) region, which is experiencing enhanced stress from anthropogenic forcing, requires adequate atmospheric observations and an improved representation of the Himalaya in the models. However, the accuracy of atmospheric models remains limited in this region due to highly complex mountainous topography. This article delineates the effects of spatial resolution on the modeled meteorology and dynamics over the CH by utilizing the Weather Research and Forecasting (WRF) model extensively evaluated against the Ganges Valley Aerosol Experiment (GVAX) observations during the summer monsoon. The WRF simulation is performed over a domain (d01) encompassing northern India at 15 km x 15 km resolution and two nests (d02 at 5 km x 5 km and d03 at 1 km x 1 km) centered over the CH, with boundary conditions from the respective parent domains. WRF simulations reveal higher variability in meteorology, e.g., relative humidity (RH = 70.3%-96.1%) and wind speed (WS = 1.1-4.2m s(-1)), compared to the ERA-Interim reanalysis (RH D 80.0%-85.0%, WS D 1.2-2.3m s(-1)) over northern India owing to the higher resolution. WRF-simulated temporal evolution of meteorological variables is found to agree with balloon-borne measurements, with stronger correlations aloft (r = 0.44-0.92) than those in the lower troposphere (r = 0.18-0.48). The model overestimates temperature (warm bias by 2.8 degrees C) and underestimates RH (dry bias by 6.4 %) at the surface in d01. Model results show a significant improvement in d03 (P = 827.6 hPa, T = 19.8 degrees C, RH = 92.3 %), closer to the GVAX observations (P = 801.4 hPa, T = 19.5 degrees C, RH = 94.7 %). Interpolating the output from the coarser domains (d01, d02) to the altitude of the station reduces the biases in pressure and temperature; however, it suppresses the diurnal variations, highlighting the importance of well-resolved terrain (d03). Temporal variations in near-surface P, T, and RH are also reproduced by WRF in d03 to an extent (r>0:5). A sensitivity simulation incorporating the feedback from the nested domain demonstrates the improvement in simulated P, T, and RH over the CH. Our study shows that the WRF model setup at finer spatial resolution can significantly reduce the biases in simulated meteorology, and such an improved representation of the CH can be adopted through domain feedback into regional-scale simulations. Interestingly, WRF simulates a dominant easterly wind component at 1 km x 1 km resolution (d03), which is missing in the coarse simulations; however, the frequency of southeasterlies remains underestimated. The model simulation implementing a highresolution (3 s) topography input (SRTM) improved the prediction of wind directions; nevertheless, further improvements are required to better reproduce the observed local-scale dynamics over the CH.

Singh, Jaydeep↗

NASA NTRS1986

Spatial characterization of acid rain stress in Canadian Shield lakes

A major concern of the acid rain problem is the cumulative ecosystem damage to lakes and forests. The number of lakes affected in northeastern United States and on the Canadian Shield is thought to be enormous. Seasonal changes in lake transparency are examined relative to annual acidic load. The relationship between variations in lake acidification and ecophysical units is being examined. Finally, the utility of Thematic Mapper (TM) based observations is being used to measure seasonal changes in the optical transparency in acid lakes.

Tanis, Fred J.↗

DOE OSTI2025

From subsidies to stressors: Positively skewed ecological gradients alter biological responses to nutrients in streams

Abstract Subsidy–stress gradients offer a useful framework for understanding ecological responses to perturbation and may help inform ecological metrics in highly modified systems. Historic, region‐wide shifts from bottomland hardwood forest to row crop agriculture can cause positively skewed impact gradients in alluvial plain ecoregions, resulting in tolerant organisms that typically exhibit a subsidy response (increased abundance in response to environmental stressors) shifting to a stress response (declining abundance at higher concentrations). As a result, observed biological tolerance in modified ecosystems may differ from less modified regions, creating significant challenges for detecting biological responses to restoration efforts. Using the agriculturally dominated Mississippi Alluvial Plain (MAP) ecoregion in Mississippi, USA, as a case study, we tested the hypothesis that macroinvertebrate taxa that typically display a subsidy response to nutrient enrichment in less modified ecoregions (i.e., nutrient‐tolerance) shift to a stress response to increasing nutrients in highly modified watersheds with elevated baseline nutrient conditions (i.e., nutrient intolerance). The abundance and diversity of MAP‐specific intolerant taxa identified with threshold indicator taxa analysis were either unresponsive or exhibited a subsidy response to increasing nutrients in less modified ecoregions in Mississippi with less land alteration and lower nutrient concentrations, but declined at higher concentrations, providing evidence for a stress response to elevated nutrients in the MAP. Additionally, MAP‐specific tolerant and intolerant taxa richness responded to increased nutrients predictably and consistently across space and time within the MAP. However, in MAP streams, elevated specific conductance was predicted to dampen the response of tolerant and intolerant taxa richness to increasing nutrient concentrations, highlighting the importance of considering multistressor interactions when interpreting biological data. Lastly, we demonstrate the efficacy of this approach with sediment bacterial communities characterized with amplicon sequencing, which lack sufficient life history characteristics necessary for the development of multimetric indices. Both macroinvertebrate and bacterial communities responded similarly to increasing nutrient concentrations, suggesting DNA‐based approaches may provide an efficient biological assessment tool for monitoring water quality improvements in highly modified watersheds.

DeVilbiss, Stephen E. [U.S. Geological Survey Lowe↗

DOE OSTI2020

Assessing impacts of selective logging on water, energy, and carbon budgets and ecosystem dynamics in Amazon forests using the Functionally Assembled Terrestrial Ecosystem Simulator

Abstract. Tropical forest degradation from logging, fire, and fragmentation not only alters carbon stocks and carbon fluxes, but also impacts physical land surface properties such as albedo and roughness length. Such impacts are poorly quantified to date due to difficulties in accessing and maintaining observational infrastructures, as well as the lack of proper modeling tools for capturing the interactions among biophysical properties, ecosystem demography, canopy structure, and biogeochemical cycling in tropical forests. As a first step to address these limitations, we implemented a selective logging module into the Functionally Assembled Terrestrial Ecosystem Simulator (FATES) by mimicking the ecological, biophysical, and biogeochemical processes following a logging event. The model can specify the timing and aerial extent of logging events, splitting the logged forest patch into disturbed and intact patches; determine the survivorship of cohorts in the disturbed patch; and modifying the biomass and necromass (total mass of coarse woody debris and litter) pools following logging. We parameterized the logging module to reproduce a selective logging experiment at the Tapajós National Forest in Brazil and benchmarked model outputs against available field measurements. Our results suggest that the model permits the coexistence of early and late successional functional types and realistically characterizes the seasonality of water and carbon fluxes and stocks, the forest structure and composition, and the ecosystem succession following disturbance. However, the current version of FATES overestimates water stress in the dry season and therefore fails to capture seasonal variation in latent and sensible heat fluxes. Moreover, we observed a bias towards low stem density and leaf area when compared to observations, suggesting that improvements are needed in both carbon allocation and establishment of trees. The effects of logging were assessed by different logging scenarios to represent reduced impact and conventional logging practices, both with high and low logging intensities. The model simulations suggest that in comparison to old-growth forests the logged forests rapidly recover water and energy fluxes in 1 to 3 years. In contrast, the recovery times for carbon stocks, forest structure, and composition are more than 30 years depending on logging practices and intensity. This study lays the foundation to simulate land use change and forest degradation in FATES, which will be an effective tool to directly represent forest management practices and regeneration in the context of Earth system models.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2021

Understanding Multilevel Selection May Facilitate Management of Arbuscular Mycorrhizae in Sustainable Agroecosystems

Studies in natural ecosystems show that adaptation of arbuscular mycorrhizal (AM) fungi and other microbial plant symbionts to local environmental conditions can help ameliorate stress and optimize plant fitness. This local adaptation arises from the process of multilevel selection, which is the simultaneous selection of a hierarchy of groups. Studies of multilevel selection in natural ecosystems may inform the creation of sustainable agroecosystems through developing strategies to effectively manage crop microbiomes including AM symbioses. Field experiments show that the species composition of AM fungal communities varies across environmental gradients, and that the biomass of AM fungi and their benefits for plants generally diminish when fertilization and irrigation eliminate nutrient and water limitations. Furthermore, pathogen protection by mycorrhizas is only important in environments prone to plant damage due to pathogens. Consequently, certain agricultural practices may inadvertently select for less beneficial root symbioses because the conventional agricultural practices of fertilization, irrigation, and use of pesticides can make these symbioses superfluous for optimizing crop performance. The purpose of this paper is to examine how multilevel selection influences the flow of matter, energy, and genetic information through mycorrhizal microbiomes in natural and agricultural ecosystems, and propose testable hypotheses about how mycorrhizae may be actively managed to increase agricultural sustainability.

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2021

Scaling plant responses to high temperature from cell to ecosystem

Plant survival and productivity decrease with exposure to less favourable environments. The negative effects of environmental factors such as water-deficit and salinity stress on vegetation are relatively well studied, primarily due to the large losses in crop yield and forest biomass caused by these stresses. Although the impact of combined heat and drought on plants has received considerable interest in recent years due to climate change, there has been less focus on ascertaining the impact of heat stress alone at a range of temporal and spatial scales. The steady increase in global mean temperatures and (more importantly) variability in extreme temperatures is translating into more frequent and extreme heat stress episodes, which in turn reduce plant productivity. Further, projected increases in both day and night temperatures and the predicted impact of these changes on agricultural and forest productivity have drawn attention to the need to better address the direct effects of heat on plants. In particular, there has been tremendous interest in understanding the short- and long-term effects of heat at the cellular and whole-plant levels, including work on crops of agricultural importance and species from less managed ecosystems. Hence, we made a concerted effort in this Special Issue to capture recent progress in our ability to quantify the impact of heat stress, and identify new tools and approaches that have been developed and implemented to capture a wide range of responses in plants. The series of reviews and research articles presented here captures our current understanding of plant physiological and molecular responses to heat stress, as well as covering phenotyping methods, genetic diversity and potential routes through which plants can acclimate and adapt to warming climates.

54 ENVIRONMENTAL SCIENCES↗