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At least 127 records · Page 7

Automated Detection of Spurious Signals in VLBI Phase Calibration Data

In this memorandum, a set of processing strategies for automatic masking of phase calibration tones is outlined as implemented in the software package PIMA in the task Generate Phase Calibration Mask, or GEPM. The task relies on a robust procedure of cleaning phase calibration data before employing several mathematical strategies designed to selectively identify spurious signals from phase calibration tones. These strategies were derived as more rigorous implementations of heuristics traditionally used by analysts in manually identifying problematic phase calibration data. The task is intended to automate the process of generating a phase calibration mask and in so doing increase the speed and regularity of VLBI analysis. At the outset of the project, a series of goals were identified to evaluate the success of this mask generation. This included the development of an algorithm to identify and mask short-term (defined as less than 10 seconds in length) spurious signals affecting phase calibration data, the development of an algorithm to identify and mask phase calibration tones affected by constant radio-frequency interference, the implementation of a detection scheme for identifying large jumps in phase calibration phase caused by clock breaks, and finally a method of reporting phase calibration health metrics to the user. Processing of over 10 experiments has demonstrated that the final form of the task GEPM as detailed in this technical memorandum satisfies each of these conditions and satisfactorily performs the task of automatic phase calibration data masking, although the wide variety in quality and characteristics of phase calibration data makes a single solution to the problem quite difficult. A series of user inputs have therefore been defined to assist analysts in tailoring automatic masking to specific stations and phase calibration generators. The vast majority of applicable code was written in FORTRAN to increase execution speed and ease of interfacing with the existing code base in PIMA, but a wrapper function in Python was also written to allow for a simpler method of interacting with GEPM and inputting relevant parameters. In addition to this report, thorough documentation was added to the already existing repositories associated with PIMA as a whole.

Geodesy↗

Observable properties of neutron stars

This paper reviews the information on neutron stars that has been obtained from observations of pulsars and pulsing X-ray stars, with emphasis on results from timing studies. Included are summaries of the most recent theoretical work on neutron star structure and the current evidence concerning neutron star masses and radii. Also included are discussions of large frequency jumps and small-scale timing irregularities, the description of the latter phenomenon in terms of random noise processes, and the use of both as probes of the internal structure and dynamical properties of neutron stars. Finally, some of the most promising directions for future work are briefly noted.

Lamb, F. K.↗

Probing the interiors of neutron stars

This paper reviews the information on neutron stars that has been obtained from observations of pulsars and pulsing X-ray stars, with emphasis on results from timing studies. Included are summaries of the most recent theoretical work on neutron star structure and the current evidence concerning neutron star masses and radii. Also included are discussions of large frequency jumps and small-scale timing irregularities, the description of the latter phenomenon in terms of random noise processes, and the use of both as probes of the internal structure and dynamical properties of neutron stars. Finally, some of the most promising directions for future work are briefly noted.

Lamb, F. K.↗

Temperature-jump solution X-ray scattering reveals distinct motions in a dynamic enzyme

Correlated motions of proteins are critical to function, but these features are difficult to resolve using traditional structure determination techniques. Time-resolved X-ray methods hold promise for addressing this challenge, but have relied on the exploitation of exotic protein photoactivity, and are therefore not generalizable. Temperature jumps, through thermal excitation of the solvent, have been utilized to study protein dynamics using spectroscopic techniques, but their implementation in X-ray scattering experiments has been limited. Here, we perform temperature-jump small- and wide-angle X-ray scattering measurements on a dynamic enzyme, cyclophilin A, demonstrating that these experiments are able to capture functional intramolecular protein dynamics on the microsecond timescale. We show that cyclophilin A displays rich dynamics following a temperature jump, and use the resulting time-resolved signal to assess the kinetics of conformational changes. Furthermore, two relaxation processes are resolved: a fast process is related to surface loop motions, and a slower process is related to motions in the core of the protein that are critical for catalytic turnover.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Efficient detection and signal parameter estimation with applications to high dynamic GPS receivers

A novel technique for simultaneously detecting data and estimating the parameters of a received carrier signal phase modulated by unknown data and experiencing very high Doppler, Doppler rate, etc. is discussed. Such a situation arises, for example, in the case of Global Positioning Systems (DPS) where the signal parameters are directly related to the position, velocity and acceleration of the GPS receiver. The proposed scheme is based upon first estimating the received signal local (data dependent) parameters over two consecutive bit periods, followed by the detection of a possible jump in these parameters. The presence of a detected jump signifies a data transition which is then removed from the received signal. This effectively demodulated signal is then processed to provide the estimates of global (data independent) parameters of the signal related to the position, velocity, etc. of the receiver. One of the key features of the proposed algorithm is the introduction of two different schemes which can provide an improvement of up to 3 dB over the conventional implementation of Kalman filter as applied to phase and frequency estimation, under low to medium signal-to-noise ratio conditions.

Kumar, R.↗

Magnetospheric response to solar wind dynamic pressure variations: Interaction of interplanetary tangential discontinuities with the bow shock

Some magnetic impulse events observed in the polar region are related to vortices associated with plasma convection in the ionosphere. Recent analyses of satellite and ground data suggest that the interaction of solar wind dynamic pressure pulses and the magnetosphere may lead to the formation of velocity vortices in the magnetopause boundary layer region. This can in turn lead to the presence of vortices in the polar ionosphere. However, before reaching the Earth's magnetopause, these interplanetary pressure pulses must interact with and pass through the bow shock. A variation of the solar wind dynamic pressure may be associated with shocks, magnetic holes, or tangential discontinuities (TDs) in the interplanetary medium. We study the interaction of interplanetary TDs with the Earth's bow shock (BS) using both theoretical analysis and MHD computer simulations. It is found that as a result of the collision between a TD and the BS, the jump in the solar wind dynamic pressure associated with the TD is significantly modified, the bow shock moves, and a new fast shock or fast rarefaction wave, which propagates in the downstream direction, is excited. Our theoretical analysis shows that the change in the plasma density across the interplanetary TD plays the most important role in the collision process. In the case with an enhanced dynamic pressure behind the interplanetary TD, the bow shock is intensified in strength and moves in the earthward direction. The dynamic pressure jump associated with the transmitted TD is generally reduced from the value before the interaction. A fast compressional shock is excited ahead of the transmitted TD and propagates toward the Earth's magnetosphere. For the case in which the dynamic pressure is reduced behind the interplanetary TD, the pressure jump across the transmitted TD is substantially weakened, the bow shock moves in the sunward direction, and a rarefaction wave which propagates downstream is excited. We also simulate and discuss the interaction of a pair of tangential discontinuities, which may correspond to a magnetic hole, with the BS.

Wu, Bor-Han↗

Influence of Vegetation Canopy Architecture on Dynamics of Spatiotemporal Light Distribution and its Effect on Land-Biosphere-Atmosphere Fluxes of Energy, Carbon, and Water

The dynamic spatiotemporal distribution of light and micro climatic variables (wind speed, atmospheric CO 2 concentration, humidity, pressure, and air temperature) within the plant canopy as determined by the canopy architecture play a critical role in land-biosphere-atmosphere (LBA) photosynthetic carbon uptake, transpiratory water loss and energy partitioning. Vegetation models that include effects of sun and shade flecks, leaf temperature and energy balance partitioning between sensible and latent heat fluxes, and reduced turbulent mixing in dense vegetation canopies can accurately predict canopy performance, particularly its shaded leaves, which can constitute 80% of leaf area and contribute up to 50% of carbon update and 65% of water loss. However, current vegetation models with their bulk characterization of shaded leaves poorly represent the complex three dimensional (3D) canopy architecture are insufficient to capture the spatiotemporal dynamics of shaded leaves. Here, we propose to employ an x-ray computed tomography (XCT) imaging technique in combination with an automated, high throughput, image processing pipeline (3DArch, to be developed) to obtain an explicit 3D triangulated surface mesh of a plant canopy (Fig 1). 3DArch would provide a much needed technological jump in 3D LBA modeling where computer generated artificial 3D models suffer from lack of high resolution detailed canopy architecture parameters. The 3D canopy surface mesh output from 3DArch is coupled with an explicit 3D forward ray tracing model (fastTracer) to obtain a high resolution representation of the dynamic spatiotemporal light environment within the canopy over the course of a day (Fig 1). The results from the light attenuation model are then coupled with a process based multi-scale bio-physical canopy and leaf model of photosynthesis (PlantGro) to get fluxes of carbon, water and energy at the leaf and canopy scale, in addition to estimating whole plant carbon uptake, and water loss. Our proposed model framework would be the first of its kind to provide a breakthrough capability in the field of process-based plant modeling that bridges the key technological gap in shaded leaf modeling through explicit representation of 3D canopy architecture. Computer generated artificial 3D model canopy simulations on grasses show that the canopy light distribution does not follow an exponential behavior as assumed in most 1D vegetation models, but rather exhibits a heterogeneous behavior, with a small but significant portion of interior canopy leaves experiencing peak light levels due to sun flecks while the rest of the canopy receives substantially lower light levels. These results indicate a bias in traditional models that overestimates shaded leaf contribution towards whole canopy photosynthesis by up to 15% and underestimate transpiration by up to 12% with an associated increase in sensible heat fluxes since photosynthesis, transpiration and energy partitioning are tightly coupled processes. However, these test results need to be validated using the 3D architecture obtained from a real plant imaged in 3D using 3DArch, rather than an artificial model plant. Our proposed model framework would allow us to identify inefficiencies in canopy light distribution and prescribe optimal canopy architectures (leaf optical properties, leaf area, leaf angles, row spacing, planting density, etc.) to traditional and genetic engineering based crop breeders, for maximizing target functions such as light use efficiency, water use efficiency, drought tolerance, crop yield, crop resilience etc., with important applications in biofuel crops such as sorghum, and switchgrass. Our model can also be applied for designing optimal canopy architecture that increase surface albedo as a mitigation strategy for global warming and projections of crop yield for future food and water security under climate change.

59 BASIC BIOLOGICAL SCIENCES↗

Memoryless self-reinforcing directionality in endosomal active transport within living cells

In contrast to Brownian transport, the active motility of microbes, cells, animals and even humans often follows another random process known as truncated Levy walk 1,2 . These stochastic motions are characterized by clustered small steps and intermittent longer jumps that often extend towards the size of the entire system. As there are repeated suggestions, although disagreement, that Levy walks have functional advantages over Brownian motion in random searching and transport kinetics 3-8 , their intentional engineering into active materials could be useful. Here, we show experimentally in the classic active matter system of intracellular trafficking 9-15 that Brownian-like steps self-organize into truncated Levy walks through an apparent time-independent positive feedback such that directional persistence increases with the distance traveled persistently. A molecular model that allows the maximum output of the active propelling forces to fluctuate slowly fits the experiments quantitatively. Furthermore, our findings offer design principles for programming efficient transport in active materials.

36 MATERIALS SCIENCE↗

Simulation of period doubling of recurrent solar wind structures

Based on satellite observations of a recurrent solar wind structure conducted in 1974, an MHD simulation model, and input functions generated from plasma and magnetic field data, the continuing evolution of the solar wind structure outside 5 AU is studied. The model uses the Rankine-Hugoniot relations to describe the jumps in flow properties across the shocks, and it treats shocks as surfaces of discontinuity with zero thickness. Two interaction processes (the collision and the merging of shocks) play important roles in restructuring the solar wind in the outer heliosphere. The simulation result shows that period doubling occurs between 5 and 10 AU. The recurrent solar wind appears to be a persistent new structure between 10 and 20 AU, and it consists of one merged interaction region per solar rotation.

Whang, Y. C.↗

Molecules from Space and the Origin of Life

There is a growing concensus among space scientists that frozen molecules from space helped to make the Earth the pleasant place that it is today, and helped Life start on Earth, and perhaps elsewhere. The chain of logic that led scientists to posit a connection between extraterrestrial molecules and the origin of life is as follows. 1) The rapidity with which life arose demands that conditions on Earth were conducive to the formation of life very early on. 2) There is reason to believe that comets and meteorites fell oil the Earth from its inception. 3) We now know that comets and meteorites are replete with complex organic compounds, some of which resemble those in living systems. 4) Perhaps the input of molecules from comets and meteorites provided crucial constituents to the primordial soup and Jump started life on Earth. 5) These molecules formed out in deep space long before the Earth ever existed, by processes that we can reproduce in the laboratory. 6) The fact that organic molecules are seen by astronomers throughout our galaxy and in others makes it seem likely that they were (and are) available to help start life in other planetary systems.

Bernstein Max P.↗

Near Surface Nucleation and Particle Mediated Growth of Colloidal Au Nanocrystals

During non-classical growth of nanostructures via assembly of primary nuclei, nucleation and assembly are assumed to be distinct processes: nanoparticles nucleate randomly and aggregate to form extended structures through Brownian motion in the presence of long-range attractive interactions. Here we investigate the relationship between these two processes by using in situ AFM, in situ, ex situ and cryo TEM and UV-Vis spectroscopy to observe growth of colloidal gold and simulations to develop a mechanistic model of the process. Our results reveal an inexorable link between nucleation and assembly with nuclei forming almost exclusively within a ~ 1 nm interfacial region of existing particles. The new particles immediately close the gap either through a diffusive jump or via growth of a neck between the seed and new particle, generating aggregates exhibiting features commonly attributed to oriented attachment of independently nucleated particles. The results demonstrate that creation of initial particle interfaces leads to local environments that redirect growth towards non-classical processes.

Cheng, Yingwen↗

Determining the Molecular Growth Mechanisms of Protein Crystal faces by Atomic Force Microscopy

A high resolution atomic force microscopy (AFM) study had shown that the molecular packing on the tetragonal lysozyme (110) face corresponded to only one of two possible packing arrangements, suggesting that growth layers on this face were of bimolecular height (Li et al., 1998). Theoretical analyses of the packing had also indicated that growth of this face should proceed by the addition of growth units of at least tetramer size corresponding to the 43 helices in the crystal. In this study an AFM linescan technique was devised to measure the dimensions of individual growth units on protein crystal faces. The growth process of tetragonal lysozyme crystals was slowed down by employing very low supersaturations. As a result images of individual growth events on the (110) face were observed, shown by jump discontinuities in the growth step in the linescan images. The growth unit dimension in the scanned direction was obtained by suitably averaging these images. A large number of scans in two directions on the (110) face were performed and the distribution of lysozyme aggregate sizes were obtained. A variety of growth units, all of which were 43 helical lysozyme aggregates, were shown to participate in the growth process with a 43 tetramer being the minimum observed size. This technique represents a new application for AFM allowing time resolved studies of molecular process to be carried out.

Li, Huayu↗

Detecting single gravitons with quantum sensing

The quantization of gravity is widely believed to result in gravitons – particles of discrete energy that form gravitational waves. But their detection has so far been considered impossible. Here we show that signatures of single graviton exchange can be observed in laboratory experiments. We show that stimulated and spontaneous single-graviton processes can become relevant for massive quantum acoustic resonators and that stimulated absorption can be resolved through continuous sensing of quantum jumps. We analyze the feasibility of observing the exchange of single energy quanta between matter and gravitational waves. Our results show that single graviton signatures are within reach of experiments. In analogy to the discovery of the photo-electric effect for photons, such signatures can provide the first experimental clue of the quantization of gravity.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Mitigating Transition in the Fermilab Booster Using a Triple Phase Jump

The PIP-II project will significantly enhance neutrino production for DUNE, Fermilab’s flagship long-baseline neutrino oscillation experiment, by doubling the beam power delivered by the accelerator complex. To achieve this, the total charge injected from the new PIP-II linac into the Booster rapid cycling synchrotron (RCS) will increase from $4.5\times 10^{12}$ to $6.5\times 10^{12}$ protons per pulse. Simultaneously, the Booster’s ramp rate will rise from 15 to 20 Hz, while the injection energy will go from 400 MeV to 800 MeV. The Booster accelerates the beam to 8 GeV and crosses transition at $\gamma_t=5.45$. In current operations, no dedicated $\gamma_t$ jump system is employed; instead, longitudinal emittance growth is controlled via an active quadrupole-mode feedback system. Downstream, the Recycler Ring uses slip-stacking to accumulate beam and increase bunch intensity. However, this process imposes a constraint on the longitudinal emittance at Booster extraction, limiting it to 0.1 eV-s (95\%) to avoid excessive particle loss. Because collective effects scale with intensity, additional measures to mitigate transition crossing may be required to stay below this limit. One potential approach is the so-called triple phase-jump technique. While the method has known limitations, it offers some advantages: it can be implemented using the existing digital low-level RF (LLRF) system, requires no additional magnets or pulsed power supplies, and remains compatible with quadrupole-mode feedback.

Ostiguy, J.-F. [Fermilab] (ORCID:0000000290883681)↗

Mitigating Transition in the Fermilab Booster Using a Triple Phase Jump

The PIP-II project will significantly enhance neutrino production for DUNE, Fermilab s flagship long-baseline neutrino oscillation experiment, by doubling the beam power delivered by the accelerator complex. To achieve this, the total charge injected from the new PIP-II linac into the Booster rapid cycling synchrotron (RCS) will increase from $4.5\times 10^{12}$ to $6.5\times 10^{12}$ protons per pulse. Simultaneously, the Booster s ramp rate will rise from 15 to 20 Hz, while the injection energy will go from 400 MeV to 800 MeV. The Booster accelerates the beam to 8 GeV and crosses transition at $\gamma_t=5.45$. In current operations, no dedicated $\gamma_t$ jump system is employed; instead, longitudinal emittance growth is controlled via an active quadrupole-mode feedback system. Downstream, the Recycler Ring uses slip-stacking to accumulate beam and increase bunch intensity. However, this process imposes a constraint on the longitudinal emittance at Booster extraction, limiting it to 0.1 eV-s (95\%) to avoid excessive particle loss. Because collective effects scale with intensity, additional measures to mitigate transition crossing may be required to stay below this limit. One potential approach is the so-called triple phase-jump technique. While the method has known limitations, it offers some advantages: it can be implemented using the existing digital low-level RF (LLRF) system, requires no additional magnets or pulsed power supplies, and remains compatible with quadrupole-mode feedback.

Ostiguy, Jean-Francois [Fermilab] (ORCID:000000029↗

M DWARF FLARE CONTINUUM VARIATIONS ON ONE-SECOND TIMESCALES: CALIBRATING AND MODELING OF ULTRACAM FLARE COLOR INDICES

We present a large data set of high-cadence dMe flare light curves obtained with custom continuum filters on the triple-beam, high-speed camera system ULTRACAM. The measurements provide constraints for models of the near-ultraviolet (NUV) and optical continuum spectral evolution on timescales of ≈1 s. We provide a robust interpretation of the flare emission in the ULTRACAM filters using simultaneously obtained low-resolution spectra during two moderate-sized flares in the dM4.5e star YZ CMi. By avoiding the spectral complexity within the broadband Johnson filters, the ULTRACAM filters are shown to characterize bona fide continuum emission in the NUV, blue, and red wavelength regimes. The NUV/blue flux ratio in flares is equivalent to a Balmer jump ratio, and the blue/red flux ratio provides an estimate for the color temperature of the optical continuum emission. We present a new “color–color” relationship for these continuum flux ratios at the peaks of the flares. Using the RADYN and RH codes, we interpret the ULTRACAM filter emission using the dominant emission processes from a radiative-hydrodynamic flare model with a high nonthermal electron beam flux, which explains a hot, T ≈ 10{sup 4} K, color temperature at blue-to-red optical wavelengths and a small Balmer jump ratio as observed in moderate-sized and large flares alike. We also discuss the high time resolution, high signal-to-noise continuum color variations observed in YZ CMi during a giant flare, which increased the NUV flux from this star by over a factor of 100.

79 ASTRONOMY AND ASTROPHYSICS↗

Extended behavioral decomposition for estimating ultrahigh reliability

Limitations of some analytic techniques in approximating the reliability of life-critical electronic systems are discussed, and a framework for the specification of recovery and fault-handling submodels is suggested. The framework makes full use of the instantaneous jump theorem by viewing the collection of interfering, premature exits from any fault handling and recovery submodel as defining a new, competing process submodel. This approach allows a greater flexibility in submodel representation, since submodels may contain arbitrary entrance arcs, exit arcs, and competing, interfering transitions with arbitrary destinations. Since the effects of near-coincident faults need not be represented as system failure events, the reliability estimates produced need not be unduly conservative. Comparisons on small models, where exact results can be computed, show substantial improvement in accuracy over earlier techniques. Implementation of the technique in an X-windows-based system, XHARP, is described.

Geist, Robert↗

Statistical features of magnetic noise in mixed-type impact fracture

We study the statistical features of magnetic noise accompanying the dynamic fracture of steel samples during mixed type fracture, where the overall ductile character of crack propagation is interrupted by a sudden brittle jump. The structure of the voltage time series is investigated by identifying discrete peaks which correspond to elementary steps of the jerky cracking process. We show that the height, duration, area, and energy of peaks have power law distributions with exponents falling close to the corresponding values of pure ductile fracture. For single peaks, a power law correlation of the height and area with the width is evidenced; however, the mixed nature of fracture gives rise to a crossover between two regimes of different exponents. The average pulse shape of micro-cracking events has a parabolic form with a right handed asymmetry similarly to quasi-static fracture propagation. The asymmetry emerges due to stress localization at the advancing crack front.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗