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At least 127 records · Page 7

Biotic Interactions Are More Important than Propagule Pressure in Microbial Community Invasions

ABSTRACT Microbial probiotics are intended to improve functions in diverse ecosystems, yet probiotics often fail to establish in a preexisting microbiome. This is a species invasion problem. The relative importance of the two major factors controlling establishment in this context—propagule pressure (inoculation dose and frequency) and biotic interactions (composition of introduced and resident communities)—is unknown. We tested the effect of these factors in driving microbial composition and functioning following 12 microbial community invasions (e.g., introductions of many microbial invaders) in microcosms. Ecosystem functioning over a 30-day postinvasion period was assessed by measuring activity (respiration) and environment modification (dissolved organic carbon abundance). To test the dependence on environmental context, experiments were performed in two resource environments. In both environments, biotic interactions were more important than propagule pressure in driving microbial composition and community function, but the magnitude of effect varied by environment. Successful invaders comprised approximately 8% of the total number of operational taxonomic units (OTUs). Bacteria were better invaders than fungi, with average relative abundances of 7.4% ± 6.8% and 1.5% ± 1.4% of OTUs, respectively. Common bacterial invaders were associated with stress response traits. The most resilient bacterial and fungal families, in other words, those least impacted by invasions, were linked to antimicrobial resistance or production traits. Illuminating the principles that determine community composition and functioning following microbial invasions is key to efficient community engineering. IMPORTANCE With increasing frequency, humans are introducing new microbes into preexisting microbiomes to alter functioning. Example applications include modification of microflora in human guts for better health and those of soil for food security and/or climate management. Probiotic applications are often approached as trial-and-error endeavors and have mixed outcomes. We propose that increased success in microbiome engineering may be achieved with a better understanding of microbial invasions. We conducted a microbial community invasion experiment to test the relative importance of propagule pressure and biotic interactions in driving microbial community composition and ecosystem functioning in microcosms. We found that biotic interactions were more important than propagule pressure in determining the impact of microbial invasions. Furthermore, the principles for community engineering vary among organismal groups (bacteria versus fungi).

59 BASIC BIOLOGICAL SCIENCES↗

Multidecadal shifts in forest plant diversity and community composition across glacial landforms in northern lower Michigan, USA

Understanding how plant community assemblage is affected by spatial and temporal patterns is crucial to understanding forest ecosystem responses to disturbance, including future climate change. In this article, we tracked how diversity and composition are distributed through space and time in a midsuccessional mixed hardwood forest in northern lower Michigan, United States. This region’s geographically and abiotically distinct glacial landforms influence both the spatial and temporal dynamics of its forest communities. Vegetation sampling plots (n = 87) were established at the University of Michigan Biological Station in 1990 and resampled in 2015. Vegetation in the overstory, sapling, and groundcover layers was censused. Abiotic variables, including elevation, pH, and soil nutrients, were measured in a subset of plots (n = 40). There were strong differences in diversity and community composition among glacial landforms, with the moraine having a 31% greater species richness in the groundcover layer compared with those of the other glacial landforms. Surprisingly, plant communities across all three vegetation layers showed little change over the 25-year period, and we found no evidence of differences in successional rates among glacial landforms. Our findings indicate that glacial landforms have a large influence on the production and maintenance of local plant diversity and community composition in this area and suggest that successional dynamics may manifest themselves over much longer time periods in these northern biomes.

Forestry↗

A survey of numerical linear algebra methods utilizing mixed-precision arithmetic

The efficient utilization of mixed-precision numerical linear algebra algorithms can offer attractive acceleration to scientific computing applications. Especially with the hardware integration of low-precision special-function units designed for machine learning applications, the traditional numerical algorithms community urgently needs to reconsider the floating point formats used in the distinct operations to efficiently leverage the available compute power. In this study, we provide a comprehensive survey of mixed-precision numerical linear algebra routines, including the underlying concepts, theoretical background, and experimental results for both dense and sparse linear algebra problems.

97 MATHEMATICS AND COMPUTING↗

Characterization of Multiple Trichloroethene, cis-Dichloroethene and 1,1-Dichloroethene Degrading Propanotrophic Communities

Aerobic cometabolism offers a viable strategy for the remediation of chlorinated solvent plumes at oxic sites where anaerobic approaches are limited. In this study, propane-enriched mixed cultures (derived from agricultural soils and an impacted site sediment) which previously degraded 1,4-dioxane, were evaluated for their capacity to also degrade trichloroethene (TCE), cis-1,2-dichloroethene (cDCE), and 1,1-dichloroethene (1,1-DCE) over successive transfers. Sustained biodegradation of TCE and cDCE was observed across multiple enrichments, and cultures enriched on one compound generally degraded the other. In contrast, 1,1-DCE biodegradation was restricted to a subset of cultures and removal times increased over transfers. Further, 1,1-DCE removal was absent at elevated concentrations, both trends consistent with inhibitory or toxic effects. Whole genome sequencing analyses revealed pronounced substrate-dependent selection of microbial communities, with cDCE-degrading cultures being dominated by Mycobacterium and Mycolicibacterium, whereas TCE-degrading cultures were dominated by Rhodococcus. Rhodococcus metagenome-assembled genomes (MAGs) in the TCE degrading cultures classified as R. opacus or R. wratislaviensis. 1,1-DCE degrading cultures were dominated by Pseudonocardia, although the associated MAGs contained a truncated propane monooxygenase alpha subunit. Functional gene analysis identified both group 5 (prmABCD) and putative group 6 propane monooxygenases. The following KBase narratives contain the quality controlled reads, MAGs (fasta assemblies) and the prokka annotations for each assembly TCE Site 1A and B Propanotrophic MAGs (https://narrative.kbase.us/narrative/254918) TCE Soil 2A and B Propanotrophic MAGs (https://narrative.kbase.us/narrative/254919) TCE Soil T3 A and B Propanotrophic MAGs (https://narrative.kbase.us/narrative/254920) TCE Soil T4 A and B Propanotrophic MAGs (https://narrative.kbase.us/narrative/254921) cDCE Site 1A 1B Propanotrophic MAGs (https://narrative.kbase.us/narrative/254915) cDCE Soils T2 A and B Propanotrophic MAGs (https://narrative.kbase.us/narrative/254927) cDCE Soil T3 A and B Propanotrophic MAGs (https://narrative.kbase.us/narrative/254928) cDCE Soil 4A and B Propanotrophic MAGs (https://narrative.kbase.us/narrative/254942) 1,1-DCE T2 T3 Propanotrophic MAGs (https://narrative.kbase.us/narrative/254903)

59 BASIC BIOLOGICAL SCIENCES↗

Electric light-duty vehicles have decarbonization potential but may not reduce other environmental problems

Electric vehicles are promoted as ‘clean’ technologies and offer promising reductions in transportation emissions. Nevertheless, their environmental benefits critically depend on the local electricity grid mix and the type of emission being considered. Here, we conduct a comparative life cycle assessment of the four dominant light-duty vehicle categories at both the global scale and in three representative countries: Norway, the US, and China. By analyzing different environmental indicators, particularly global warming potential and respiratory effects, and quantifying related parametric uncertainties, we reveal that the advantages of electric vehicles vary across these regions and across environmental impact types. While electric vehicles offer considerable decarbonization potential as the grid mix becomes cleaner, they might not mitigate other environmental impacts, such as increased respiratory effects on rural, low-income communities. Our results support stakeholders in identifying environmentally friendly vehicle and policy options while considering multiple factors, and emphasize the importance of tailored approaches over one-size-fits-all solutions in sustainable transportation.

33 ADVANCED PROPULSION SYSTEMS↗

A Hierarchy of Global Ocean Models Coupled to CESM1

Abstract We develop a hierarchy of simplified ocean models for coupled ocean, atmosphere, and sea ice climate simulations using the Community Earth System Model version 1 (CESM1). The hierarchy has four members: a slab ocean model, a mixed‐layer model (MLM) with entrainment and detrainment, an Ekman MLM, and an ocean general circulation model (OGCM). Flux corrections of heat and salt are applied to the simplified models ensuring that all hierarchy members have the same climatology. We diagnose the needed flux corrections from auxiliary simulations in which we restore the temperature and salinity to the daily climatology obtained from a target CESM1 simulation. The resulting three‐dimensional corrections contain the interannual variability fluxes that maintain the correct vertical gradients of temperature and salinity in the tropics. We find that the inclusion of mixed‐layer entrainment and Ekman flow produces sea surface temperature and surface air temperature fields whose means and variances are progressively more similar to those produced by the target CESM1 simulation. We illustrate the application of the hierarchy to the problem of understanding the response of the climate system to the loss of Arctic sea ice. We find that the shifts in the positions of the mid‐latitude westerly jet and of the Inter‐tropical Convergence Zone (ITCZ) in response to sea‐ice loss depend critically on upper ocean processes. Specifically, heat uptake associated with the mixed‐layer entrainment influences the shift in the westerly jet and ITCZ. Moreover, the shift of ITCZ is sensitive to the form of Ekman flow parameterization.

54 ENVIRONMENTAL SCIENCES↗

Sharp decline of dust events induces regional wetting over arid and semi-arid Northwest China in the NCAR Community atmosphere model

Abstract Multiple lines of observational evidence have indicated a significant wetting over the arid and semi-arid Northwest China (NWC) during recent decades, coinciding with a simultaneous sharp decline of dust events. Although recent studies have attributed NWC wetting to different anthropogenic and natural forcings, the mechanisms are not definitive and the regional wetting has been greatly underestimated in the Coupled Model Intercomparison Project historical simulations. Based on sensitivity experiments with different dust emission amounts using the NCAR Community Atmospheric Model version 5 (CAM5), here we find that decreasing dusts exert significant impacts on mixed-phase clouds through reducing the concentration of ice nucleating particles, increase the NWC precipitation and thus induce regional wetting through enhancing convection precipitation. A possible convection invigoration mechanism whereby the atmospheric vertical temperature gradient and convective instability are strengthened by reduced dusts, leading to convection invigoration and increased precipitation. These results are reinforced by simulations over the dust region in North Africa where mixed-phase and ice clouds are rare and reduced dusts do not increase precipitation. This study highlights the possible mechanism of dust-ice cloud interactions in recent NWC wetting and future regional climate change.

54 ENVIRONMENTAL SCIENCES↗

Planning for a Resilient Home Electricity Supply System

Resilience of power systems is already a key issue that is getting frequent attention all over the world. It is useful to analyze resilience issues not only for bulk supply, but at all levels including at a customer level. This is because distributed energy resources can play a prominent role in enhancing resilience. Although the literature on planning models, tools and data for bulk supply and distribution systems have expanded in recent years, customer-centric planning, e.g., for an individual household, is yet to receive adequate attention. Although solar PV and battery storage at a household level have been analyzed, how these resources can be optimally combined, together with grid supply, from a resilience perspective is the focus of this study. The study demonstrates how a conceptual framework can be developed to show the trade-off between system costs and resilience including its dimensions such as duration, depth and frequency of service outages. A planning model is developed that incorporates multiple facets of resilience and individual customer preferences. The model considers power system resilience explicitly as a constraint. The model is implemented for a household level case study in Miami, Florida. The results show there are complex trade-offs among different dimensions of resilience. The study demonstrates how combined resilience metrics can be formulated and evaluated using the proposed least-cost planning model at a household level to optimize grid supply together with solar, battery storage and diesel generators. The model allows a planner to directly embed a resilience standard to drive the optimal supply mix. These concepts and the modeling construct can also be applied at other levels of planning, including community level and bulk supply system planning.

24 POWER TRANSMISSION AND DISTRIBUTION↗

Multiscale Aerosol Modeling Across Space and Composition (Final Report)

The objective of this project was to harness the capabilities of our unique particle-resolved aerosol model PartMC as an integrating tool between models and measurements across scales. This particle-resolved model explicitly resolves aerosol aging processes that must be approximated in large-scale models, making it ideal for quantifying structural uncertainty and rigorously deriving simplified parameterizations (“coarse graining”) to be used in large-scale models. It also directly connects with laboratory and field measurements at both particle and bulk scales. The significant accomplishments of this project are as follows: 1. Advancing the state of the art in particle-resolved modeling; 2. Connecting modeling with ASR/ARM measurements; 3. Bridging from the process level to aerosol impacts on the global scale; 4. Community engagement through leading and participating in ASR program activities and publishing a review paper on aerosol mixing state that synthesizes experimental and modeling perspectives.

58 GEOSCIENCES↗

Los Alamos National Laboratory Hazardous Waste Facility Permit Community Relations Plan

The requirements of the Hazardous Waste Facility Permit are fulfilled through execution of LANL's fourth strategic goal: “Enabling mission delivery through next-generation facility, infrastructure, and operational excellence.” With input from our stakeholders, we will continue to fulfill those requirements and to improve our waste operations. In 2015, the Laboratory purpose statement focused waste management efforts by directing delivery of mission success through operational effectiveness and scientific excellence. This Plan advances that purpose through community involvement. In the process of achieving our national security mission, Los Alamos National Laboratory generates some hazardous and mixed waste. Hazardous waste is solid waste that is dangerous or potentially harmful to human health or the environment. Hazardous wastes can be liquids, solids, gases, or sludges. They can be discarded as commercial products, such as cleaning fluids or pesticides, or as the byproducts of operations. Specific substances are listed in 40 Code of Federal Regulations (CFR), Part 261: 40 CFR Part 261. Hazardous waste management activities are regulated by the U. S. Environmental Protection Agency and the New Mexico Environment Department (NMED) pursuant to New Mexico Hazardous Waste Act (HWA; Chapter 74, Article 4 NMSA 1978) and regulations under the Act. In 1989, NMED issued the Hazardous Waste Facility Permit (EPA ID Number NM0890010515-1) that established standards for the Laboratory to manage, store, and treat hazardous wastes on-site and to undertake the closure, post closure care, and cleanup as necessary, of permitted waste management units. On November 30, 2010, NMED renewed the Hazardous Waste Facility Permit (the Permit). In June 2020 the Permittees submitted a permit renewal application to the NMED for their review and approval. The Hazardous Waste Facility Permit Community Relations Plan (CRP) describes the scope of public involvement in the activities of the Permit. The CRP is specifically designed to facilitate the community outreach, engagement, and relations activities concerning the Laboratory’s Hazardous Waste Facility Permit and coordinates with but does not include public involvement for other Laboratory programs, initiatives, or environmental activities.

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗

On Single-Cell Enzyme Assays in Marine Microbial Ecology and Biogeochemistry

Extracellular enzyme activity is a well-established parameter for evaluating microbial biogeochemical roles in marine ecosystems. The presence and activity of extracellular enzymes in seawater provide insights into the quality and quantity of organic matter being processed by the present microorganisms. A key challenge in our understanding of these processes is to decode the extracellular enzyme repertoire and activities of natural communities at the single-cell level. Current measurements are carried out on bulk or size-fractionated samples capturing activities of mixed populations. This approach – even with size-fractionation – cannot be used to trace enzymes back to their producers, nor distinguish the active microbial members, leading to a disconnect between measured activities and the producer cells. By targeting extracellular enzymes and resolving their activities at the single-cell level, we can investigate underlying phenotypic heterogeneity among clonal or closely related organisms, characterize enzyme kinetics under varying environmental conditions, and resolve spatio-temporal distribution of individual enzyme producers within natural communities. In this perspective piece, we discuss state-of-the-art technologies in the fields of microfluidic droplets and functional screening of prokaryotic cells for measuring enzyme activity in marine seawater samples, one cell at a time. We further elaborate on how this single-cell approach can be used to address research questions that cannot be answered with current methods, as pertinent to the enzymatic degradation of organic matter by marine microorganisms.

54 ENVIRONMENTAL SCIENCES↗

Optimal Renewable Resource Allocation and Load Scheduling of Resilient Communities

This paper presents a methodology for enhancing community resilience through optimal renewable resource allocation and load scheduling in order to minimize unserved load and thermal discomfort. The proposed control architecture distributes the computational effort and is easier to be scaled up than traditional centralized control. The decentralized control architecture consists of two layers: The community operator layer (COL) allocates the limited amount of renewable energy resource according to the power flexibility of each building. The building agent layer (BAL) addresses the optimal load scheduling problem for each building with the allowable load determined by the COL. Both layers are formulated as a model predictive control (MPC) based optimization. Simulation scenarios are designed to compare different combinations of building weighting methods and objective functions to provide guidance for real-world deployment by community and microgrid operators. The results indicate that the impact of power flexibility is more prominent than the weighting factor to the resource allocation process. Allocation based purely on occupancy status could lead to an increase of PV curtailment. Further, it is necessary for the building agent to have multi-objective optimization to minimize unserved load ratio and maximize comfort simultaneously.

model predictive control↗

A hierarchy of global ocean models coupled to CESM1

We develop a hierarchy of simplified ocean models for coupled ocean, atmosphere, and sea ice climate simulations using the Community Earth System Model version 1 (CESM1). The hierarchy has four members: a slab ocean model, a mixed-layer model (MLM) with entrainment and detrainment, an Ekman MLM, and an ocean general circulation model (OGCM). Flux corrections of heat and salt are applied to the simplified models ensuring that all hierarchy members have the same climatology. We diagnose the needed flux corrections from auxiliary simulations in which we restore the temperature and salinity to the daily climatology obtained from a target CESM1 simulation. The resulting three-dimensional corrections contain the interannual variability fluxes that maintain the correct vertical gradients of temperature and salinity in the tropics. We find that the inclusion of mixed-layer entrainment and Ekman flow produces sea surface temperature and surface air temperature fields whose means and variances are progressively more similar to those produced by the target CESM1 simulation. We illustrate the application of the hierarchy to the problem of understanding the response of the climate system to the loss of Arctic sea ice. We find that the shifts in the positions of the mid-latitude westerly jet and of the Inter-tropical Convergence Zone (ITCZ) in response to sea-ice loss depend critically on upper ocean processes. Specifically, heat uptake associated with the mixed-layer entrainment influences the shift in the westerly jet and ITCZ. Moreover, the shift of ITCZ is sensitive to the form of Ekman flow parameterization.

54 ENVIRONMENTAL SCIENCES↗

CHARGED-CURRENT DOUBLE-DIFFERENTIAL CROSS SECTION MEASUREMENT OF ELECTRON NEUTRINOS IN LOW RECOIL REGION ON HYDROCARBON AT ∼7 GEV

Measuring neutrino mixing angles, especially the CP violation phase and mass hierarchy, is one of the priorities of the neutrino community and long baseline neutrino oscillation programs, such as T2K and NOvA, provided the most precise measurements to date. One of the dominating uncertainties of the measurements is the neutrino interaction model due to the difficulty of modeling the nuclear effects from first principles. As a result, neutrino scattering experiments such as MINERvA were conducted to provide data as input to reduce this uncertainty. This thesis presents a charged-current double-differential cross section measurement of electron neutrinos using the MINERvA detector in terms of available energy (a proxy of energy transfer), three-momentum transfer, and/or transverse momentum of the final state electron. This measurement focuses on the transition region between quasi-elastic and resonance processes, where the multi-nucleon knockout process dominates. The result is compared to a modified GENIE model and similar measurements using muon neutrino samples. In addition, this measurement reproduces the photon-like excess seen by previous MINERvA electron neutrino measurements.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Relationships between fluid mixing, biodiversity, and chemosynthetic primary productivity in Yellowstone hot springs

The factors that influence biodiversity and productivity of hydrothermal ecosystems are not well understood. Here we investigate the relationship between fluid mixing, biodiversity, and chemosynthetic primary productivity in three co-localized hot springs (RSW, RSN, and RSE) in Yellowstone National Park that have different geochemistry. All three springs are sourced by reduced hydrothermal fluid, but RSE and RSN receive input of vapour phase gas and oxidized groundwaters, with input of both being substantially higher in RSN. Metagenomic sequencing revealed that communities in RSN were more biodiverse than those of RSE and RSW in all dimensions evaluated. Microcosm activity assays indicate that rates of dissolved inorganic carbon (DIC) uptake were also higher in RSN than in RSE and RSW. Together, these results suggest that increased mixing of reduced volcanic fluid with oxidized fluids generates additional niche space capable of supporting increasingly biodiverse communities that are more productive. These results provide insight into the factors that generate and maintain chemosynthetic biodiversity in hydrothermal systems and that influence the distribution, abundance, and diversity of microbial life in communities supported by chemosynthesis. These factors may also extend to other ecosystems not supported by photosynthesis, including the vast subterranean biosphere and biospheres beneath ice sheets and glaciers.

59 BASIC BIOLOGICAL SCIENCES↗

Initial plant community responses to hardwood control treatments in restoration of remnant longleaf pine (Pinus palustris) woodlands

Changes in land use over the past century have contributed to substantial losses of longleaf pine (Pinus palustris) woodlands in the southeastern USA and replacement with higher density, mixed pine and hardwood stands that suppress understory development and limit application of prescribed fire. To increase understanding of limiting factors and identify potential approaches for restoring longleaf pine woodlands, we studied in this work initial availability of light and soil water and 2-year (2018–2019) plant community responses after controlling overstory hardwoods in five remnant longleaf pine woodlands having no evidence of previous agriculture at the Savannah River Site near Aiken, SC, USA. Seven hardwood control treatments and a non-treated check were compared in a randomized compete block experiment: cutting, cutting + shredding of logging residues, stem injection with imazapyr herbicide, cutting + basal spray with imazapyr herbicide, cutting + basal spray with triclopyr herbicide, cutting + directed foliar spray with a mixture of glyphosate and imazapyr herbicides, and cutting + broadcast foliar spray with the same herbicide mixture. In the year prior to hardwood cutting (2016), understory light availability averaged 23% of full sun. Throughout the year of treatment installation (2017), average soil water content (SWC) was below permanent wilting point (5.5% SWC) where overstory hardwoods were retained; whereas, it was above wilting point (7.5%) where they had been cut. Thus, combined effects of shade and root competition from overstory hardwoods probably limited cover of herbaceous species in the non-treated check. In the 2 years following treatment, hardwood survival averaged > 99%, 62%, 42% and < 1% for the non-treated check, cutting, shredding, and herbicide treatments, respectively. Relative to the non-treated check, herbaceous species richness was increased by shredding, stem injection, basal spray, or directed foliar treatments; herbaceous cover was increased by basal spray or directed foliar treatments; and woody cover was decreased by directed or broadcast foliar treatments. The directed foliar spray was the most effective treatment for achieving many of the desired understory characteristics of a longleaf pine woodland, including a diverse understory dominated by herbaceous vegetation capable of supporting periodic prescribed fires. Although the imazapyr basal spray treatment increased cover of remnant woodland indicator species, none of the treatments increased richness of this species group, suggesting that restoration of native species composition will be expedited by enrichment seedings or plantings.

60 APPLIED LIFE SCIENCES↗

Superionic conduction using ion aggregates

Project objective: Engineer solid polymeric electrolytes with an optimized, self-assembled, ion network that conducts independently of polymer segmental dynamics. The goal of this project is to engineer an optimized, self-assembled ion aggregate network, by which we can incorporate an aggregate assisted, collective, superionic conduction paradigm into polymeric electrolytes. We do not seek to improve conductivity, although this is a likely result of our approach, but to propose systems in which collective motion is the main conduction mechanism. We believe that once such materials are identified, they will quickly become a subject of research in the solid polymer electrolyte community. With this in mind, we pursue three design strategies: increase ion content in PEG single ion conductors, use mixed anions (including divalent ions as crosslinkers), and introduce swelled polyanion/polycation complexes as a potential ion conducting material.

36 MATERIALS SCIENCE↗

Bioaerosols as indicators of central Arctic ice nucleating particle sources

The Arctic is warming at a rapid rate, with implications for microbial communities as the ecosystems change. Some microbes and biogenic materials can affect the persistence of long-lived mixed-phase clouds by serving as ice nucleating particles (INPs). The presence of INPs modulates the cloud phase, and long-term measurements are important to elucidate their seasonal sources and to predict future change. The Multidisciplinary drifting Observatory for the Study of Arctic Climate (MOSAiC) expedition in 2019–2020 provided the first year-long measurements of bioaerosols and INPs in the central Arctic, with 3 d filters for amplicon sequencing and cumulative INP concentrations from −5 to −30 °C. Here, we investigated the INP seasonal cycle and its relation to the seasonal cycle of bacteria and eukaryotes. INPs were greatly elevated and compositionally similar in summer, aligning with a greater prevalence of local bioaerosol sources, but, despite this, a diverse mixture of sources (marine and terrestrial) was present all times. A common broader Arctic INP population is hypothesized for much of the year by comparable coincident data collected in Svalbard and a sensitivity of both the INPs and bioaerosols to large-scale events.

Barry, Kevin R. [Colorado State Univ., Fort Collin↗