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At least 127 records · Page 7

Relative molecular orientation can impact the onset of plasticity in molecular crystals

Abstract Creating or moving dislocations is the first step to dissipating mechanical energy via plastic deformation under contact loading. In molecular crystals there is both a lattice that defines crystal orientation and a relative orientation of the basis of the molecules. We define a normalization parameter which relates strain at yield, the hardness of the bulk crystal, and a distance parameter analogous to a Burgers vector that nominally predicts the relative ease of initiating plasticity in this broad class of materials. Analyzing the yield behavior of 10 different molecular crystals of varying space groups shows the inter-molecular orientation predicts the experimentally observed applied stress needed to nucleate dislocations. When molecules are oriented ‘parallel’ relative to one another the normalized maximum shear stress at the onset of plasticity is on the order of 3–5 times lower than when molecules within the crystal are ‘anti-parallel’, and molecules with a more equiaxed shape fall in between these bounds. This provides an initial indication of a structural feature which predicts the relative ease of initiating plasticity during contact loading in molecular crystals.

36 MATERIALS SCIENCE↗

The effects of varying colour–luminosity relations on Type Ia supernova science

ABSTRACT The success of Type Ia supernova (SN Ia) distance standardization for cosmology relies on a single global linear relationship between their peak luminosity and colour, the β parameter. However, there are several pieces of evidence and physical reasons to believe that this relation is not universal and may change within different subgroups, or even among individual objects. In this work, we allow β to vary among subpopulations with different observed properties in the cosmological fits. Although the inferred cosmological parameters are consistent with previous studies that assume a single colour–luminosity relation, we find that the SN data favour non-universal distributions of β when split according to SN colour and/or host-galaxy mass. For galaxy mass, we obtain a β-step relation in which low β values occur in more massive galaxies, a trend that can be explained by differing dust reddening laws for two types of environments. For colour, we find that bluer/redder SNe Ia are consistent with a lower/larger β. This trend is explained with β being a combination of a low intrinsic colour–luminosity relation dominant in bluer SNe and a higher extrinsic reddening relation dominant at redder colours. The host-galaxy mass-step correction always provides better distance calibration, regardless of the multiple β approaches, and we suggest that it may come from a difference in intrinsic colour–luminosity properties of SNe Ia in two types of environments. Additionally, we find that blue SNe in low-mass environments are better standard candles than the others.

González-Gaitán, S. (ORCID:0000000195410317)↗

Deep uGMRT observations of the ELAIS-North 1 field: statistical properties of radio–infrared relations up to z ∼ 2

ABSTRACT Comprehending the radio–infrared (IR) relations of the faint extragalactic radio sources is important for using radio emission as a tracer of star formation in high redshift (z) star-forming galaxies (SFGs). Using deep uGMRT observations of the ELAIS-N1 field in the 0.3–0.5 GHz range, we study the statistical properties of the radio–IR relations and the variation of the ‘q-parameter’ up to z = 2 after broadly classifying the faint sources as SFGs and AGN. We find the dust temperature (Tdust) to increase with z. This gives rise to $q_{\rm 24\,\mu m}$, measured at $24\, \mu$m, to increase with z as the peak of IR emission shifts towards shorter wavelengths, resulting in the largest scatter among different measures of q-parameters. $q_{\rm 70\,\mu m}$ measured at $70\, \mu$m, and qTIR using total-IR (TIR) emission are largely unaffected by Tdust. We observe strong, non-linear correlations between the radio luminosities at 0.4 and 1.4 GHz with $70\, \mu$m luminosity and TIR luminosity(LTIR). To assess the possible role of the radio-continuum spectrum in making the relations non-linear, for the first time we study them at high z using integrated radio luminosity (LRC) in the range 0.1–2 GHz. In SFGs, the LRC–LTIR relation remains non-linear with a slope of 1.07 ± 0.02, has a factor of 2 lower scatter compared to monochromatic radio luminosities, and $q^{\rm RC}_{\rm TIR}$ decreases with z as $q^{\rm RC}_{\rm TIR}= (2.27 \pm 0.03)\, (1+z)^{-0.12 \pm 0.03}$. A redshift variation of q is a natural consequence of non-linearity. We suggest that a redshift evolution of magnetic field strengths and/or cosmic ray acceleration efficiency in high-z SFGs could give rise to non-linear radio–IR relations.

79 ASTRONOMY AND ASTROPHYSICS↗

The XMM cluster survey: exploring scaling relations and completeness of the dark energy survey year 3 redMaPPer cluster catalogue

ABSTRACT We cross-match and compare characteristics of galaxy clusters identified in observations from two sky surveys using two completely different techniques. One sample is optically selected from the analysis of 3 years of Dark Energy Survey observations using the redMaPPer cluster detection algorithm. The second is X-ray selected from XMM observations analysed by the XMM Cluster Survey. The samples comprise a total area of 57.4 deg2, bounded by the area of four contiguous XMM survey regions that overlap the DES footprint. We find that the X-ray-selected sample is fully matched with entries in the redMaPPer catalogue, above λ > 20 and within 0.1 <$z$ <0.9. Conversely, only 38 per cent of the redMaPPer catalogue is matched to an X-ray extended source. Next, using 120 optically clusters and 184 X-ray-selected clusters, we investigate the form of the X-ray luminosity–temperature (LX –TX ), luminosity–richness (LX –λ), and temperature–richness (TX –λ) scaling relations. We find that the fitted forms of the LX –TX relations are consistent between the two selection methods and also with other studies in the literature. However, we find tentative evidence for a steepening of the slope of the relation for low richness systems in the X-ray-selected sample. When considering the scaling of richness with X-ray properties, we again find consistency in the relations (i.e. LX –λ and TX –λ) between the optical and X-ray-selected samples. This is contrary to previous similar works that find a significant increase in the scatter of the luminosity scaling relation for X-ray-selected samples compared to optically selected samples.

79 ASTRONOMY AND ASTROPHYSICS↗

Updated universal relations for tidal deformabilities of neutron stars from phenomenological equations of state

Equation of state (EOS) insensitive relations, so-called universal relations, between the neutron star (NS) compactness, its multipolar tidal deformability coefficients, and between the tidal parameters for binary systems are essential to break degeneracies in gravitational wave data analysis. Here, we validate and recalibrate these universal relations using a large set of almost 2 million phenomenological EOSs that are consistent with current observations. In doing so, we extend universal relations to a larger region of the EOS parameter space, most notably to softer EOSs and larger compactnesses. We show that waveform models that neglect higher-than-leading-order tidal deformations of the NSs accumulate as much as 3.5 radians of dephasing from 20Hz to merger. Further, we also perform a full Bayesian parameter estimation of the GW170817 data, and we compare the NS radius constraints produced using universal relations from the literature and the updated fits we propose here. We find that the new fits yield a NS radius that is smaller by about 500 meters. This difference is less than the statistical uncertainty on the radius at the signal-to-noise-ratio of GW170817, but it is significantly larger than the precision anticipated for next-generation detectors.

79 ASTRONOMY AND ASTROPHYSICS↗

Energy cost of localization of relational quantum information

Entanglement of spatially separated quantum states is usually defined with respect to a reference frame provided by some external observer. Thus, if one wishes to localize the quantum information within a spatially separated entangled state, one must enact an entanglement extraction protocol also defined with respect to that external frame. Entanglement extraction for Gaussian ground states in such an external frame construction has been shown to require a minimum energy and is hence an interesting process for gravitational physics, where examinations of localization vs energy cost have a long history. General covariance, however, precludes dependence on external frames. In order to enact an extraction protocol in a generally covariant theory, dependence on the external reference frame must first be removed and the states made relational. Here, we examine the implementation of an extraction protocol for Gaussian states, whose center of mass and relational degrees of freedom are entangled, in a relational toy model where translation invariance stands in for full diffeomorphism invariance. Constructing fully relational states and the corresponding extraction/localization can, in principle, be done in two ways. External frame position information can be removed through 𝐺-twirling over translations or one can spontaneously break the translation symmetry via the gradient of an auxiliary field, or 𝑍-model. We determine the energetics of quantum information localization after the states have been made fully relational via both the 𝐺-twirl and 𝑍-model. We also show one can obtain the 𝐺-twirl construction from a 𝑍-model as a limit of positive operator valued measurements.

79 ASTRONOMY AND ASTROPHYSICS↗

Evaluation of the Specification for Safety-Related Steel Structures for Nuclear Facilities, ANSI/AISC N690-18, for Application to Nuclear Power Plants

This report describes the assessment of the recently published ANSI/AISC N690-18, Specification for Safety-Related Steel Structures for Nuclear Facilities. This work was performed for the U.S. Nuclear Regulatory Commission for potential endorsement of N690-18 for use in the design of nuclear power plants. Currently the NRC endorses the use of an earlier version: N690-1994 (R2004), and thus, a technical review of the updated N690 Specification, which contains significant changes, is warranted. The N690-18 Specification reflects advances and improvements in steel design gained from experience, analytical studies, and experimental data over the years. The N690-18 specification also contains a new Appendix N9 that addresses the design of safety-related steel-plate composite (SC) walls which are a relatively new type of structural member for which previously there has not been any U.S. code or standard that governs its design. The technical review of N690-18 was performed in order to assess the adequacy of the provisions for use by the NRC in updating its regulatory guidance for nuclear power plants. The research developed the technical basis for acceptance of the new specification and also identified areas where additional staff guidance is needed for the design of safety-related steel structures at nuclear power plants. The results of the research have determined that the N690-18 specification is a significant enhancement from the N690-1994 (R2004) edition. The new specification contains substantial upgrades in the design of structural steel and includes new provisions for design of SC wall sections, which can benefit the nuclear power industry as well as the NRC review process. All of the improvements, if endorsed by the NRC with certain regulatory positions, will allow clearer and more consistent regulatory guidance, and will avoid the need for justification by licensees and related reviews each time certain methods or approaches are used.

42 ENGINEERING↗

Infant burn injuries related to water heating for powdered infant formula preparation

Guidance for preparing powdered infant formula (PIF) helps to ensure it meets the nutritional needs of infants and is safe to consume. Among safety concerns is Cronobacter sakazakii contamination which can lead to serious infections and death. PIF preparation guidance varies; there is a lack of consensus on whether there is a need to boil water to inactivate potential Cronobacter and for how long to let the water cool before reconstitution. We sought to quantify the burden of burn injuries among infants related to water heating for PIF preparation. Estimating this burden may help inform preparation recommendations. Burn injuries among infants <18 months of age were identified from 2017 to 2019 National Electronic Injury Surveillance System data collected from sampled hospital emergency departments. Injuries were classified as related to PIF water heating, potentially related to PIF water heating but with undetermined causation, related to other infant feeding aspects, or unrelated to infant formula or breast milk feeding. Unweighted case counts for each injury classification were determined. Across sampled emergency departments, 7 PIF water heating injuries were seen among the 44,395 injuries reported for infants <18 months. No reported PIF water heating injuries were fatal, but 3 required hospitalization. Another 238 injuries potentially related to PIF water heating but with undetermined causation were also seen. Preparation guidance should consider both the potential risk for Cronobacter infection and the potential risk for burns.

60 APPLIED LIFE SCIENCES↗

The Factory and the Beehive. IV. A Comprehensive Study of the Rotation X-Ray Activity Relation in Praesepe and the Hyades

X-ray observations of low-mass stars in open clusters are critical to understanding the dependence of magnetic activity on stellar properties and their evolution. Praesepe and the Hyades, two of the nearest, most-studied open clusters, are among the best available laboratories for examining the dependence of magnetic activity on rotation for stars with masses ≲1 M ⊙ . We present an updated study of the rotation–X-ray activity relation in the two clusters. We updated membership catalogs that combine pre-Gaia catalogs with new catalogs based on Gaia Data Release 2. The resulting catalogs are the most inclusive ones for both clusters: 1739 Praesepe and 1315 Hyades stars. We collected X-ray detections for cluster members, for which we analyzed, re-analyzed, or collated data from ROSAT, the Chandra X-ray Observatory, the Neil Gehrels Swift Observatory, and XMM-Newton. We have detections for 326 Praesepe and 462 Hyades members, of which 273 and 164, respectively, have rotation periods—an increase of 6× relative to what was previously available. We find that at ≈700 Myr, only M dwarfs remain saturated in X-rays, with only tentative evidence for supersaturation. We also find a tight relation between the Rossby number and fractional X-ray luminosity L X /L bol in unsaturated single members, suggesting a power-law index between –3.2 and –3.9. Lastly, we find no difference in the coronal parameters between binary and single members. These results provide essential insight into the relative efficiency of magnetic heating of the stars' atmospheres, thereby informing the development of robust age-rotation-activity relations.

79 ASTRONOMY AND ASTROPHYSICS↗

The Role of Inner H ι Mass in Regulating the Scatter of the Mass–Metallicity Relation

We use 789 disk-like, star-forming galaxies (with 596 H ι detections) from H ι follow-up observations for the SDSS-IV MaNGA survey to study the possible role of inner H ι gas in causing secondary dependences in the mass–gas-phase metallicity relation. We use the gas-phase metallicity derived at the effective radii of the galaxies. We derive the inner H ι mass within the optical radius, but also use the total H ι mass and star formation rate (SFR) for a comparison. We confirm the anticorrelation between the total H ι mass and gas-phase metallicity at fixed stellar mass, but the anticorrelation is significantly strengthened when the total H ι mass is replaced by the inner H ι mass. Introducing a secondary relation with the inner H ι mass can produce a small but noticeable decrease (16%) in the scatter of the mass–gas-phase metallicity relation, in contrast to the negligible effect with the SFR. The correlation with the inner H ι mass is robust when using different diagnostics of metallicity, but the correlation with SFR is not. The correlation with the inner H ι mass becomes much weaker when the gas-phase metallicity is derived in the central region instead of at the effective radius. These results support the idea that the scatter in the mass–metallicity relation is regulated by gas accretion, and not directly by the SFR, and stress the importance of deriving the gas mass and the metallicity from roughly the same region. The new relation between inner H ι mass and gas-phase metallicity will provide new constraints for chemical and galaxy evolution models.

79 ASTRONOMY AND ASTROPHYSICS↗

Correlations between the Neutron Star Mass–Radius Relation and the Equation of State of Dense Matter

We develop an analytic method of inverting the Tolman–Oppenheimer–Volkoff relations to high accuracy. In principle, a specified energy density–pressure relation gives a unique mass–radius (M–R) relation and vice versa. Our method is developed from the strong correlations that are shown to exist between the neutron star mass–radius curve and the equation of state (EOS) or pressure–energy density relation. Selecting points that have masses equal to fixed fractions of the maximum mass, we find a semi-universal power-law relation between the central energy densities, pressures, sound speeds, chemical potentials, and number densities of those stars, with the maximum mass and the radii of one or more fractional maximum mass points. Rms fitting accuracies, for EOSs without large first-order phase transitions, are typically 0.5% for all quantities at all mass points. The method also works well, although less accurately, in reconstructing the EOS of hybrid stars with first-order phase transitions. These results permit, in effect, an analytic method of inverting an arbitrary M–R curve to yield its underlying EOS. We discuss applications of this inversion technique to the inference of the dense matter EOS from measurements of neutron star masses and radii as a possible alternative to traditional Bayesian approaches.

Bayesian statistics↗

Relationships between Cloud Droplet Spectral Relative Dispersion and Entrainment Rate and Their Impacting Factors

Cloud microphysical properties are significantly affected by entrainment and mixing processes. However, it is unclear how the entrainment rate affects the relative dispersion of cloud droplet size distribution. Previously, the relationship between relative dispersion and entrainment rate was found to be positive or negative. To reconcile the contrasting relationships, the Explicit Mixing Parcel Model is used to determine the underlying mechanisms. When evaporation is dominated by small droplets, and the entrained environmental air is further saturated during mixing, the relationship is negative. However, when the evaporation of big droplets is dominant, the relationship is positive. Whether or not the cloud condensation nuclei are considered in the entrained environmental air is a key factor as condensation on the entrained condensation nuclei is the main source of small droplets. However, if cloud condensation nuclei are not entrained, the relationship is positive. If cloud condensation nuclei are entrained, the relationship is dependent on many other factors. High vertical velocity, relative humidity of environmental air, liquid water content, and low droplet number concentration are more likely to cause the negative relationship since new saturation is easier to achieve by evaporation of small droplets. Further, the signs of the relationship are not strongly affected by the turbulence dissipation rate, but the higher dissipation rate causes the positive relationship more significant for a larger entrainment rate. A conceptual model is proposed to reconcile the contrasting relationships. This work enhances the understanding of relative dispersion and lays a foundation for the quantification of entrainment-mixing mechanisms.

54 ENVIRONMENTAL SCIENCES↗

Unsteady- and Steady-State Relative Permeability Study with X-ray and Acoustic Monitoring for CO 2 Storage in Deep Saline Aquifers

In this study, we link the multiphase flow measurements with controls of sedimentary structures (e.g., heterogeneity and anisotropy) on relative permeability to variations in ultrasonic velocities for two deep saline aquifer formations (Entrada and Bluff Sandstones) in the San Juan Basin of the Southwestern USA. The rock specimens were extracted from outcrop sites near Durango, CO, USA. They have distinct differences in grain size, cementation composition, and individual chemical amounts, despite both formations being eolian sandstones. We performed a series of unsteady- and steady-state CO 2 -brine relative permeability experiments under capillary-controlled displacement rates. Unsteady-state experiments were conducted at 71 °C and 9.65 MPa; steady-state experiments were conducted at 85 °C and 22.8 MPa and 89 °C and 24.1 MPa for the Bluff and Entrada Sandstones, respectively. During the unsteady experiments, X-ray computed tomography was used to visualize multiphase flow in porous media and quantify saturations during brine drainage under various flow rates. Scan images and saturation profiles indicate that the CO 2 distribution in the pore volume was strongly impacted by the presence of high-angle cross-laminations, heterogeneous rock structure, and direction of bedding orientation. Those factors contribute to dramatic and quick initial breakthroughs and affect the overall saturation dynamics. Steady-state relative permeability tests were conducted at net flow rates of 1 mL/min for both brine drainage and imbibition. During the experimental steps, the CO 2 fractional flow was increased and decreased for both drainage and imbibition scenarios to mimic the front when CO 2 contacts brine and behind the front when brine enters space previously occupied by CO 2 . It was found that compressional velocity decreased, while shear waves slightly increased as brine saturation decreased. The hysteresis effects for the relative permeability and acoustic velocities were distinct. Furthermore, the CO 2 /brine front stability is quantified by applying a mobility ratio approach to spot saturations at which the boundary line between fluids becomes uneven. The results presented in this work can potentially boost the quality and precision of forecasts for the CO 2 storage projects in which the vertical and horizontal core-scale heterogeneity and anisotropy impact the plume migration within host reservoirs.

carbon dioxide (CO2)↗

Regional Relative Risk, a Physics-Based Metric for Characterizing Airborne Infectious Disease Transmission

Airborne infectious disease transmission events occur over a wide range of spatial scales and can be an important means of disease transmission. Physics- and biology-based models can assist in predicting airborne transmission events, overall disease incidence, and disease control strategy efficacy. We describe a new theory that extends current approaches for the case in which an individual is infected by a single airborne particle, including the scenario in which numerous infectious particles are present in the air but only one causes infection. A single infectious particle can contain more than one pathogenic microorganism and be physically larger than the pathogen itself. This approach allows robust relative risk estimates even when there is wide variation in (i) individual exposures and (ii) the individual response to that exposure (the pathogen dose-response function can take any mathematical form and vary by individual). Based on this theory, we propose the regional relative risk—a new metric, distinct from the traditional relative risk metric, that compares the risk between two regions. In theory, these regions can range from individual rooms to large geographic areas. In this paper, we apply the regional relative risk metric to outdoor disease transmission events over spatial scales ranging from 50 m to 20 km, demonstrating that in many common cases minimal input information is required to use the metric. Also, we demonstrate that the model predictions are consistent with data from prior outbreaks. Future efforts could apply and validate this theory for other spatial scales, such as transmission within indoor environments. This work provides context for (i) the initial stages of an airborne disease outbreak and (ii) larger-scale disease spread, including unexpected low-probability disease “sparks” that potentially affect remote populations, a key practical issue in controlling airborne disease outbreaks.

54 ENVIRONMENTAL SCIENCES↗

Extending the Dynamic Range of Galaxy Outflow Scaling Relations: Massive Compact Galaxies with Extreme Outflows

We investigate galactic winds in the HizEA galaxies, a collection of 46 late-stage galaxy mergers at z = 0.4–0.8, with stellar masses of $\mathrm{log}({M}_{* }/{M}_{\odot })=10.4\mbox{--}11.5$ , star formation rates (SFRs) of 20–500 M ⊙ yr -1 , and ultra-compact (a few 100 pc) central star-forming regions. We measure their gas kinematics using the Mg II λλ 2796,2803 absorption lines in optical spectra from MMT, Magellan, and Keck. We find evidence of outflows in 90% of targets, with maximum outflow velocities of 550–3200 km s -1 . We combine these data with ten samples from the literature to construct scaling relations for outflow velocity versus SFR, star formation surface density (Σ SFR ), M * , and SFR/M * . The HizEA galaxies extend the dynamic range of the scaling relations by a factor of ~2–4 in outflow velocity and an order of magnitude in SFR and Σ SFR . The ensemble scaling relations exhibit strong correlations between outflow velocity, SFR, SFR/R, and Σ SFR , and weaker correlations with M * and SFR/M * . The HizEA galaxies are mild outliers on the SFR and M* scaling relations, but they connect smoothly with more typical star-forming galaxies on plots of outflow velocity versus SFR/R and Σ SFR . These results provide further evidence that the HizEA galaxies' exceptional outflow velocities are a consequence of their extreme star formation conditions rather than hidden black hole activity, and they strengthen previous claims that Σ SFR is one of the most important properties governing the velocities of galactic winds.

79 ASTRONOMY AND ASTROPHYSICS↗

Cognitive aging outcomes are related to both tau pathology and maintenance of cingulate cortex structure

Abstract INTRODUCTION Successful cognitive aging is related to both maintaining brain structure and avoiding Alzheimer's disease (AD) pathology, but how these factors interplay is unclear. METHODS A total of 109 cognitively normal older adults (70+ years old) underwent amyloid beta (Aβ) and tau positron emission tomography (PET) imaging, structural magnetic resonance imaging (MRI), and cognitive testing. Cognitive aging was quantified using the cognitive age gap (CAG), subtracting chronological age from predicted cognitive age. RESULTS Lower CAG (younger cognitive age) was related to slower decline in episodic memory, multi‐domain cognition, and atrophy of the midcingulate cortex (MCC). Lower entorhinal cortical tau was linked to slower decline in episodic memory, multi‐domain cognition, and hippocampal atrophy. DISCUSSION These results suggest that aging outcomes may be influenced by two independent pathways: one associated with tau accumulation, affecting primarily memory and hippocampal atrophy, and another involving tau‐independent structural preservation of the MCC, benefiting multi‐domain cognition over time. Highlights Younger cognitive age (lower cognitive age gap [CAG]) is related to slower cognitive decline. Lower CAG is linked to slower midcingulate cortex (MCC) atrophy. Reduced tau in the entorhinal cortex is related to less hippocampal atrophy and cognitive decline. Structural preservation of the MCC benefits multi‐domain cognition over time. Two independent pathways influence cognitive aging: tau accumulation and MCC preservation.

Neurosciences & Neurology↗

Spatiotemporal Dynamics of the Relative Abundance of Soil Nutrient‐Degrading Enzyme‐Encoding Genes Across Continental US Ecoregions

Understanding the spatiotemporal patterns in the relative abundance of soil extracellular enzyme‐encoding genes is critical for predicting microbial responses to environmental change and their potential role in nutrient cycling. Yet, integrating novel metagenomic observations with spatiotemporal environmental gradients to infer regional patterns and future trajectories has remained unclear. To address this gap, we applied a machine learning (ML) approach, integrating soil metagenomic data with environmental variables—soil properties, topography, vegetation, and climate—to predict the relative abundance of enzyme‐encoding genes for soil carbon (C), nitrogen (N), and phosphorus (P) across surface soils of the continental United States. We assessed potential responses under future emission scenarios (SSP2‐4.5 and SSP5‐8.5) by comparing a baseline (1985–2014) to a future period (2071–2100). The ML model explained 57%–63% of baseline variation. Precipitation was identified as the most influential factor for the relative abundance of C‐ and N‐degrading enzyme‐encoding genes, while slope length, representing horizontal distance that water can travel downslope, was the primary driver for P‐degrading enzyme‐encoding genes abundance. Projections revealed spatially heterogeneous shifts across continental US ecoregions: the relative abundance of C‐ and N‐degrading enzyme‐encoding genes decreased in wetter ecoregions and increased in drier ecoregions under future climate, while P‐degrading enzyme‐encoding genes abundance decreased significantly in semiarid and Mediterranean ecoregions. This study demonstrates the utility of metagenomic data for mapping soil genetic potential and predicting its regional response to environmental change, to inform ecosystem management strategies.

extracellular enzyme-encoding genes↗

Uncovering Sequence and Structural Characteristics of Fungal Expansin‐Related Proteins With Potential to Drive Substrate Targeting

Expansins loosen plant cell wall networks through disrupting non-covalent bonds between cellulose microfibrils and matrix polysaccharides. Whereas expansins were first discovered in plants, expansin-related proteins have since been identified in bacteria and fungi. The biological function of microbial expansins remains unclear; however, several studies have shown distinct binding preferences toward different structural polysaccharides. Earlier studies of bacterial expansin-related proteins uncovered sequence and structural features that correlate to substrate binding. Herein, 20 fungal expansin-related sequences were recombinantly produced in Komagataella phaffii, and the purified proteins were compared in terms of substrate binding to cellulosic and chitinous substrates. The impact of pH on the zeta potential of prioritized substrates was also measured, and Principal Component Analysis was performed to uncover correlations between protein characteristics (e.g., pI, hydrophobicity, surface charge distribution) and measured substrate binding preferences. Whereas acidic proteins with a predicted pI less than 5.0 preferentially bound to chitin, basic proteins with pI greater than 8.0 preferentially bound to xylan and xylan-containing fiber. Similar to many cellulases, binding to cellulose was correlated to relatively high aromatic amino acid content in the protein sequence and presence of a carbohydrate binding module (CBM), which in the case of expansins is a C-terminal CBM63. Whereas overall sequence characteristics could be correlated to substrate binding preference, the identity of amino acids occupying conserved positions that impact protein activity was better correlated with loosenin versus expansin classifications.

chitin↗