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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 127 records · Page 7
All sourcesNASA NTRSDOE OSTI
DOE OSTI2020

Adsorption of Rare Earth Elements onto DNA-Functionalized Mesoporous Carbon

The recovery and separation of rare earth elements (REEs) are of national importance owing to the specific usages, high demand, and low supply of these elements. In this research, we have investigated the adsorption of rare earth elements onto DNA-functionalized mesoporous carbons with a BET surface area of 605 m2/g and a median mesopore width of 48 Å. Additionally, three types of single-stranded DNA, one with 100 base units of thymine, another with 20 units of thymine, and the third, a 2000 unit long DNA from salmon milt were grafted on the carboxylated mesoporous carbon surface. All of the DNA-functionalized mesoporous carbons demonstrated higher adsorption of REEs compared to pristine mesoporous carbon and DNA grafted with 100 units of thymine demonstrated slightly higher adsorbed amounts compared to others. Pure neodymium (Nd(III)) adsorption in the aqueous phase demonstrated an adsorbed amount of 110.4 mg/g with respect to the initial concentration of 500 mg/g. A pH variation study with pure Nd(III) demonstrated that the adsorbed amount is higher at elevated pH compared to that at lower pH, thereby suggesting possible recovery at lower pH. Adsorption of a mixture of 16 REEs, including Sc, Lu, Tm, Yb, Er, Ho, Tb, Dy, Y, Eu, Gd, Sm, Ce, Nd, Pr, and La revealed that the adsorbed amount increased with an increase in the atomic weight and metallic radii of elements within the lanthanides. The calculation of the distribution coefficients for all of the equilibrium adsorption amounts suggested that adsorption is more effective in the lower concentration region. The Nd L3-edge X-ray absorption near edge structure (XANES) confirmed a 3+ oxidation state of Nd in the adsorbed phase. The extended X-ray absorption fine structure (EXAFS) confirmed the local atomic structure relaxation of Nd complexes in the adsorbed phase and shortening of the Nd–O bond distance by about 0.03–0.04 Å, which may be associated with their local complexation at the carbon surface.

36 MATERIALS SCIENCE↗
DOE OSTI2021

The homogenous alternative to biomineralization: Zn- and Mn-rich materials enable sharp organismal “tools” that reduce force requirements

We measured hardness, modulus of elasticity, and, for the first time, loss tangent, energy of fracture, abrasion resistance, and impact resistance of zinc- and manganese-enriched materials from fangs, stings and other “tools” of an ant, spider, scorpion and nereid worm. The mechanical properties of the Zn- and Mn-materials tended to cluster together between plain and biomineralized “tool” materials, with the hardness reaching, and most abrasion resistance values exceeding, those of calcified salmon teeth and crab claws. Atom probe tomography indicated that Zn was distributed homogeneously on a nanometer scale and likely bound as individual atoms to more than ¼ of the protein residues in ant mandibular teeth. This homogeneity appears to enable sharper, more precisely sculpted “tools” than materials with biomineral inclusions do, and also eliminates interfaces with the inclusions that could be susceptible to fracture. Based on contact mechanics and simplified models, we hypothesize that, relative to plain materials, the higher elastic modulus, hardness and abrasion resistance minimize temporary or permanent tool blunting, resulting in a roughly 2/3 reduction in the force, energy, and muscle mass required to initiate puncture of stiff materials, and even greater force reductions when the cumulative effects of abrasion are considered. We suggest that the sharpness-related force reductions lead to significant energy savings, and can also enable organisms, especially smaller ones, to puncture, cut, and grasp objects that would not be accessible with plain or biomineralized “tools”.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2022

Quantifying fish otolith mineralogy for trace-element chemistry studies

Otoliths are frequently used to infer environmental conditions or fish life history events based on trace-element concentrations. However, otoliths can be comprised of any one or combination of the three most common polymorphs of calcium carbonate - aragonite, calcite, and vaterite - which can affect the ecological interpretation of otolith trace-element results. Previous studies have reported heterogeneous calcium carbonate compositions between left and right otoliths but did not provide quantitative assessments of polymorph abundances. In this study, neutron diffraction and Raman spectroscopy were used to identify and quantify mineralogical compositions of Chinook salmon Oncorhynchus tshawytscha otolith pairs. We found mineralogical compositions frequently differed between otoliths in a pair and accurate calcium carbonate polymorph identification was rarely possible by visual inspection alone. The prevalence of multiple polymorphs in otoliths is not well-understood, and future research should focus on identifying otolith compositions and investigate how variations in mineralogy affect trace-element incorporation and potentially bias environmental interpretations.

60 APPLIED LIFE SCIENCES↗
DOE OSTI2025

Ecosystem consequences of a nitrogen-fixing proto-organelle

Microscale symbioses can be critical to ecosystem functions, but the mechanisms of these interactions in nature are often cryptic. Here, we use a combination of stable isotope imaging and tracing to reveal carbon (C) and nitrogen (N) exchanges among three symbiotic primary producers that fuel a salmon-bearing river food web. Bulk isotope analysis, nanoSIMS (secondary ion mass spectrometry) isotope imaging, and density centrifugation for quantitative stable isotope probing enabled quantification of organism-specific C- and N-fixation rates from the subcellular scale to the ecosystem. After winters with riverbed-scouring floods, the macroalga Cladophora glomerata uses nutrients in spring runoff to grow streamers up to 10 m long. During summer flow recession, riverine N concentrations wane and Cladophora becomes densely epiphytized by three species of Epithemia, diatoms with N-fixing endosymbionts (proto-organelles) descended from a free-living Crocosphaera cyanobacterium. Over summertime epiphyte succession on Cladophora, N-fixation rates increased as Epithemia spp. became dominant, Cladophora C-fixation declined to near zero, and Epithemia C-fixation increased. Carbon transfer to caddisflies grazing on Cladophora with high densities of Epithemia was 10-fold higher than C transfer to caddisflies grazing Cladophora with low Epithemia loads. In response to demand for N, Epithemia allocates high levels of newly fixed C to its endosymbiont. Consequently, these endosymbionts have the highest rates of C and N accumulation of any taxon in this tripartite symbiosis during the biologically productive season and can produce one of the highest areal rates of N-fixation reported in any river ecosystem.

Marks, Jane C. [Northern Arizona Univ., Flagstaff,↗
DOE OSTI2021

Greater vulnerability of snowmelt-fed river thermal regimes to a warming climate

While the advective flux from cool melt runoff can be a significant source of thermal energy to mountainous rivers, it has been a much less addressed process in river temperature modeling and thus our understanding is limited with respect to the spatiotemporal effect of melt on river temperatures at the watershed scale. In particular, the extent and magnitude of the melt cooling effect in the context of a warming climate are not yet well understood. To address this knowledge gap, we improved a coupled hydrology and stream temperature modeling system, Distributed Hydrology Soil Vegetation Model and River Basin Model (DHSVM-RBM), to account for the thermal effect of cool snowmelt runoff on river temperatures. The model was applied to a snow-fed river basin in the Pacific Northwest to evaluate the responses of snow, hydrology, stream temperatures, and potential fish growth to future climates. Historical simulations suggest that snowmelt can notably reduce the basin-wide peak summer temperatures particularly at high-elevation tributaries, while the thermal impacts of melt water can persist through the summer along the mainstem. Ensemble climate projections suggested that a warming climate will decrease basin mean peak snow and summer streamflow by 92% and 60% by the end of the century. Due to the compounded influences of warmer temperatures, lower flows and diminished cooling from melt, rivers reaches in high elevation snow-dominated areas were projected to be most vulnerable to future climate change, showing the largest increases in summer peak temperatures. As a result, thermal habitat used by anadromous Pacific salmon was projected to exhibit substantially lower growth potential during summer in future. These results have demonstrated the necessity of accounting for snowmelt influence on stream temperature modeling in mountainous watersheds.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2025

Effects of sampling techniques on short-term survival and genotyping success of salmonid fry

ABSTRACT Objective Genetics tools have become an integral part of managing and understanding fish populations. Generally, a small tissue sample, such as a fin clip, is taken and then genotyped, with little effect on survival of the fish. However, tissue sampling may have a larger effect on juvenile fish survival compared to their adult counterparts. We evaluated survival and genotyping success of various genetic sampling techniques for Chinook Salmon Oncorhynchus tshawytscha and Rainbow Trout Oncorhynchus mykiss fry. Methods Three sampling treatments were evaluated including control (anesthetized and handled), fin clipping (partial caudal fin clip), and swabbing (OmniSwab was used to collect external mucus). Survival was monitored for 12 d posttreatment, and genotyping success was evaluated. Results Survival was high in all treatment groups (i.e., 0.93–1.00) but, on average, was lower in the swab treatment group. Genotyping was successful in 100% of the fin clip samples and 11–50% of the swab samples. Conclusions Results of this study suggest that sampling caudal-fin tissue does not negatively affect fry short-term survival and the small tissue samples yield highly successful genotyping results. Swabbing did not produce successful genotyping results, and fish sampled with swabs experienced higher mortality than those that received fin clips. Results indicate that fin clips should be used for collection of genetic samples from fry.

McCarrick, Darcy K.↗
DOE OSTI2022

Riparian vegetation shade restoration and loss effects on recent and future stream temperatures

River temperatures are expected to increase this century harming species requiring cold-water habitat unless restoration activities protect or improve habitat availability. Local shading by riparian vegetation can cool water temperatures, but uncertainty exists over the scaling of this local effect to larger spatial extents. Here, we evaluate this issue using a regional spatial stream network temperature model with covariates representing shade effects to predict mean August stream temperatures across 78,195 km of tributaries flowing into the Columbia River in the northwestern United States. We evaluate nine scenarios predicting stream temperatures for three riparian shade conditions (current, restored, and no riparian vegetation) within three different climate periods (2000s, 2040s, and 2080s). Results suggest riparian shade restoration (2000s climate) could decrease mean August stream temperatures by 0.62°C across the study network. Under the same restored shade conditions, temperature predictions for tributaries at their confluence with the Columbia River range from 0.02 to 2.08°C cooler than under current shade conditions. The climate warming effect predicted for the 2040s and 2080s, however, is greater than the cooling effect from restoring riparian shade. Streams less than 10-m bankfull width cooled more frequently with riparian shade restoration. In Oregon, the proportion of fish habitat for salmon and trout rearing and migration that meet temperature numeric water quality criteria could be increased by 20% under restored shade conditions although net habitat declines may still occur in the future. We conclude riparian vegetation restoration could partially mitigate future warming and help maintain cold-water habitats that function as thermal refuges if implemented strategically.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2022

Ecological information and approaches needed for risk communication dialogs for acute or chronic environmental crises

Scientists, social scientists, risk communicators, and many others are often thrust into a crisis situation where they need to interact with a range of stakeholders, including governmental personnel (tribal, U.S. federal, state, local), local residents, and other publics, as well as other scientists and other risk communicators in situations where information is incomplete and evolving. This paper provides: (1) an overall framework for thinking about communication during crises, from acute to chronic, and local to widespread, (2) a template for the types of ecological information needed to address public and environmental concerns, and (3) examples to illustrate how this information will aid risk communicators. The main goal is providing an approach to the knowledge needed by communicators to address the challenges of protecting ecological resources during an environmental crisis, or for an on-going, chronic environmental issue. To understand the risk to these ecological resources, it is important to identify the type of event, whether it is acute or chronic (or some combination of these), what receptors are at risk, and what stressors are involved (natural, biological, chemical, radiological). For ecological resources, the key information a communicator needs for a crisis is whether any of the following are present: threatened or endangered species, species of special concern, species groups of concern (e.g., neotropical bird migrants, breeding frogs in vernal ponds, rare plant assemblages), unique or rare habitats, species of commercial and recreational interest, and species/habitats of especial interest for medicinal, cultural, or religious activities. Communication among stakeholders is complicated with respect to risk to ecological receptors because of differences in trust, credibility, empathy, perceptions, world view valuation of the resources, and in many cases, a history of misinformation, disinformation, or no information. Exposure of salmon spawning in the Columbia River to hexavalent chromium from the Hanford Site is used as an example of communication challenges with different stakeholders, including Native Americans with Tribal Treaty rights to the land.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2020

Has primary production declined in the Salish Sea?

Declining primary production has been proposed as an explanation for the declines in coho (Oncorhynchus kisutch) and Chinook (Oncorhynchus tshawytscha) salmon in the Salish Sea since the 1970s. Marine sediments maintain a continuous record of conditions in the overlying water. We used stable isotopes of organic carbon and nitrogen measured in 21 sediment cores to determine the contributions and fluxes of marine-derived and terrigenous organic matter over time. The flux of marine-derived organic matter shows no trend for at least the last 100 years. An apparent increase in the marine flux in recent years is due to remineralization of organic matter as it passes through surface sediments. In contrast, the flux of terrigenous organic matter has increased over the last century in the Strait of Georgia, while in Puget Sound, terrigenous flux peaked in the mid-20th century. Total primary production has neither increased nor decreased in the Salish Sea over the last century. Consequently, a decline in primary production cannot explain recent declines in fish populations.

58 GEOSCIENCES↗
DOE OSTI2023

Factors affecting powerhouse passage of spring migrant smolts at federally operated hydroelectric dams of the Snake and Columbia rivers

From 2008 to 2018, acoustic telemetry studies were conducted to evaluate dam passage survival of spring migrant Chinook salmon and steelhead smolts at seven of the eight federally operated dams on the lower Snake and Columbia rivers. Data from over 87 000 dam passage events were evaluated using regression modeling to identify the effect of spill operations, environmental conditions, and fish characteristics on powerhouse passage probability. In general, powerhouse passage was positively correlated with discharge, negatively correlated with forebay temperature and fish size, and higher for fish that passed the dam at night and for those that approached from the powerhouse side of the river, suggesting powerhouse passage is largely a function of smolt activity level and swimming ability. As such, spilling large volumes of water to reduce powerhouse passage is likely to be most effective during times of reduced activity and swimming ability (e.g., at night, high flows, and cold temperatures). This information can be used to develop dam- and time-specific spill operations that optimize smolt passage, power generation, and other competing demands, such as adult passage.

60 APPLIED LIFE SCIENCES↗
DOE OSTI2021

Evaluation of a Surface Spill Operation to Return Adult Steelhead Overshoots Downstream of McNary Dam

This study, funded by the U.S. Army Corps of Engineers (USACE), was conducted by the Pacific Northwest National Laboratory to evaluate the efficacy of operating one Top Spill Weir (TSW) at McNary Dam outside the normal TSW operation dates for juvenile salmon passage. Of interest is whether the TSW is an effective downstream passage route for adult steelhead overshoots. Overshoots are fish which, having passed upstream at McNary Dam, must pass downstream to return to their natal stream to spawn. This report covers Fall (2019) and Spring (2020) study periods. The study design arranged the available 24 hours of TSW spill per week into weekly blocks with sub-blocks differentiated into day and night operations with TSW discharge periods of 4- and 8-hours duration. Hydroacoustic techniques were used to sample adult fish passage at the TSW and at turbine units 1 and 10. The experimental design contrasted TSW spill periods of differing duration and at different times of the day. The small number of fish detected passing the TSW, and the smaller number of fish detected passing the turbine units, were best suited to an ad hoc, exploratory approach to evaluating the effect of TSW spill. It is worthwhile to note that the operations data obtained for the fall study period had a greater than expected number of gaps and apparent anomalies that we believe were a result of how the data were aggregated. These problems are not particularly problematic for the present study, because the available data still provide a good indication of whether the TSW was operating at each point in time. TSW flows in both fall and spring data sets were able to be cleaned up using the established relationship between forebay elevation and TSW discharge rate. Additional cleanup of operations data would be needed, however, if more quantitative evaluation of dam-wide flow and passage relationships were needed. This study contrasted TSW spill periods of differing duration and at different times of the day. The small number of fish detected passing the TSW, and the smaller number of fish detected passing the turbine units were best suited to an ad hoc, exploratory approach to evaluating the effect of TSW spill. Spring adult steelhead passage numbers estimated using hydroacoustics were notably lower than during the fall study period, and that was consistent with our analysis of PIT tagged fish likely to be in the vicinity during each study period. Detections of fish in BlueView sampling areas upstream of the TSW and powerhouse were not correlated with detections of fish passing hydroacoustic sampling areas, which suggests that fish approaching the face of the dam can move around the forebay before passing. Other fish detected in the forebay in large numbers, such as shad, were able to be filtered out of steelhead passage counts and did not appear to be influencing hydroacoustic passage rate estimates. A pulse of passage at the initial TSW opening was weakly evident, but trends across 4- and 8-hour operational periods did not show a distinct decline in passage over time as TSW operation continued. Our findings do not indicate a reason to choose one 8-hour period over two 4-hour periods, or vice versa. This suggests that the duration of spill periods can be chosen based on operational or other considerations. Passage rates were consistently higher during the daytime TSW discharge periods, relative to nighttime TSW discharge periods. The experimental design of the current study used start times near dawn for day periods and near dusk for night periods.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2020

Evaluation of Foster Dam Juvenile Fish Passage, 2018 (Final Report)

This report presents the results of a fish passage study conducted by the Pacific Northwest National Laboratory (PNNL) for the U.S. Army Corps of Engineers Portland District (USACE) at Foster Dam (herein, Foster) during the spring (March–June) and fall (October–December) of 2018. The goal of this study was to provide biologists, engineers, resource managers, and regional decision-makers with information about passage of juvenile Chinook salmon and juvenile steelhead (or appropriate surrogates) through specific routes at Foster. The results of this study are intended to help facilitate decision-making regarding long-term measures for enhancing salmonid passage at Foster. Radio telemetry (RT) methods were instituted at low winter reservoir forebay elevation (low pool, 613 ft mean sea level (msl); spring 2018 and fall 2018) and high summer reservoir forebay elevation (high pool, 635 ft msl; late spring and early summer 2018) to accomplish the following objectives: I. Estimate the following passage metrics under typical operations (i.e., baseline conditions): a. Overall dam-passage survival and survival specific to each route of dam passage, calculated using two different methods: i. Cormack-Jolly-Seber (CJS) estimate: Probability of survival from dam passage to detection at the Primary Array, 19 river kilometers (rkm) downstream of Foster. ii. Virtual Release/Dead Fish Correction (ViRDCt) estimate: Corrects the bias that occurs from misidentifying fish that did not survive dam-passage as alive at the tailrace Egress Array, allowing an estimate of survival from dam passage to this array, 2.5 rkm downstream of Foster. b. Route distribution (passage proportions by route; also known as “passage efficiencies”). c. Efficiency metrics i. Dam-passage efficiency (DPE), the proportion of total fish passing the dam relative to the number of total fish detected in the near forebay of the dam and therefore available to pass. ii. Fish passage efficiency (FPE), the proportion of fish passing via a non-turbine route, relative to the number of total fish in the near forebay and available to pass. iii. Fish weir efficiency (FWE) and spill bay efficiency (SBE), the proportion of fish passing the weir or spill bays, respectively, relative to the total number of fish passing the dam. d. Reservoir residency time (time elapsed between release into reservoir and dam passage) and travel times through the system. II. Estimate efficiency and effectiveness of the new fish weir, compared to the turbines and the spillway. III. Under alternative operations, compare passage through each route (turbines, weir, spillway) using a block/treatment (on/off) design similar to the 2015 and 2016 studies. IV. Estimate efficiency of the new fish weir operating at a low level of discharge (< 500 cfs) and a high level of discharge (= 500 cfs), as well as dam passage survival at each weir discharge level. V. Evaluate survival and behavior of hatchery summer steelhead to wild surrogate winter steelhead for potential use of summer steelhead as a surrogate species winter steelhead. VI. Evaluate juvenile passage rates in the auxiliary water supply (AWS), forebay water supply (FWS), and hatchery water supply (HWS).

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2024

Optimization and Commercialization of the Juvenile Eel/Lamprey Acoustic Transmitter and Micro-battery (CRADA 477)

Through collaboration with partners under this CRADA, we continued to optimize the Eel/Lamprey Acoustic Transmitter (ELAT) of the Juvenile Salmon Acoustic Telemetry System (JSATS) to enhance its capability to track sensitive species and early life stages of fish with 3D and sub-meter accuracy. The transmitter firmware was improved to offer new functionalities, and the circuit design was revised to provide significantly more accurate frequency transmission. The transmitter's transducer was replaced with a shorter, more energy-efficient model. Additionally, the manufacturing processes for the transmitter and the microbattery used in it were improved. The outcomes of this work help advance understanding of migration timing and behaviors, habitat use, and survival rates of these species, supporting more informed management decisions for new and existing hydroelectric facilities and better designs for new hydropower systems that minimize or avoid environmental impacts.

13 HYDRO ENERGY↗
DOE OSTI2019

Using acoustic telemetry for high-resolution sablefish movement informing potential interactions with a tidal turbine

As the MHK industry moves forward to the commercial phase, knowledge of potential environmental effects need to be documented and established. At present, the potential for fish interactions and subsequent injury or mortality are a significant concern with instream turbines. Sensors, methodologies, and analyses need to be developed to detect collision or near-miss events. These data will reduce uncertainty of the likelihood of such events and provide information to regulators to make informed decisions on permitting and possible mitigation measures if needed. Acoustic telemetry is a primary method for studying fine-scale fish movements because it can remotely track fish in three dimensions with accuracy. The Juvenile Salmon Acoustic Telemetry System (JSATS) developed by Pacific Northwest National Laboratory has proven effective for fish passage estimates and fine-scale movement in river impoundments and near dams. Leveraging the success of previous JSATS applications and applying it to the marine environment, juvenile sablefish (Anoplopoma fimbria) were tagged and tracked using a fixed-position receiver array in a marine tidal channel for the first time. Applying this technology to future installations of MHK turbines will provide information on fish avoidance and evasion behavior as well as blade strike and potential injury and mortality.

Staines, Garrett J.↗
DOE OSTI2019

Integrating Hybrid-Clustering and Localized Regression for Time Synchronization of a Hierarchical Underwater Acoustic Sensor Array

Time synchronization is a critical requirement for the application of underwater acoustic sensor network (UWSN). Although a number of time synchronization protocols have been proposed for UWSN, none of them can be directly applied to autonomous acoustic receivers due to lack of hardware platform to communicate with each other. In this paper, we propose a machine learning-based time synchronization framework for autonomous receiver arrays, using the Juvenile Salmon Acoustic Telemetry System as a case study. The proposed framework consists of array partition and time synchronization. Using detections of receiver attached beacons as input, this framework synchronizes all receiver clocks to a root receiver clock. The framework has been successfully used in a field study at Trevallyn Dam forebay in Tasmania, Australia.

Fu, Tao↗
DOE OSTI2019

Does the Hood Canal Bridge traffic noise affect migrating steelhead smolts?

Recent research conducted by NOAA’s Manchester Research Laboratory has provided strong evidence of a substantial migration interference and increased mortality risk associated with the Hood Canal Bridge , which drives the need to investigate the sound and vibration generated by the vehicles crossing the bridge. A month-long monitoring of in-water sound pressure and the vibration of the bridge pontoons was performed at the Hood Canal Bridge by three sets of autonomous sound and vibration recording systems deployed along the bridge. At each deployment site, sound pressure in water was recorded by a hydrophone submerged three meters under water, and the vibration of the bridge pontoon was recorded by an array of three orthogonally mounted single-axis accelerometers. Both sound pressure and acceleration data were analyzed and compared to the threshold levels suggested by previous studies. Results show that the observed sound pressure levels and particle accelerations are strongly correlated with traffic volume across the bridge, and particle accelerations occasionally exceeded the threshold levels that could elicit the avoidance behavior of juvenile salmon. It is concluded that the Hood Canal Bridge traffic noise can potentially affect migrating salmonids due to the intense particle accelerations caused by the bridge pontoons in water.

Zang, Xiaoqin↗
DOE OSTI2025

Biophysical model of eelgrass and water quality in Coos Bay, OR shows greater mitigation potential for ocean acidification than hypoxia

Seagrass beds provide important ecosystem services and are valued, in part, for their potential to mediate stressors such as ocean acidification and hypoxia (OAH) for sensitive species. However, the susceptibility of seagrasses to anthropogenic impacts and recent declines motivate the need to better understand the drivers of seagrass and the water quality consequences that occur with variation in seagrass abundance. To meet this need, we leveraged existing monitoring data (water quality and seagrass), hydrodynamic circulation model, and biogeochemical model framework with seagrass submodel, to produce a biophysical model of Coos Bay estuary, Oregon, U.S. The model includes biogeochemical processes involving water quality, plankton, seagrass, and sediment-water interactions. Ecosystem models like this are useful for evaluating complex estuarine systems because they allow us to extend our understanding of system dynamics beyond existing observations and perform experiments to identify the processes driving observed patterns. We used the biophysical model of Coos Bay to evaluate the dynamics of water quality and native eelgrass (Zostera marina) under three eelgrass abundance scenarios (zero eelgrass, current extent, and maximum observed extent) to elucidate the relationship between eelgrass and OAH. Including eelgrass in the Coos Bay model produced results that more closely resembled water quality observations - dissolved oxygen (DO) and pH were more dynamic in simulations with eelgrass, often having both higher highs and lower lows. While there were some areas of the estuary where DO improved with the addition of eelgrass to the model there was overall a small net increase in harmful DO conditions (based on a salmon physiological threshold). In contrast, ocean acidification conditions, pH and calcium carbonate saturation state for aragonite (Ω), were improved (based on oyster requirements) with the addition of eelgrass - although the magnitude of improvement differed seasonally and spatially. Our new model represents a useful tool - one which accounts for and controls the relevant physical and biogeochemical processes - to evaluate conditions that confer resilience or enhance vulnerability to OAH in an important Pacific Northwest coastal estuary and results can inform the OAH-related dynamics occurring in other eastern boundary current estuaries.

FVCOM-ICM↗