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At least 127 records · Page 7

Solution influence on biomolecular equilibria - Nucleic acid base associations

Various attempts to construct an understanding of the influence of solution environment on biomolecular equilibria at the molecular level using computer simulation are discussed. First, the application of the formal statistical thermodynamic program for investigating biomolecular equilibria in solution is presented, addressing modeling and conceptual simplications such as perturbative methods, long-range interaction approximations, surface thermodynamics, and hydration shell. Then, Monte Carlo calculations on the associations of nucleic acid bases in both polar and nonpolar solvents such as water and carbon tetrachloride are carried out. The solvent contribution to the enthalpy of base association is positive (destabilizing) in both polar and nonpolar solvents while negative enthalpies for stacked complexes are obtained only when the solute-solute in vacuo energy is added to the total energy. The release upon association of solvent molecules from the first hydration layer around a solute to the bulk is accompanied by an increase in solute-solvent energy and decrease in solvent-solvent energy. The techniques presented are expectd to displace less molecular and more heuristic modeling of biomolecular equilibria in solution.

Pohorille, A.↗

The general Lie group and similarity solutions for the one-dimensional Vlasov-Maxwell equations

The general Lie point transformation group and the associated reduced differential equations and similarity forms for the solutions are derived here for the coupled (nonlinear) Vlasov-Maxwell equations in one spatial dimension. The case of one species in a background is shown to admit a larger group than the multispecies case. Previous exact solutions are shown to be special cases of the above solutions, and many of the new solutions are found to constrain the form of the distribution function much more than, for example, the BGK solutions do. The individual generators of the Lie group are used to find the possible subgroups. Finally, a simple physical argument is given to show that the asymptotic solution for a one-species, one-dimensional plasma is one of the general similarity solutions.

Roberts, D.↗

Finite element (MARC) solution technologies for viscoplastic analyses

A need for development of realistic constitutive models for structural components operating at high temperatures, accompanied by appropriate solution technologies for stress/life analyses of these components is studied. Viscoplastic models provide a better description of inelastic behavior of materials, but their mathematical structure is very complex. The highly nonlinear and stiff nature of the constitutive equations makes analytical solutions difficult. Therefore, suitable solution, finite element or other numerical, technologies must be developed to make these models adaptable for better and rational designs of components. NASA-Lewis has developed several solution technologies and successfully applied them to the solution of a number of uniaxial and multiaxial problems. Some of these solution technologies are described along with the models and representative results. The solution technologies developed and presented encompass a wide range of models, such as, isotropic, anisotropic, metal matrix composites, and single crystal models.

Arya, V. K.↗

Analysis of earth rotation solution from Starlette

Earth rotation parameter (ERP) solutions were derived from the Starlette orbit analysis during the Main MERIT Campaign, using a technique of a consider-covariance analysis to assess the effects of errors on the polar motion solutions. The polar motion solution was then improved through the simultaneous adjustment of some dynamical parameters representing identified dominant perturbing sources (such as the geopotential and ocean-tide coefficients) on the polar motion solutions. Finally, an improved ERP solution was derived using the gravity field model, PTCF1, described by Tapley et al. (1986). The accuracy of the Starlette ERP solution was assessed by a comparison with the LAGEOS-derived ERP solutions.

Schutz, B. E.↗

Navier-Stokes solutions for an oscillating double-delta wing

An upwind-biased implicit scheme is used to investigate steady-state and unsteady Navier-Stokes solutions of the vortical flow over a double-delta wing configuration. The governing equations are solved numerically with a fully upwind, implicit, iterative, and factorized numerical scheme. Steady-state solutions for fixed angles of attack and unsteady solutions for a sinusoidal oscillatory motion are obtained. The steady-state solutions on the baseline grid are in agreement with the experiment, and grid refinements show some improvements of the predictions. The higher-order accuracy of the present scheme yields equivalent solutions on smaller grid densities compared to solutions obtained with a second-order accurate method on larger grids. As the angle of attack increases, the grid resolution requirements for adequate resolution of the leeward-side vortical flowfield become very severe. The unsteady solutions are in general agreement with the measurements and show a qualitative correlation with the experiment.

Ekaterinaris, John A.↗

Zonally-decoupled DSMC solutions of hypersonic blunt body wake flows

Direct simulation Monte Carlo (DSMC) solutions are presented for the hypersonic flow behind a blunt body in which the wake region is solved in a zonally-decoupled manner. The forebody flow is solved separately using either a DSMC or a Navier-Stokes method, and the forebody exit plane solution is specified as the inflow condition to the decoupled DSMC solution of the wake region. Results are presented for a 70-deg, blunted cone at flow conditions that can be accommodated in existing low-density wind tunnels with the Knudsen number based on base diameter ranging from 0.03 to 0.001. The zonally-decoupled solutions show good agreement with fully-coupled DSMC solutions of the wake flow densities and velocities. The wake closure predicted by the zonally-decoupled solutions is in better agreement with fully-coupled results than that predicted by a fully-coupled Navier-Stokes method indicating the need to account for rarefaction in the wake for the cases considered. The combined use of Navier-Stokes for the forebody with a decoupled DSMC solution for the wake provides an efficient method for solving transitional blunt-body flows where the forebody flow is continuum and the wake is rarefied.

Wilmoth, Richard G.↗

Comparison of TOPEX/Poseidon orbit determination solutions obtained by the Goddard Space Flight Center Flight Dynamics Division and Precision Orbit Determination Teams

Orbit determination results are obtained by the Goddard Space Flight Center (GSFC) Flight Dynamics Division (FDD) using the Goddard Trajectory Determination System (GTDS) and a real-time extended Kalman filter estimation system to process Tracking Data and Relay Satellite (TDRS) System (TDRSS) measurements in support of the Ocean Topography Experiment (TOPEX)/Poseidon spacecraft navigation and health and safety operations. GTDS is the operational orbit determination system used by the FDD, and the extended Kalman fliter was implemented in an analysis prototype system, the Real-Time Orbit Determination System/Enhanced (RTOD/E). The Precision Orbit Determination (POD) team within the GSFC Space Geodesy Branch generates an independent set of high-accuracy trajectories to support the TOPEX/Poseidon scientific data. These latter solutions use the Geodynamics (GEODYN) orbit determination system with laser ranging tracking data. The TOPEX/Poseidon trajectories were estimated for the October 22 - November 1, 1992, timeframe, for which the latest preliminary POD results were available. Independent assessments were made of the consistencies of solutions produced by the batch and sequential methods. The batch cases were assessed using overlap comparisons, while the sequential cases were assessed with covariances and the first measurement residuals. The batch least-squares and forward-filtered RTOD/E orbit solutions were compared with the definitive POD orbit solutions. The solution differences were generally less than 10 meters (m) for the batch least squares and less than 18 m for the sequential estimation solutions. The differences among the POD, GTDS, and RTOD/E solutions can be traced to differences in modeling and tracking data types, which are being analyzed in detail.

Doll, C.↗

Relationship Between Solution Shear Viscosity and Density at the Saturation Point

Properties of supersaturated solutions such as the density, viscosity, and solute diffusivity are dependent on the solute concentration. The diffusion-boundary-layer equations are derived and solved for the natural convection case with the viscosity and density dependent on the solute concentration. The solution obtained demonstrates that, at the vicinity of the saturation concentration c(sub s), there is a non-trivial dependence of the solution viscosity eta on its density rho: eta(c(sub s)) = eta(rho(sub s)) varies as rho(sub s)(exp 1/2), where rho(sub s) = rho(c(sub s)). This result has been verified in experiments with aqueous solutions of inorganic and organic salts.

Izmailov, Alexander F.↗

Some Finite Difference Solutions of the Laminar Compressible Boundary Layer Showing the Effects of Upstream Transpiration Cooling

Three numerical solutions of the partial differential equations describing the compressible laminar boundary layer are obtained by the finite difference method described in reports by I. Flugge-Lotz, D.C. Baxter, and this author. The solutions apply to steady-state supersonic flow without pressure gradient, over a cold wall and over an adiabatic wall, both having transpiration cooling upstream, and over an adiabatic wall with upstream cooling but without upstream transpiration. It is shown that for a given upstream wall temperature, upstream transpiration cooling affords much better protection to the adiabatic solid wall than does upstream cooling without transpiration. The results of the numerical solutions are compared with those of approximate solutions. The thermal results of the finite difference solution lie between the results of Rubesin and Inouye, and those of Libby and Pallone. When the skin-friction results of one finite difference solution are used in the thermal analysis of Rubesin and Inouye, improved agreement between the thermal results of the two methods of solution is obtained.

Howe, John T.↗

Effects of Convective Solute and Impurity Transport in Protein Crystal Growth

High-resolution optical interferometry was used to investigate the effects of forced solution convection on the crystal growth kinetics of the model protein lysozyme. Most experiments were conducted with 99.99% pure protein solutions. To study impurity effects, approx. 1% of lysozyme dimer (covalently bound) was added in some cases. We show that the unsteady kinetics, corresponding to bunching of growth steps, can be characterized by the Fourier components of time traces of the growth rate. Specific Fourier spectra are uniquely determined by the solution conditions (composition, temperature, and flow rate) and the growth layer source activity. We found that the average step velocity and growth rate increase by approx. I0% with increasing flow rate, as a result of the enhanced solute supply to the interface. More importantly, faster convective transport results in lower fluctuation amplitudes. This observation supports our rationale for system-dependent effects of transport on the structural perfection of protein crystals. We also found that solution flow rates greater than 500 microns/s result in stronger fluctuations while the average growth rate is decreased. This can lead to growth cessation at low supersaturations. With the intentionally contaminated solutions, these undesirable phenomena occurred at about half the flow rates required in pure solutions. Thus, we conclude that they are due to enhanced convective supply of impurities that are incorporated into the crystal during growth. Furthermore, we found that the impurity effects are reduced at higher crystal growth rates. Since the exposure time of terraces is inversely proportional to the growth rate, this observation suggests that the increased kinetics instability results from impurity adsorption on the interface. Finally, we provide evidence relating earlier observations of "slow protein crystal growth kinetics" to step bunch formation in response to nonsteady step generation.

Vekilov, Peter G.↗

A Spherical Earth Solution for TOA Lightning Location Retrieval

With the advent of high-speed digital computers, the method of chi square minimization is a highly practical means for analyzing a wide variety of (otherwise intractable) nonlinear inversion problems in applied mathematical physics. Little thought or effort is required to apply the chi square method to obtain quick and reasonable estimates of a solution, and the method offers a means to assess retrieval errors. Because the method is simple and practical it is sometimes hastily applied to problems that can be solved by formal analytic or quasi-analytic means. Presently, Global Atmospherics Inc. (GAI) finds the minimum of a chi square function to analyze time-of-arrival (TOA) and magnetic bearing data derived from the National Lightning Detection Network (NLDN); ellipsoidal Earth geometry is assumed. An analytic solution to this problem has not yet been attained, but the consideration and solving of less general problem statements might eventually lead to a final solution. In the present study, the problem of retrieving lightning ground-strike location on a spherical Earth surface using a network of 4 or more time-of-arrival (TOA) sensors is considered. It is shown that this problem has an analytic solution and therefore does not require the use of nonlinear estimation theory (such as the chi square method mentioned above). The mathematical robustness of the analytic solution is tested using computer-generated lightning sources and simulated TOA measurement errors. A quasi-analytic extension of the spherical Earth solution for an oblate spheroidal Earth geometry is considered in a related study. The incorporation of magnetic bearing information into these analytic solutions would lead to a general and elegant analytic retrieval scheme that would most likely replace the chi square estimation theory currently employed by Global Atmospherics Inc. (GAI).

Koshak, William J,↗

Applications of the Space-Time Conservation Element and Solution Element (CE/SE) Method to Computational Aeroacoustic Benchmark Problems

The Internal Propagation problems, Fan Noise problem, and Turbomachinery Noise problems are solved using the space-time conservation element and solution element (CE/SE) method. The problems in internal propagation problems address the propagation of sound waves through a nozzle. Both the nonlinear and linear quasi 1D Euler equations are solved. Numerical solutions are presented and compared with the analytical solution. The fan noise problem concerns the effect of the sweep angle on the acoustic field generated by the interaction of a convected gust with a cascade of 3D flat plates. A parallel version of the 3D CE/SE Euler solver is developed and employed to obtain numerical solutions for a family of swept flat plates. Numerical solutions for sweep angles of 0, 5, 10, and 15 deg are presented. The turbomachinery problems describe the interaction of a 2D vortical gust with a cascade of flat-plate airfoils with/without a downstream moving grid. The 2D nonlinear Euler Equations are solved and the converged numerical solutions are presented and compared with the corresponding analytical solution. All the comparisons demonstrate that the CE/SE method is capable of solving aeroacoustic problems with/without shock waves in a simple and efficient manner. Furthermore, the simple non-reflecting boundary condition used in the CE/SE method which is not based on the characteristic theory works very well in 1D, 2D and 3D problems.

Wang, Xiao-Yen↗

Solution Growth and Characterization of Single Crystals on Earth and in Microgravity

Crystal growth has been of interest to physicists and engineers for a long time because of their unique properties. Single crystals are utilized in such diverse applications as pharmaceuticals, computers, infrared detectors, frequency measurements, piezoelectric devices, a variety of high-technology devices, and sensors. Solution crystal growth is one of the important techniques to grow a variety of crystals when the material decomposes at the melting point and a suitable solvent is available to make a saturated solution at a desired temperature. In this Technical Memorandum (TM) an attempt is made to give the fundamentals of growing crystals from solution including improved designs of various crystallizers. Since the same solution crystal growth technique could not be used in microgravity, the authors proposed a new cooled-sting technique to grow crystals in space. The authors experience from conducting two Space Shuttle solution crystal growth experiments are also detailed in this TM and the complexity of solution growth experiments to grow crystals in space are also discussed. These happen to be some of the early experiments performed in space, and various lessons learned are described. A brief discussion of protein crystal growth that shares basic principles of the solution growth technique is given, along with some flight hardware information for growth in microgravity.

Aggarwal, M. D.↗

Growth and Characteristics of Bulk Single Crystals Grown from Solution on Earth and in Microgravity

The growth of crystals has been of interest to physicists and engineers for a long time because of their unique properties. Single crystals are utilized in such diverse applications as pharmaceuticals, computers, infrared detectors, frequency measurements, piezoelectric devices, a variety of high technology devices and sensors. Solution crystal growth is one of the important techniques to grow a variety of crystals when the material decomposes at the melting point and a suitable solvent is available to make a saturated solution at a desired temperature. In this chapter an attempt is made to give some fundamentals of growing crystals from solution including improved designs of various crystallizers. Since the same solution crystal growth technique could not be used in microgravity, authors had proposed a new cooled sting technique to grow crystals in space. Authors? experiences of conducting two space shuttle experiments relating to solution crystal growth are also detailed in this work. The complexity of these solution growth experiments to grow crystals in space are discussed. These happen to be some of the early experiments performed in space, and various lessons learned are described. A brief discussion of protein crystal growth that also shares basic principles of solution growth technique is given along with some flight hardware information for its growth in microgravity.

Aggarwal, M. D.↗

Combined Weekly Coordinate Solutions from SLR and DORIS

In International Terrestrial Reference Frame (ITRF) 2005 and ITRF2008, the approach for the construction of solutions by the IERS has been for individual analysis centers of each technique to process geodetic tracking data, and for each technique to develop a solution (or contribution) that is integrated into the final ITRF solution by careful combination of the technique solutions. The connections between the geodetic networks are realized by the application of local ties. In an alternate approach, we may assure processing homogeneity by creating normal equations for different techniques with the same orbit determination software, using identically derived algorithms. Another derivative of this approach is to realize the ties between the techniques using satellites tracked with multiple techniques; in effect tieing the networks together using satellite dynamics. In this solution, we develop a time series and a set of cumulative solutions from Satellite Laser Ranging (SLR) & Doppler Orbitography and Radio-positioning Integrated by Satellite (DORIS) based on homogeneous processing with the NASA GEODYN precise orbit determination suite of programs, where we jointly combine weekly the SLR data to Lageos1, Lageos2, Starlette, and Stella with the DORIS data from SPOT2-SPOT5, as well as satellites that utilize both techniques (TOPEX/Poseidon, Envisat, Jason-2). We discuss the modeling that is applied including upgrades implemented since the submission of the GSC ITRF2008 contributions for IDS. Firstly, we compare the SLR-only solutions comprising four geodetic satellites with the standard approach of utilizing only Lageos1 & Lageos2. Secondly, we evaluate the impact on the DORIS coordinates of the joint analysis with the SLR data.

Lemoine, F.↗

Comparison of DSMC and CFD Solutions of Fire II Including Radiative Heating

The ability to compute rarefied, ionized hypersonic flows is becoming more important as missions such as Earth reentry, landing high mass payloads on Mars, and the exploration of the outer planets and their satellites are being considered. These flows may also contain significant radiative heating. To prepare for these missions, NASA is developing the capability to simulate rarefied, ionized flows and to then calculate the resulting radiative heating to the vehicle's surface. In this study, the DSMC codes DAC and DS2V are used to obtain charge-neutral ionization solutions. NASA s direct simulation Monte Carlo code DAC is currently being updated to include the ability to simulate charge-neutral ionized flows, take advantage of the recently introduced Quantum-Kinetic chemistry model, and to include electronic energy levels as an additional internal energy mode. The Fire II flight test is used in this study to assess these new capabilities. The 1634 second data point was chosen for comparisons to be made in order to include comparisons to computational fluid dynamics solutions. The Knudsen number at this point in time is such that the DSMC simulations are still tractable and the CFD computations are at the edge of what is considered valid. It is shown that there can be quite a bit of variability in the vibrational temperature inferred from DSMC solutions and that, from how radiative heating is computed, the electronic temperature is much better suited for radiative calculations. To include the radiative portion of heating, the flow-field solutions are post-processed by the non-equilibrium radiation code HARA. Acceptable agreement between CFD and DSMC flow field solutions is demonstrated and the progress of the updates to DAC, along with an appropriate radiative heating solution, are discussed. In addition, future plans to generate more high fidelity radiative heat transfer solutions are discussed.

Liechty, Derek S.↗

Steady and Unsteady Nozzle Simulations Using the Conservation Element and Solution Element Method

This paper presents results from computational fluid dynamic (CFD) simulations of a three-stream plug nozzle. Time-accurate, Euler, quasi-1D and 2D-axisymmetric simulations were performed as part of an effort to provide a CFD-based approach to modeling nozzle dynamics. The CFD code used for the simulations is based on the space-time Conservation Element and Solution Element (CESE) method. Steady-state results were validated using the Wind-US code and a code utilizing the MacCormack method while the unsteady results were partially validated via an aeroacoustic benchmark problem. The CESE steady-state flow field solutions showed excellent agreement with solutions derived from the other methods and codes while preliminary unsteady results for the three-stream plug nozzle are also shown. Additionally, a study was performed to explore the sensitivity of gross thrust computations to the control surface definition. The results showed that most of the sensitivity while computing the gross thrust is attributed to the control surface stencil resolution and choice of stencil end points and not to the control surface definition itself.Finally, comparisons between the quasi-1D and 2D-axisymetric solutions were performed in order to gain insight on whether a quasi-1D solution can capture the steady and unsteady nozzle phenomena without the cost of a 2D-axisymmetric simulation. Initial results show that while the quasi-1D solutions are similar to the 2D-axisymmetric solutions, the inability of the quasi-1D simulations to predict two dimensional phenomena limits its accuracy.

Nozzle gross thrust calculations↗

Comparison of NACA 0012 Laminar Flow Solutions: Structured and Unstructured Grid Methods

In this paper we consider the solution of the compressible Navier-Stokes equations for a class of laminar airfoil flows. The principal objective of this paper is to demonstrate that members of this class of laminar flows have steady-state solutions. These laminar airfoil flow cases are often used to evaluate accuracy, stability and convergence of numerical solution algorithms for the Navier-Stokes equations. In recent years, such flows have also been used as test cases for high-order numerical schemes. While generally consistent steady-state solutions have been obtained for these flows using higher order schemes, a number of results have been published with various solutions, including unsteady ones. We demonstrate with two different numerical methods and a range of meshes with a maximum density that exceeds 8 × 106 grid points that steady-state solutions are obtained. Furthermore, numerical evidence is presented that even when solving the equations with an unsteady algorithm, one obtains steady-state solutions.

Swanson, R. C.↗