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At least 127 records · Page 7

OpenMSI Arrayed Analysis Toolkit: Analyzing Spatially Defined Samples Using Mass Spectrometry Imaging

Mass spectrometry imaging (MSI) has primarily been applied in localizing biomolecules within biological matrices. Although well-suited, the application of MSI for comparing thousands of spatially defined spotted samples has been limited. One reason for this is a lack of suitable and accessible data processing tools for the analysis of large arrayed MSI sample sets. In this paper, the OpenMSI Arrayed Analysis Toolkit (OMAAT) is a software package that addresses the challenges of analyzing spatially defined samples in MSI data sets. OMAAT is written in Python and is integrated with OpenMSI (http://openmsi.nersc.gov), a platform for storing, sharing, and analyzing MSI data. By using a web-based python notebook (Jupyter), OMAAT is accessible to anyone without programming experience yet allows experienced users to leverage all features. OMAAT was evaluated by analyzing an MSI data set of a high-throughput glycoside hydrolase activity screen comprising 384 samples arrayed onto a NIMS surface at a 450 μm spacing, decreasing analysis time >100-fold while maintaining robust spot-finding. The utility of OMAAT was demonstrated for screening metabolic activities of different sized soil particles, including hydrolysis of sugars, revealing a pattern of size dependent activities. Finally, these results introduce OMAAT as an effective toolkit for analyzing spatially defined samples in MSI. OMAAT runs on all major operating systems, and the source code can be obtained from the following GitHub repository: https://github.com/biorack/omaat.

47 OTHER INSTRUMENTATION↗

Conceptual moderator studies for the Spallation Neutron Source short-pulse second target station

Candidate moderator configurations for a short-pulse second target station (STS) at the Oak Ridge National Laboratory Spallation Neutron Source (SNS) have been identified using a global optimizer framework built around the MCNPX particle transport code. Neutron brightness metrics were selected as the figure-of-merit. We assumed that STS would use one out of six proton pulses produced by an SNS accelerator upgraded to operate at 1.3 GeV proton energy, 2.8 MW power and 60 Hz repetition rate. The simulations indicate that the peak brightness can be increased by a factor of 5 and 2.5 on a per proton pulse basis compared to the SNS first target station for both coupled and decoupled para-hydrogen moderators, respectively. Additional increases by factors of 3 and 2 were demonstrated for coupled and decoupled moderators, respectively, by reducing the area of neutron emission from 100 × 100 mm{sup 2} to 20 × 20 mm{sup 2}. This increase in brightness has the potential to translate to an increase of beam intensity at the instruments’ sample positions even though the total neutron emission of the smaller moderator is less than that of the larger. This is especially true for instruments with small samples (beam dimensions). The increased fluxes in the STS moderators come at accelerated poison and de-coupler burnout and higher radiation-induced material damage rates per unit power, which overall translate into lower moderator lifetimes. A first effort was undertaken to group decoupled moderators into a cluster collectively positioning them at the peak neutron production zone in the target and having a three-port neutron emission scheme that complements that of a cylindrical coupled moderator.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

Thermal scattering law of C 2 H 4 n : Integrating experimental data with DFT calculations

Improvements in determination of the thermal scattering law of moderator materials (measuring, calculating and validating) are important for accurate prediction of neutron thermalization in nuclear systems. In this paper a methodology for producing thermal scattering libraries from the experimental data for polyethylene C 2 H 4 n is discussed. Double differential scattering cross section (DDSCS) experiments were performed at the Spallation Neutron Source of Oak Ridge National Laboratory (SNS ORNL). New scattering kernel evaluations, based on phonon spectrum for C 2 H 4 n , are created using the NJOY2016 code. Two different methods were used: direct and indirect geometry neutron scattering at ARCS and SEQUOIA, and VISION instruments, respectively, where the phonon spectrum was derived from the dynamical structure factor S(Q, ω ) obtained from the measured DDSCS. In order to compare and validate the newly created library, the experimental setup was simulated using MCNP6.1. Compared with the current ENDF/B-VII.1, the resulting RPI C 2 H 4 n libraries improved both double differential scattering and total scattering cross sections. A set of criticality benchmarks containing C 2 H 4 n from HEU-MET-THERM resulted in an overall improved calculation of K eff , although the libraries should be tested against benchmarks more sensitive to C 2 H 4 n . The DFT + oClimax method is used and is shown to be most comprehensive method for analysis of moderator materials. Finally, the importance of DFT + oClimax method lies in the fact that it can be validated against all data measured at VISION, ARCS and SEQUOIA, and experimental total scattering cross section measurements.

74 ATOMIC AND MOLECULAR PHYSICS↗

The imaging of extra-galactic low-energy gamma-ray sources prospects, techniques, and instrumentation

Improved understanding of the nature of active galaxies will require detailed observations of 10 to 20 sources, while understanding of their gamma ray luminosity function and its evolution will require the detection of approximately 100 sources. Instruments capable of detecting 100 active galaxies at low-energy, gamma ray energies are achievable. The angular resolution of an instrument, as well as its sensitivity, can limit the number of sources it can observe. An investigation of the angular resolution requirements for future low-energy gamma ray instruments is presented. It was found that the strictest requirements arise not from the need to resolve detectable sources, but from the need to control the level of direction-to-direction fluctuations in the diffuse background level. It was concluded that gamma-ray instruments capable of detecting 100 active galaxies must have sub-degree angular resolution. The use of the coded aperture imaging technique is proposed as a method of achieving accurate control of systematic errors and fine angular resolution without unduly increasing the time needed to conduct full sky surveys. An analysis of coded aperture imaging is presented for instruments that employ masks based on hexagonal uniformly redundant arrays. An instrument, the gamma-ray imaging payload, was built that employs these imaging techniques. The design and testing of the instrument is described in detail. Preliminary results from a balloon flight of the instruments are shown, demonstrating its imaging performance.

Finger, Mark Harold↗

Calibration of the Large Area X-Ray Proportional Counter (LAXPC) Instrument on board AstroSat

We present the calibration and background model for the Large Area X-ray Proportional Counter (LAXPC) detectors on board AstroSat . The LAXPC instrument has three nominally identical detectors to achieve a large collecting area. These detectors are independent of each other, and in the event analysis mode they record the arrival time and energy of each photon that is detected. The detectors have a time resolution of 10 μ s and a dead-time of about 42 μ s. This makes LAXPC ideal for timing studies. The energy resolution and peak channel-to-energy mapping were obtained from calibration on the ground using radioactive sources coupled with GEANT4 simulations of the detectors. The response matrix was further refined from observations of the Crab after launch. At around 20 keV the energy resolution of the detectors is 10%–15%, while the combined effective area of the three detectors is about 6000 cm{sup 2}.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

Pixelated CZT Technology for the Detection, Identification, and Localization of Gamma-Ray Sources - 18311

Radioactive waste-management applications require good measurements to qualitatively and quantitatively characterize waste materials. Often these measurements must be done in situ, and the user wishes to learn something of the isotopic and spatial distribution of the source. Therefore, there is a need for a portable instrument that can map radioactive contamination and quantify sources. This presentation introduces several instruments that have been applied to this task, along with example measurements in relevant applications. All instruments are based on 3D-position-sensitive CdZnTe (CZT) detectors. This technology routinely achieves better than 1.1% FWHM energy resolution at 662 keV and operates at room temperature with a startup time under 2 minutes. All are packaged in portable enclosures with WiFi and Bluetooth capabilities for wireless communication. These capabilities allow the technology to be used in more advanced measurements in the field. A unique capability of these detectors is the ability to image the spatial distribution of gamma rays from a single stationary measurement. The first product, Polaris-H, has been in use at commercial nuclear power plants since 2013. The system, currently used at over 50% of the US nuclear-power fleet, integrates a 3D-position-sensitive CZT detector, associated readout electronics, an embedded computer, a battery with over 7-hour life, an optical camera, and a laser range finder in a portable water-proof enclosure. The system connects wirelessly to a tablet which displays a gamma-ray spectrum and isotope-specific images of the gamma-ray distribution in all directions in real time. The CZT detectors have a dynamic range from 50 keV up to 3 MeV. Coded aperture or pinhole imaging is used for energies below 250 keV, and Compton imaging is used for energies above 250 keV. List-mode data is saved to an external USB memory stick to enable more advanced analysis, including isotopic activity analysis, via H3D's post-processing software. Additional systems based on the same architecture have been developed to optimize the technology for other applications. These include Polaris-H Quad, which provides over 3 times the sensitivity for applications involving weaker sources, and Polaris-H Shield, which uses a collimator to provide images and isotope information over a narrower field of view in order to measure weaker sources in the presence of stronger sources of the same isotope. H3D has also developed custom systems that have been mounted on robots and drones that enable remote operation of the technology. Results from the measurements collected at commercial nuclear power plants and other applicable sites will be presented to show how these instruments can be used to detect, identify, and localize gamma-ray sources. Advanced analysis techniques to show the accurate quantification of the gamma-ray source will also be presented. Applications range from characterizing simple objects, to locating hottest points, estimating contamination distributions on an isotope-by-isotope basis, and differentiating scatter and direct emissions. (authors)

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗

Physics-electrical hybrid model for real time impedance matching and remote plasma characterization in RF plasma sources

Plasma characterization and impedance matching are an integral part of any radio frequency (RF) based plasma source. In long pulse operation, particularly in high power operation where plasma load may vary due to different reasons (e.g. pressure and power), online tuning of impedance matching circuit and remote plasma density estimation are very useful. In some cases, due to remote interfaces, radio activation and, due to maintenance issues, power probes are not allowed to be incorporated in the ion source design for plasma characterization. Therefore, for characterization and impedance matching, more remote schemes are envisaged. Two such schemes by the same authors are suggested in these regards, which are based on air core transformer model of inductive coupled plasma (ICP) [M. Bandyopadhyay et al., Nucl. Fusion 55, 033017 (2015); D. Sudhir et al., Rev. Sci. Instrum. 85, 013510 (2014)]. However, the influence of the RF field interaction with the plasma to determine its impedance, a physics code HELIC [D. Arnush, Phys. Plasmas 7, 3042 (2000)] is coupled with the transformer model. This model can be useful for both types of RF sources, i.e., ICP and helicon sources.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

Design and implementation of wireless dose logger network for radiological emergency decision support system

A decision support system (DSS) is implemented in Radiological Safety Division, Indira Gandhi Centre for Atomic Research for providing guidance for emergency decision making in case of an inadvertent nuclear accident. Real time gamma dose rate measurement around the stack is used for estimating the radioactive release rate (source term) by using inverse calculation. Wireless gamma dose logging network is designed, implemented, and installed around the Madras Atomic Power Station reactor stack to continuously acquire the environmental gamma dose rate and the details are presented in the paper. The network uses XBee–Pro wireless modules and PSoC controller for wireless interfacing, and the data are logged at the base station. A LabView based program is developed to receive the data, display it on the Google Map, plot the data over the time scale, and register the data in a file to share with DSS software. The DSS at the base station evaluates the real time source term to assess radiation impact.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

VERSE - Virtual Equivalent Real-time Simulation

Distributed real-time simulations provide important timing validation and hardware in the- loop results for the spacecraft flight software development cycle. Occasionally, the need for higher fidelity modeling and more comprehensive debugging capabilities - combined with a limited amount of computational resources - calls for a non real-time simulation environment that mimics the real-time environment. By creating a non real-time environment that accommodates simulations and flight software designed for a multi-CPU real-time system, we can save development time, cut mission costs, and reduce the likelihood of errors. This paper presents such a solution: Virtual Equivalent Real-time Simulation Environment (VERSE). VERSE turns the real-time operating system RTAI (Real-time Application Interface) into an event driven simulator that runs in virtual real time. Designed to keep the original RTAI architecture as intact as possible, and therefore inheriting RTAI's many capabilities, VERSE was implemented with remarkably little change to the RTAI source code. This small footprint together with use of the same API allows users to easily run the same application in both real-time and virtual time environments. VERSE has been used to build a workstation testbed for NASA's Space Interferometry Mission (SIM PlanetQuest) instrument flight software. With its flexible simulation controls and inexpensive setup and replication costs, VERSE will become an invaluable tool in future mission development.

virtual real time↗

Vicarious Calibration of GOCI for the SeaDAS Ocean Color Retrieval

A key on-orbit calibration step for satellite remote sensing of ocean color is the vicarious calibration. This establishes the final gains for each spectral band on the sensor that minimize bias in the retrieved ocean color signal. The vicarious calibration is specific to the instrument and the atmospheric correction algorithm. The vicarious calibration gains for the Geostationary Ocean Color Imager (GOCI) are presented here, which were derived to optimize the performance ofNASA's standard atmospheric correction algorithm as implemented in the l2gen code and distributed through the SeaDAS open-source software package. Following NASA's protocols, the near-infrared(NIR) bands were calibrated first, and the visible bands were then calibrated relative to this fixed NIR calibration. The gain for the 745-nm NIR band was derived using a fixed aerosol model, which waschosen based on the Angstrom Coefficients derived from MODIS onAqua (MODISA). For the vicarious gains of the visible bands, twosources for the target water-leaving radiances were tested: matchupsfrom MODISA and climatological data from SeaWiFS. A validation analysis using AERONET-OC data shows an improvement in sensor performance when compared with results using the current vicarious gains and results using no vicarious calibration. Good agreement was found in vicarious gains derived using both concurrent MODISA and climatological SeaWiFS as vicarious calibration data sources. These results support the use of a concurrent sensor for the vicarious calibration when in situ data are not available and demonstrate that using climatology from a well-calibrated sensor like SeaWiFSfor the vicarious calibration is a valid alternative when it is not possible to use a concurrent sensor or in situ data. We recommend using the gains derived from concurrent GOCI matchups with MODISA for GOCI processing in SeaDAS/l2gen.

Concha, Javier↗

Informative Path Planning for Mapping Radiation

This project involves making measurements of contaminated areas using portable radiation detectors and small robots. Tasks involve operating detectors and small robots, combining data acquisition for the two systems, and automating the systems. The end result is a radiation map of contamination areas. Localization of radioactive sources and mapping of contamination distribution is essential when responding to emergencies, or when dealing with cleanup efforts. Radiation maps are used for situational awareness and for establishing a safe perimeter. However, it may be hazardous or impossible for humans to safely enter the site and survey the area. Informative Path Planning (IPP) is used to design a path for a robotic sensor platform to gather the most information about the radiation distribution while operating under the set of constraints given by the dynamics of the robot and other requirements such as minimizing the overall mission time. The key challenge for IPP is the tight coupling in multiple layers of decisions: Selection of locations to visit; Allocation of sensors to those locations; Processing of information gathered. Given a robot equipped with a basic gamma detector and Lidar sensor, how can we efficiently explore an unknown environment in such a way that we can satisfy the robot's constraints while simultaneously maximizing the accuracy of the map and minimizing the total runtime? This work presents a systematic procedure for IPP and environmental mapping that: Selects the best locations at which to sample; Finds the best path for robots; Estimates the measurement value at unknown locations using a Gaussian Process regression framework. Given a set of points where radiation measurements were taken, we are utilizing a Gaussian Process Regression with a Matern kernel to reconstruct the shape of the underlying ground truth. Mapping is done via the Robot Operating System's OpenSlam Gmapping package, which creates a 2D occupancy grid map. Simulated trials were run with a radiation source placed at random locations, and allowing the robot to select and move towards 20 samples at separate locations, as well as sampling along the path while moving. The simulated sensor model assumed an efficiency of 0.3, collection time of 1 second. Various weighting schemes were tested and compared. Quantitative evaluations often favored exploitation-heavy weighting schemes where μ was emphasized, with the Root Mean Squared Error (RMSE) quickly tending towards 2, whereas qualitative comparisons would favor exploration-biased schemes with greater weight on σ. The difference comes from operators often favoring knowing the general location of a source, rather than the exact properties of a source. Weighting of the path-length π often reduced the quality of the regression as less exploration occurred, however this may be deemed a worthwhile trade-off under certain circumstances, such as with sensitive robots. Successfully developed a methodology for informative path-planning for a robot to efficiently gather information and create a map of radiation. In the future, we would like to focus on: Hardware trials with integration of the robot platform and the IPP software; More refined sensor and environmental modeling; Multiple robot platforms.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

DRiFT - Release 1.1.1: Organic Scintillators

DRiFT (a Detector Response Function Toolkit) is LANL-developed software that postprocesses output from the extensively validated radiation transport code, MCNP, and generates realistic nuclear instrumentation response. DRiFT is designed to be flexible, enabling users to specify detector type and many experimental settings, as well as accommodating the addition of their own desired features. Although DRiFT development has included scintillator, gas, and semiconductor features, the focus of this release is on organic scintillator and associated capabilities. Organic scintillators are widely used in the areas of nuclear safeguards and nuclear non-proliferation efforts. DRiFT has several diagnostic and detector physics features relevant to detailed scintillator simulations including: tracking source particle information, scintillation light production, the effects of PMT quantum efficiency and gain, and digitizer settings. Users can select responses from many scintillator and PMT types supported natively by DRiFT, or add their own by following the instructions in this document. We acknowledge that DRiFT is under active development, bug reports and general questions and comments should be directed to Madison Andrews, madison@lanl.gov. This manual is divided into four parts: I) An overview of DRiFT, including how to obtain and install the executable, II) A description of the detector physics related to scintillators available, III) a description of more general DRiFT features the user may find useful, and IV) a description of the test suite and examples made available with the code release.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

Applying Ada to Beech Starship avionics

As Ada solidified in its development, it became evident that it offered advantages for avionics systems because of it support for modern software engineering principles and real time applications. An Ada programming support environment was developed for two major avionics subsystems in the Beech Starship. The two subsystems include electronic flight instrument displays and the flight management computer system. Both of these systems use multiple Intel 80186 microprocessors. The flight management computer provides flight planning, navigation displays, primary flight display of checklists and other pilot advisory information. Together these systems represent nearly 80,000 lines of Ada source code and to date approximately 30 man years of effort. The Beech Starship avionics systems are in flight testing.

Funk, David W.↗

Towards automating structural discovery in scanning transmission electron microscopy *

Abstract Scanning transmission electron microscopy is now the primary tool for exploring functional materials on the atomic level. Often, features of interest are highly localized in specific regions in the material, such as ferroelectric domain walls, extended defects, or second phase inclusions. Selecting regions to image for structural and chemical discovery via atomically resolved imaging has traditionally proceeded via human operators making semi-informed judgements on sampling locations and parameters. Recent efforts at automation for structural and physical discovery have pointed towards the use of ‘active learning’ methods that utilize Bayesian optimization with surrogate models to quickly find relevant regions of interest. Yet despite the potential importance of this direction, there is a general lack of certainty in selecting relevant control algorithms and how to balance a priori knowledge of the material system with knowledge derived during experimentation. Here we address this gap by developing the automated experiment workflows with several combinations to both illustrate the effects of these choices and demonstrate the tradeoffs associated with each in terms of accuracy, robustness, and susceptibility to hyperparameters for structural discovery. We discuss possible methods to build descriptors using the raw image data and deep learning based semantic segmentation, as well as the implementation of variational autoencoder based representation. Furthermore, each workflow is applied to a range of feature sizes including NiO pillars within a La:SrMnO 3 matrix, ferroelectric domains in BiFeO 3 , and topological defects in graphene. The code developed in this manuscript is open sourced and will be released at github.com/nccreang/AE_Workflows .

47 OTHER INSTRUMENTATION↗

Charge breeders: Development of diagnostic tools to probe the underlying physics

Charge breeders were developed more than 20 years ago in the context of radioactive ion beam (RIB) production. The main goal is to boost the charge state of a singly charged RIB to a higher value matching the A/Q of a post-accelerator. In that way, the RIB produced at some tens of keV can efficiently be accelerated to energies in a range of few MeV/u up to several tens of MeV/u, which is of interest for nuclear structure and nuclear astrophysics experiments. Two families of charge breeders have been developed: one based on Electron Cyclotron Resonance Ion Sources (ECRISs) suitable for Continuous Wave (CW) operation and another built around Electron Beam Ion Sources (EBISs) used for pulsed post-accelerators. For many years, experimental studies have been carried out to enhance the charge breeding process and improve the extracted beam quality, i.e., purity, intensity, emittance, and time structure. The evolution of the charge breeders is also closely related to the emergence of new facilities delivering even more exotic beams. Diagnostic tools, such as Faraday cups, beam profile monitors, and emittance scanners, are mandatory to tune the machines and evaluate their performances. However, to go beyond that, a better understanding of plasma physics (in ECRIS) and electron-ion interactions (in EBIS), as well as the 1+ beam characteristics, for instance, energy spread transverse emittance, is needed. Therefore, simulation codes modeling the physics phenomena in both type of charge breeders were developed to support the understanding of experimental outputs and to gain insights into non-observable parameters. Nevertheless, more sophisticated diagnostic tools are required to improve the charge breeding performance and to extend the potential applications toward new RIB facilities. This Review will present the two kinds of charge breeders and their technical evolutions. It will review the diagnostic tools and simulation codes employed for operation and evaluation of the internal physics processes.

47 OTHER INSTRUMENTATION↗

Design and validation of a single-exposure passive neutron spectrometer (PNS) - 14417

This paper summarises the initial design and validation work of a novel neutron spectrometry technique based on gold foil activation at key locations within a single moderating polyethylene sphere. This Passive Neutron Spectrometer (PNS) consists of five removable columns which contain 52 gold foils in total, deployed over three axes. Response functions have been modeled using MCNP5, up to energies of 20 MeV. Validation irradiations have been performed at Valduc (on the Caliban assembly), the ASP 2.5 MeV source on site at AWE, and at the Low Scatter Facility at the National Physical Laboratory in Teddington (where both 565 keV monoenergetic and californium sources were used). Results indicate that the PNS is a viable neutron spectrometry technique. Unlike similar instruments (eg. Gomez-Ros), the PNS is designed to be directionally dependant with the aim of separately evaluating the scattered neutron component of an extended source. A great deal of work is required however to: first, confirm this application is feasible; and second, be able to develop it for use. As such, the scope of this paper is limited to validating the isotropic response for conventional measurement acquisition and unfolding using the PTB-written unfolding code, MAXED. Additional work to be conducted in the future includes an investigation into the inclusion of different activation foils, and irradiation by Godiva-IV at a point previously characterised by the AWE Bonner Sphere set, for comparison. (authors)

42 ENGINEERING↗

Extension of SCALE/Sampler’s sensitivity index for the assessment of cross section, fission yield, and decay data uncertainties

Accurate prediction of nuclide compositions and neutron and gamma sources and spectra for fresh and spent nuclear fuel through computational modeling and simulations is the basis for safeguards instruments design, optimization, and calibration, and for validation of the measured responses. The accuracy of these simulations can be significantly impacted by uncertainties in input parameters to the applied computer code. Input parameters are, for example, dimensions, material compositions, and temperatures of the model. Additionally, important but sometimes neglected input parameters for simulations of nuclear systems are the nuclear data that include nuclear reaction cross sections, fission product yields, and decay data. It has been shown that uncertainties of calculated results are dominated by uncertainties of these nuclear data.

11 NUCLEAR FUEL CYCLE AND FUEL MATERIALS↗

Characterizing scintillator detector response for correlated fission experiments with MCNP and associated packages

When multiple neutrons are emitted in a fission event they are correlated in both energy and their relative angle, which may impact the design of safeguards equipment and other instrumentation for non-proliferation applications. The most recent release of MCNP 6 . 2 contains the capability to simulate correlated fission neutrons using the event generators CGMF and FREYA . These radiation transport simulations will be post-processed by the detector response code, DRiFT , and compared directly to correlated fission measurements. DRiFT has been previously compared to single detector measurements, its capabilities have been recently expanded with correlated fission simulations in mind. Finally, this paper details updates to DRiFT specific to correlated fission measurements, including tracking source particle energy of all detector events (and non-events), expanded output formats, and digitizer waveform generation.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗