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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 127 records · Page 7

Convergent behavior of extended stalk regions from staphylococcal surface proteins with widely divergent sequence patterns

Staphylococcus epidermidis and Staphylococcus aureus are highly problematic bacteria in hospital settings. A major challenge is their ability to form biofilms on abiotic or biotic surfaces. Biofilms are well-organized, multicellular bacterial aggregates that resist antibiotic treatment and often lead to recurrent infections. Bacterial cell wall-anchored (CWA) proteins are important players in biofilm formation and infection. Many have putative stalk-like regions or regions of low complexity near the cell wall-anchoring motif. Recent work demonstrated the strong propensity of the stalk region of S. epidermidis accumulation-associated protein (Aap) to remain highly extended under solution conditions that typically induce compaction. This behavior is consistent with the expected function of a stalk-like region that is covalently attached to the cell wall peptidoglycan and projects the adhesive domains of Aap away from the cell surface. In this study, we evaluate whether the ability to resist compaction is a common theme among stalk regions from various staphylococcal CWA proteins. Circular dichroism spectroscopy was used to examine secondary structure changes as a function of temperature and cosolvents along with sedimentation velocity analytical ultracentrifugation, size-exclusion chromatography, and SAXS to characterize structural characteristics in solution. All stalk regions tested are intrinsically disordered, lacking secondary structure beyond random coil and polyproline type II helix, and they all sample highly extended conformations. Remarkably, the Ser-Asp dipeptide repeat region of SdrC exhibited nearly identical behavior in solution when compared to the Aap Pro/Gly-rich region, despite highly divergent sequence patterns, indicating conservation of function by various distinct staphylococcal CWA protein stalk regions.

59 BASIC BIOLOGICAL SCIENCES↗

Feature selection and information content of thematic mapper simulator data for a forested environment

Feature selection and the information content of Thematic Mapper Simulator (TMS) data are investigated for a forested region in northern Idaho. The optimal TMS channels for forest structural characteristics are determined, and the capability of TMS data to describe the structural variability within a forest stand is evaluated. The comparative performance of TMS and MSS data to discriminate forest structural factors using per-pixel maximum likelihood classification is examined, and four optimal TMS channels are classified in order to ascertain if the full complement of TM channels provide higher accuracies than the four optimal ones.

Spanner, M. A.↗

Data Mining of NASA Boeing 737 Flight Data: Frequency Analysis of In-Flight Recorded Data

Data recorded during flights of the NASA Trailblazer Boeing 737 have been analyzed to ascertain the presence of aircraft structural responses from various excitations such as the engine, aerodynamic effects, wind gusts, and control system operations. The NASA Trailblazer Boeing 737 was chosen as a focus of the study because of a large quantity of its flight data records. The goal of this study was to determine if any aircraft structural characteristics could be identified from flight data collected for measuring non-structural phenomena. A number of such data were examined for spatial and frequency correlation as a means of discovering hidden knowledge of the dynamic behavior of the aircraft. Data recorded from on-board dynamic sensors over a range of flight conditions showed consistently appearing frequencies. Those frequencies were attributed to aircraft structural vibrations.

Butterfield, Ansel J.↗

Repetitive proteins that undergo large conformational changes evade structural prediction algorithms

Protein structure prediction algorithms, such as AlphaFold, have accelerated protein design and advanced the understanding of the relationship between amino acid sequence and protein structure. However, these algorithms are limited in their ability to predict the structures of conformationally dynamic, intrinsically disordered, and stimuli-responsive proteins. To evaluate sequence-to-structure predictions of such challenging proteins, we explored a class of conformationally dynamic, repeats-in-toxin (RTX) proteins. RTX proteins adopt intrinsically disordered conformations in the absence of calcium and undergo reversible folding into β-roll structures upon binding to calcium. RTX proteins are characterized by tandem repeats of the sequence GGXGXDXUX, in which X can be any amino acid and U is an aliphatic amino acid. We designed RTX sequence variants with global substitutions of nonconserved amino acids, tandem repeats of consensus sequences GGAGXDTLY, and tandem repeats of scrambled sequences GGAGXDTYL. AlphaFold2 and AlphaFold3 predicted that all of these RTX variants adopt β-roll structures, characteristic of wild-type RTX bound to calcium. However, modeling the predicted structures with molecular dynamics simulations and characterizing the protein variants with circular dichroism spectroscopy, small-angle x-ray scattering, and x-ray crystallography revealed that variants adopt diverse, sequence-dependent structures in the absence and presence of calcium. To better design proteins for applications in biotechnology and sustainability, it is critical to build predictive tools that consider intrinsically disordered protein states and validate these tools with multi-mode, multi-scale experimental data.

Chang, Marina P. [Stanford Univ., CA (United State↗

Analysis of plant ABCB organic acid transporters (Final Report)

Functional Analysis and Genetic Manipulation of Plant ABCB Organic Ion Transporters- The project explores how ABC transporters export hydrophobic aromatics, identifies structural characteristics that regulate lateral positioning, and uses nanodisc technology to create platforms for structural studies of ABC plasma membrane transport proteins.

59 BASIC BIOLOGICAL SCIENCES↗

Overview of large space systems/propulsion interactions

Large space structure characteristics, antenna controller design, the attitude control system, mission grouping, propulsion system/large space structure interactions, structural mass impact for start transient effects, box truss multiple thrust point effects, and large space structure/propulsion issues are illustrated.

Carlisle, R. F.↗

Conceptual design for scaled truss antenna flight experiment

The conceptual design for a scaled truss antenna structures experiment program (STASEP) is presented. The hardware analysis of the scaled truss antenna structure (STAS) was performed by interactive design and evaluation of advanced spacecraft (IDEAS) computer aided, interactive, design and analysis program. Four STAS's were designed to be launched by the Shuttle, tested by using the space technology experiments platform (STEP) and space transportation system (STS), and then free flown in short lifetime orbits. Data were gathered on deployment, structural characteristics, geometric accuracies, thermal performance, and drag and lifetime as an orbiting spacecraft. Structural and thermal properties were determined for the STAS, including mass properties, thermal loading, structural natural frequencies, and mode shapes. The necessary analysis, scaling, and ground testing are discussed.

Lee, W. H.↗

Intermittent turbulence in solar wind from the south polar hole

The magnetic fields measured by the Ulysses spacecraft are used to study solar wind turbulence in the fast solar wind from the south polar hole. The spacecraft was at about 46 deg south latitude and 3.9 AU. For a magnetic field with a Gaussian distribution the power spectrum (second-order structure function) is sufficient to completely characterize the turbulence. However, the actual distribution is non-Gaussian so that the effects of intermittency must be taken into account. The observed spectral exponents include effects of intermittency and cannot be directly compared with the standard second-order spectral theories such as the Kolmogorov and Kraichnan theories. To permit a better comparison of the observations with the theoretical models, we study the structure characteristics of the data. We find the exponents of the second-order structure functions (power spectra) and the higher-order normalized structure functions for the components of the magnetic fields. We show that these sets of exponents can be approximately described by two basic numbers: the spectral exponent and the intermittency exponent. The intermittency exponent characterizes correlation properties of the energy cascade from large to small scales. Before comparing the observations to the theoretically expected values, a reduction must be made to the observed spectral exponent. The amount of the reduction depends on both the intermittency exponent and the model of the energy cascade assumed in the turbulence theory. We reduce the measured spectral indices according to a simple model for Alfven turbulence that is described here. We then compare our reduced spectral indices with second-order spectral theory. The reduced spectral indices for the period range of 1 min to about a half hour are remarkably constant and in good agreement with the value of 3/2. Thus our treatment is self-consistent. Our tentative conclusion is that the high-frequency turbulence appears to agree with the model of random-phased Alfven waves. This tentative conclusion must be tested by further theoretical and observational work.

Ruzmaikin, A. A.↗

Characterization of MoS 2 films via simultaneous grazing incidence X-ray diffraction and grazing incidence X-ray fluorescence (GIXRD/GIXRF)

Physical vapor deposited (PVD) molybdenum disulfide (nominal composition MoS 2 ) is employed as a thin film solid lubricant for extreme environments where liquid lubricants are not viable. The tribological properties of MoS 2 are highly dependent on morphological attributes such as film thickness, orientation, crystallinity, film density, and stoichiometry. These structural characteristics are controlled by tuning the PVD process parameters, yet undesirable alterations in the structure often occur due to process variations between deposition runs. Nondestructive film diagnostics can enable improved yield and serve as a means of tuning a deposition process, thus enabling quality control and materials exploration. Grazing incidence X-ray diffraction (GIXRD) for MoS 2 film characterization provides valuable information about film density and grain orientation (texture). However, the determination of film stoichiometry can only be indirectly inferred via GIXRD. The combination of density and microstructure via GIXRD with chemical composition via grazing incidence X-ray fluorescence (GIXRF) enables the isolation and decoupling of film density, composition, and microstructure and their ultimate impact on film layer thickness, thereby improving coating thickness predictions via X-ray fluorescence. We have augmented an existing GIXRD instrument with an additional X-ray detector for the simultaneous measurement of energy-dispersive X-ray fluorescence spectra during the GIXRD analysis. This combined GIXRD/GIXRF analysis has proven synergetic for correlating chemical composition to the structural aspects of MoS 2 films provided by GIXRD. We present the usefulness of the combined diagnostic technique via exemplar MoS 2 film samples and provide a discussion regarding data extraction techniques of grazing angle series measurements.

MoS2↗

Structural transitions in the GTP cap visualized by cryo-electron microscopy of catalytically inactive microtubules

Microtubules (MTs) are nonequilibrium polymers that switch between states of growth and shrinkage. This property is critical for their function and is a consequence of GTP hydrolysis in the MT. The structure of the stable GTP part of the MT (the GTP cap) has previously been inferred from MTs polymerized with nonhydrolyzable GTP analogs. Here, we report high-resolution structures of MTs truly containing GTP, polymerized from mutated, hydrolysis-deficient tubulins. We find that GTP-MTs have an “expanded lattice” and a “closed seam,” structural characteristics possibly responsible for stabilizing the GTP cap. These results provide insight into the structural transitions at growing MT ends, furthering our understanding of the bistable nature of MTs.

59 BASIC BIOLOGICAL SCIENCES↗

Solar Array Flight Experiment (SAFE)

The solar arrays flight experiment consists of four experiments on two different flights. The first experiment, termed the baseline, has a basic purpose to demonstrate the flight readiness of lightweight solar array technology for solar electric propulsion and other payload power applications. The early availability of this experiment and its basic large space structure characteristics make it a logical candidate to demonstrate other disciplines critical to large space structures. These demonstrations form the basis for three other solar array experiments, two in remote sensing and one in control. All of these experiments are briefly reviewed in this paper.

Schock, R. W.↗

Control pole placement relationships

Using a simplified Large Space Structure (LSS) model, a technique was developed which gives algebraic relationships for the unconstrained poles. The relationships, which were obtained by this technique, are functions of the structural characteristics and the control gains. Extremely interesting relationships evolve for the case when the structural damping is zero. If the damping is zero, the constrained poles are uncoupled from the structural mode shapes. These relationships, which are derived for structural damping and without structural damping, provide new insight into the migration of the unconstrained poles for the CFPPS.

Ainsworth, O. R.↗

A preliminary look at control augmented dynamic response of structures

The augmentation of structural characteristics, mass, damping, and stiffness through the use of control theory in lieu of structural redesign or augmentation was reported. The standard single-degree-of-freedom system was followed by a treatment of the same system using control augmentation. The system was extended to elastic structures using single and multisensor approaches and concludes with a brief discussion of potential application to large orbiting space structures.

Ryan, R. S.↗

A preliminary look at control augmented dynamic response of structures

This report deals with the augmentation of structural characteristics, mass, damping, and stiffness through the use of control theory in lieu of structural redesign or augmentation. Treated first is the standard single-degree-of-freedom system followed by a treatment of the same system using control augmentation. The system is extended to elastic structure using single and multisensor approaches and concludes with a brief discussion of potential application to large orbiting space structures.

Jewell, R. E.↗

Vibration of a large space beam under gravity effect

The structural characteristics of a large simply supported beam subjected to gravity are described. The nonlinear governing equations for both the static and the dynamic response are derived and solved analytically. The results show the feasibility of verifying the on-orbit dynamic characteristics of a large space beam by utilizing ground test data of such a structure. It is noted that the gravity effect interacts mostly with the first vibration mode. It was also found that the system of a large space beam subjected to its own weight is a hardening system. The differential equation for the asymmetric mode is a Duffing type equation. However, the governing equation for the symmetric mode has an additional quadratic term. It is this term that causes the maximum vibration amplitudes at different phases to be non-identical.

Shih, C.-F.↗

Structural investigation of protein kinase C inhibitors

The phospholipid and Ca2+ dependent protein kinase (PKC) plays an essential role in a variety of cellular events. Inhibition of PKC was shown to arrest growth in tumor cell cultures making it a target for possible antitumor therapy. Calphostins are potent inhibitors of PKC with high affinity for the enzyme regulatory site. Structural characteristics of calphostins, which confer the inhibitory activity, are investigated by comparing their optimized structures with the existing models for PKC activation. The resulting model of inhibitory activity assumes interaction with two out of the three electrostatic interaction sites postulated for activators. The model shows two sites of hydrophobic interaction and enables the inhibitory activity of gossypol to be accounted for.

NASA Discipline Exobiology↗

Conservation of Pax gene expression in ectodermal placodes of the lamprey

Ectodermal placodes contribute to the cranial ganglia and sense organs of the head and, together with neural crest cells, represent defining features of the vertebrate embryo. The identity of different placodes appears to be specified in part by the expression of different Pax genes, with Pax-3/7 class genes being expressed in the trigeminal placode of mice, chick, frogs and fish, and Pax-2/5/8 class genes expressed in the otic placode. Here, we present the cloning and expression pattern of lamprey Pax-7 and Pax-2, which mark the trigeminal and otic placodes, respectively, as well as other structures characteristic of vertebrate Pax genes. These results suggest conservation of Pax genes and placodal structures in basal and derived vertebrates.

NASA Discipline Evolutionary Biology↗

Release of the NASA Parallel Electric-Gas Architecture with Synergistic Utilization Scheme (PEGASUS) OpenVSP Model

The Open VSP model represents the geometry of PEGASUS as is currently modeled. PEGASUS is a concept vehicle that will not be physically produced. As such, the baseline model is subject to change without notice or requirement that updates are provided external to NASA. The current baseline is derived from the outer mold line (OML) of the ATR 42-500. As such, planform areas for the wing, fuselage, vertical tail, and horizontal tail mimic those published in public ATR 42 literature. NASA Aeronautics Systems Analysis Branch (ASAB) does not contain any proprietary data on the ATR 42, thus the PEGASUS model does not contain any proprietary or sensitive information. Further, model details that are required for an actual aircraft such as airfoils, twist distributions and propeller geometries are unknown at this time, and generic stand-ins are used within the OpenVSP model. The intent is to provide this model to Georgia Tech ASDL to allow the ASDL team to model the impact of the propulsion system at the wingtip’s impact on structural characteristics. The ASDL will be using the model to generate estimated aerodynamic load and structural members for analysis.

PEGASUS↗