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DOE OSTI2013

Contact detection acceleration in pebble flow simulation for pebble bed reactor systems

Pebble flow simulation plays an important role in the steady state and transient analysis of thermal-hydraulics and neutronics for Pebble Bed Reactors (PBR). The Discrete Element Method (DEM) and the modified Molecular Dynamics (MD) method are widely used to simulate the pebble motion to obtain the distribution of pebble concentration, velocity, and maximum contact stress. Although DEM and MD present high accuracy in the pebble flow simulation, they are quite computationally expensive due to the large quantity of pebbles to be simulated in a typical PBR and the ubiquitous contacts and collisions between neighboring pebbles that need to be detected frequently in the simulation, which greatly restricted their applicability for large scale PBR designs such as PBMR400. Since the contact detection accounts for more than 60% of the overall CPU time in the pebble flow simulation, the acceleration of the contact detection can greatly enhance the overall efficiency. In the present work, based on the design features of PBRs, two contact detection algorithms, the basic cell search algorithm and the bounding box search algorithm are investigated and applied to pebble contact detection. The influence from the PBR system size, core geometry and the searching cell size on the contact detection efficiency is presented. Our results suggest that for present PBR applications, the bounding box algorithm is less sensitive to the aforementioned effects and has superior performance in pebble contact detection compared with basic cell search algorithm. (authors)

21 SPECIFIC NUCLEAR REACTORS AND ASSOCIATED PLANTS↗

DOE OSTI2013

Final Report for "Community Petascale Project for Accelerator Science and Simulations"

This final report describes the work that has been accomplished over the past 5 years under the Community Petascale Project for Accelerator and Simulations (ComPASS) at Tech-X Corporation. Tech-X had been involved in the full range of ComPASS activities with simulation of laser plasma accelerator concepts, mainly in collaboration with LOASIS program at LBNL, simulation of coherent electron cooling in collaboration with BNL, modeling of electron clouds in high intensity accelerators, in collaboration with researchers at Fermilab and accurate modeling of superconducting RF cavity in collaboration with Fermilab, JLab and Cockcroft Institute in the UK.

43 PARTICLE ACCELERATORS↗

DOE OSTI2015

WarpVisit

WarpVisit is an insitu simulation application that integrates the Warp laser plasma accelerator simulation framework with Visit a parallel visualization application. WarpVisit is written in python and supports interactive or live mode where user can connect to Warp with the Visit GUI and batch mode for batch for non-interactive use on high-performance computing resources.

Loring, Burlen↗

DOE OSTI2022

Evaluation of Portable Programming Models to Accelerate LArTPC Detector Simulations

The Liquid Argon Time Projection Chamber (LArTPC) technology is widely used in high energy physics experiments, including the upcoming Deep Underground Neutrino Experiment (DUNE). Accurately simulating LArTPC detector responses is essential for analysis algorithm development and physics model interpretations. Accurate LArTPC detector response simulations are computationally demanding, and can become a bottleneck in the analysis workflow. Compute devices such as General-Purpose Graphics Processing Units (GPGPUs) have the potential to substantially accelerate simulations compared to traditional CPU-only processing. The software development that requires often carries the cost of specialized code refactorization and porting to match the target hardware architecture. With the rapid evolution and increased diversity of the computer architecture landscape, it is highly desirable to have a portable solution that also maintains reasonable performance. We report our ongoing effort in evaluating Kokkos as a basis for this portable programming model using LArTPC simulations in the context of the Wire-Cell Toolkit, a C++ library for LArTPC simulations, data analysis, reconstruction and visualization.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

DOE OSTI2021

Simulating Electron Impact Ionization using a General Particle Tracer (GPT) Custom Element

A new C++ custom element has been developed with the framework of General Particle Tracer (GPT) to simulate electron impact ionization of residual gas molecules. The custom element uses Monte-Carlo routines to determine both the ion production rate and the secondary electron kinetic energy based on user-defined gas densities and theoretical values for the ionization cross section and the secondary electron differential cross section. It then uses relativistic kinematics to track the secondary electron, the scattered electron, and the newly formed ion after ionization. The ion production rate and the secondary electron energy distribution determined by the custom element have been benchmarked against theoretical calculations and against simulations made using the simulation package IBSimu. While the custom element was originally built for particle accelerator simulations, it is readily extensible to other applications. The custom element will be described in detail and examples of applications at the Thomas Jefferson National Accelerator Facility will be presented for ion production in a DC high voltage photo-gun.

Yoskowitz, J. T.↗

DOE OSTI2019

An Overview of Recent Standard and Accelerated Molecular Dynamics Simulations of Helium Behavior in Tungsten

One of the most critical challenges for the successful adoption of nuclear fusion power corresponds to plasma-facing materials. Due to its favorable properties in this context (low sputtering yield, high thermal conductivity, high melting point, among others), tungsten is a leading candidate material. Nevertheless, tungsten is affected by the plasma and fusion byproducts. Irradiation by helium nuclei, in particular, strongly modifies the surface structure by a synergy of processes, whose origin is the nucleation and growth of helium bubbles. In this review, we present recent advances in the understanding of helium effects in tungsten from a simulational approach based on accelerated molecular dynamics, which emphasizes the use of realistic parameters, as are expected in experimental and operational fusion power conditions.

36 MATERIALS SCIENCE↗

DOE OSTI2022

Transient Relativistic Plasma Grating to Tailor High-Power Laser Fields, Wakefield Plasma Waves, and Electron Injection

In this work, we show the first experiment of a transverse laser interference for electron injection into the laser plasma accelerators. Simulations show such an injection is different from previous methods, as electrons are trapped into later acceleration buckets other than the leading ones. With optimal plasma tapering, the dephasing limit of such unprecedented electron beams could be potentially increased by an order of magnitude. In simulations, the interference drives a relativistic plasma grating, which triggers the splitting of relativistic-intensity laser pulses and wakefield. Consequently, spatially dual electron beams are accelerated, as also confirmed by the experiment.

43 PARTICLE ACCELERATORS↗

DOE OSTI2017

Nonlinear particle acceleration and thermal particles in GRB afterglows

The standard model for GRB afterglow emission treats the accelerated electron population as a simple power law, N(E)∝E{sup −p} for p≳2. However, in standard Fermi shock acceleration, a substantial fraction of the swept-up particles do not enter the acceleration process at all. Additionally, if acceleration is efficient, then the nonlinear back-reaction of accelerated particles on the shock structure modifies the shape of the nonthermal tail of the particle spectra. Both of these modifications to the standard synchrotron afterglow impact the luminosity, spectra, and temporal variation of the afterglow. To examine the effects of including thermal particles and nonlinear particle acceleration on afterglow emission, we follow a hydrodynamical model for an afterglow jet and simulate acceleration at numerous points during the evolution. When thermal particles are included, we find that the electron population is at no time well fitted by a single power law, though the highest-energy electrons are; if the acceleration is efficient, then the power-law region is even smaller. Our model predicts hard–soft–hard spectral evolution at X-ray energies, as well as an uncoupled X-ray and optical light curve. Additionally, we show that including emission from thermal particles has drastic effects (increases by factors of 100 and 30, respectively) on the observed flux at optical and GeV energies. This enhancement of GeV emission makes afterglow detections by future γ-ray observatories, such as CTA, very likely.

79 ASTRONOMY AND ASTROPHYSICS↗

DOE OSTI2024

Linear Solvers for Collector Systems of Generalized Large-scale Inverter-Based Resources

Collector systems for inverter-based resources (IBRs) are typically represented by equivalent circuits for electromagnetic transient (EMT) simulations. Recent studies have revealed that modeling a detailed collector system is essential to accurately represent the behavior of IBRs, especially when dealing with partial tripping during external disturbances. However, there are several challenges in simulating a detailed EMT model of a collector system due to the time required to simulate such systems. Thus, this paper investigates the modeling of a detailed collector system, taking into account its configuration and components as defined in IEEE standard 2800. The configurations include the collector systems of generalized large-scale IBR plants. The components include the main IBR transformer, collector bus, and feeders with lines and/or cables. The EMT model of the collector system is represented by differential algebraic equations (DAEs) that are discretized to form linear equations that are solved using linear solvers. In this paper, linear solvers are proposed based on the Schur complement method, which are utilized for simulation of the EMT model of collector systems of generalized large-scale IBRs to accelerate simulation speed while maintaining the accuracy of the results. The proposed solvers are verified by comparing the performance to that of linear solvers provided in MATLAB.

Choi, Jongchan↗

DOE OSTI2017

Numerical Simulations of Particle Acceleration at Interplanetary Quasi-perpendicular Shocks

Using test particle simulations we study particle acceleration at highly perpendicular (θ{sub Bn}⩾75{sup ∘}) shocks under conditions of modeling magnetic turbulence. We adopt a backward-in-time method to solve the Newton–Lorentz equation using the observed shock parameters for quasi-perpendicular interplanetary shocks, and compare the simulation results with ACE/EPAM observations to obtain the injection energy and timescale of particle acceleration. With our modeling and observations, we find that a large upstream speed is responsible for efficient particle acceleration. Our results also show that the quasi-perpendicular shocks are capable of accelerating thermal particles to high energies of the order of MeV for both kappa and Maxwellian upstream distributions, which may originate from the fact that in our model, the local background magnetic field has a component parallel to the shock normal.

79 ASTRONOMY AND ASTROPHYSICS↗

DOE OSTI2015

UCLA Final Technical Report for the "Community Petascale Project for Accelerator Science and Simulation”.

The UCLA Plasma Simulation Group is a major partner of the “Community Petascale Project for Accelerator Science and Simulation”. This is the final technical report. We include an overall summary, a list of publications, progress for the most recent year, and individual progress reports for each year. We have made tremendous progress during the three years. SciDAC funds have contributed to the development of a large number of skeleton codes that illustrate how to write PIC codes with a hierarchy of parallelism. These codes cover 2D and 3D as well as electrostatic solvers (which are used in beam dynamics codes and quasi-static codes) and electromagnetic solvers (which are used in plasma based accelerator codes). We also used these ideas to develop a GPU enabled version of OSIRIS. SciDAC funds were also contributed to the development of strategies to eliminate the Numerical Cerenkov Instability (NCI) which is an issue when carrying laser wakefield accelerator (LWFA) simulations in a boosted frame and when quantifying the emittance and energy spread of self-injected electron beams. This work included the development of a new code called UPIC-EMMA which is an FFT based electromagnetic PIC code and to new hybrid algorithms in OSIRIS. A new hybrid (PIC in r-z and gridless in φ) algorithm was implemented into OSIRIS. In this algorithm the fields and current are expanded into azimuthal harmonics and the complex amplitude for each harmonic is calculated separately. The contributions from each harmonic are summed and then used to push the particles. This algorithm permits modeling plasma based acceleration with some 3D effects but with the computational load of an 2D r-z PIC code. We developed a rigorously charge conserving current deposit for this algorithm. Very recently, we made progress in combining the speed up from the quasi-3D algorithm with that from the Lorentz boosted frame. SciDAC funds also contributed to the improvement and speed up of the quasi-static PIC code QuickPIC. We have also used our suite of PIC codes to make scientific discovery. Highlights include supporting FACET experiments which achieved the milestones of showing high beam loading and energy transfer efficiency from a drive electron beam to a witness electron beam and the discovery of a self-loading regime a for high gradient acceleration of a positron beam. Both of these experimental milestones were published in Nature together with supporting QuickPIC simulation results. Simulation results from QuickPIC were used on the cover of Nature in one case. We are also making progress on using highly resolved QuickPIC simulations to show that ion motion may not lead to catastrophic emittance growth for tightly focused electron bunches loaded into nonlinear wakefields. This could mean that fully self-consistent beam loading scenarios are possible. This work remains in progress. OSIRIS simulations were used to discover how 200 MeV electron rings are formed in LWFA experiments, on how to generate electrons that have a series of bunches on nanometer scale, and how to transport electron beams from (into) plasma sections into (from) conventional beam optic sections.

43 PARTICLE ACCELERATORS↗

DOE OSTI2015

SU-E-T-36: A GPU-Accelerated Monte-Carlo Dose Calculation Platform and Its Application Toward Validating a ViewRay Beam Model

Purpose: To build a fast, accurate and easily-deployable research platform for Monte-Carlo dose calculations. We port the dose calculation engine PENELOPE to C++, and accelerate calculations using GPU acceleration. Simulations of a Co-60 beam model provided by ViewRay demonstrate the capabilities of the platform. Methods: We built software that incorporates a beam model interface, CT-phantom model, GPU-accelerated PENELOPE engine, and GUI front-end. We rewrote the PENELOPE kernel in C++ (from Fortran) and accelerated the code on a GPU. We seamlessly integrated a Co-60 beam model (obtained from ViewRay) into our platform. Simulations of various field sizes and SSDs using a homogeneous water phantom generated PDDs, dose profiles, and output factors that were compared to experiment data. Results: With GPU acceleration using a dated graphics card (Nvidia Tesla C2050), a highly accurate simulation – including 100*100*100 grid, 3×3×3 mm3 voxels, <1% uncertainty, and 4.2×4.2 cm2 field size – runs 24 times faster (20 minutes versus 8 hours) than when parallelizing on 8 threads across a new CPU (Intel i7-4770). Simulated PDDs, profiles and output ratios for the commercial system agree well with experiment data measured using radiographic film or ionization chamber. Based on our analysis, this beam model is precise enough for general applications. Conclusions: Using a beam model for a Co-60 system provided by ViewRay, we evaluate a dose calculation platform that we developed. Comparison to measurements demonstrates the promise of our software for use as a research platform for dose calculations, with applications including quality assurance and treatment plan verification.

60 APPLIED LIFE SCIENCES↗

DOE OSTI2017

Determining Atomistic SAXS Models of Tri-Ubiquitin Chains from Bayesian Analysis of Accelerated Molecular Dynamics Simulations

Small-angle X-ray scattering (SAXS) has become an increasingly popular technique for characterizing the solution ensemble of flexible biomolecules. However, data resulting from SAXS is typically low-dimensional and is therefore difficult to interpret without additional structural knowledge. In theory, molecular dynamics (MD) trajectories can provide this information, but conventional simulations rarely sample the complete ensemble. Here, we demonstrate that accelerated MD simulations can be used to produce higher quality models in shorter time scales than standard simulations, and we present an iterative Bayesian Monte Carlo method that is able to identify multistate ensembles without overfitting. This methodology is applied to several ubiquitin trimers to demonstrate the effect of linkage type on the solution states of the signaling protein. Here, we observe that the linkage site directly affects the solution flexibility of the trimer and theorize that this difference in plasticity contributes to their disparate roles in vivo.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

DOE OSTI2019

Measurements of Decay and Snapback in Nb₃Sn Accelerator Magnets at Fermilab

In recent years, Fermilab has been executing an inten-sive R&D program on Nb₃Sn accelerator magnets. This program has included dipole and quadrupole models and demonstrators for various programs and projects, including the HL-LHC accelerator upgrade project. A systematic study of the field decay and snapback during the injection portion of a simulated accelerator cycle was executed at the Fermilab Magnet Test Facility. This paper summarizes the recent measurements of the MQXFS1 short quadrupole model and discusses the results of some previously measured Nb₃Sn magnets at CERN

43 PARTICLE ACCELERATORS↗

DOE OSTI2017

Accelerating gravitational microlensing simulations using the Xeon Phi coprocessor

Recently Graphics Processing Units (GPUs) have been used to speed up very CPU-intensive gravitational microlensing simulations. In this work, we use the Xeon Phi coprocessor to accelerate such simulations and compare its performance on a microlensing code with that of NVIDIA's GPUs. For the selected set of parameters evaluated in our experiment, we find that the speedup by Intel's Knights Corner coprocessor is comparable to that by NVIDIA's Fermi family of GPUs with compute capability 2.0, but less significant than GPUs with higher compute capabilities such as the Kepler. However, the very recently released second generation Xeon Phi, Knights Landing, is about 5.8 times faster than the Knights Corner, and about 2.9 times faster than the Kepler GPU used in our simulations. Here, we conclude that the Xeon Phi is a very promising alternative to GPUs for modern high performance microlensing simulations. LESS

79 ASTRONOMY AND ASTROPHYSICS↗

DOE OSTI2019

Performance Understanding and Analysis for Exascale Data Management Workflows

The goal of the Exascale Data Management Workflows project is to create tools to support techniques for in-situ data analysis and data management. Online data management co-running with simulations accelerates the scientific processes being carried out, provides rapid and timely scientific insights, and can help avoid unnecessary and scientifically invalid simulation computations, particularly when combined with or able to utilize data from experimental instrument and/or from past simulation runs. The University of Oregon team is contributing to the performance instrumentation and analysis aspect of this project. Our focus has been on efficient performance monitoring of data management at scale. The general approach of the MONA project is depicted in Figure 1 below. The figure shows performance monitoring applied to an I/O workflow associated with a scientific simulation, with online measurements captured from this workflow informing methods for workflow reconfiguration and dynamic adjustment. The goal is to maintain suitable levels of Quality of Service for workflow execution, by understanding the under lying causes of workflow performance and behavior. One outcome is workflow performance models able to characterize realistic workflows. Another outcome is performance ’mini-apps’ implementing such workflow behavior. Out of scope for this project are advanced methods for online workflow control.

97 MATHEMATICS AND COMPUTING↗

DOE OSTI2016

Stochastic averaging and sensitivity analysis for two scale reaction networks

In the presence of multiscale dynamics in a reaction network, direct simulation methods become inefficient as they can only advance the system on the smallest scale. This work presents stochastic averaging techniques to accelerate computations for obtaining estimates of expected values and sensitivities with respect to the steady state distribution. A two-time-scale formulation is used to establish bounds on the bias induced by the averaging method. Further, this formulation provides a framework to create an accelerated “averaged” version of most single-scale sensitivity estimation methods. In particular, we propose the use of a centered ergodic likelihood ratio method for steady state estimation and show how one can adapt it to accelerated simulations of multiscale systems. Lastly, we develop an adaptive “batch-means” stopping rule for determining when to terminate the micro-equilibration process.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

DOE OSTI2020

Coupling reduced‐order modeling and coarse‐grained CFD‐DEM to accelerate coal gasifier simulation and optimization

Abstract High fidelity three‐dimensional (3‐D) numerical simulations of commercial‐scale coal gasifiers are very time consuming and expensive. This article proposes a reduced‐order modeling approach that uses quasi one‐dimensional (1‐D) CFD–DEM simulation results to serve as an accurate initial condition for the 3‐D simulation, which significantly shortens the physical time from several hours to minutes to achieve steady states. The 3‐D simulation employs a previously validated coarse‐grained CFD‐DEM approach, which further accelerates the simulation. Both 1‐D and 3‐D simulations adopt a particle shrinkage scheme to correctly account for the particle volume change due to chemical reaction and thus provides an accurate bed height. Comparison with available experimental measurements of the bed temperature and synthesis gas composition is used to validate the simulation. The final syngas composition and flowrates are strongly affected by the fuel or gasification agent rate and process operating conditions as expected. This approach is then used to optimize two important operating conditions (air and steam flows) to achieve specific gasifier performance goals for the production of Fischer–Tropsch synthesis gas and production of fuel gas for gas turbines.

Yu, Jia↗