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121 records · Page 7

Genome assembly UWOPS 85-398.1-1

The yeast genus Torulaspora (subphylum Saccharomycotina, family Saccharomycetaceae) is mostly known from its type species T. delbrueckii, a frequent colonizer of wine and sourdough bread fermentations. The genus currently contains ten species that are typically found in various natural terrestrial environments in temperate and tropical climates. Here we employ taxogenomic analyses to investigate a large collection of Torulaspora strains obtained in multiple surveys we carried out in Asia, Australasia, North America, South America, and Europe, and to which we added several strains maintained in culture collections. Our analyses detected twelve novel species that are formally described here, thereby more than doubling the species diversity of Torulaspora. We also sketch a genotype-phenotype map for the genus and show how key genes have evolved in concert with the physiological traits they control. This dramatic increase in the number of species in the genus Torulaspora highlights how limited the current inventory of fungal taxa is. It also shows how integrated taxogenomics approaches can foster the assessment of species circumscriptions in fungi, especially when classical approaches relying on DNA barcode regions give inconclusive results.

Sampaio, Jose P. [UCIBIO, Departamento de Ciências↗

Genome assembly UFMG-CM Y6992

The yeast genus Torulaspora (subphylum Saccharomycotina, family Saccharomycetaceae) is mostly known from its type species T. delbrueckii, a frequent colonizer of wine and sourdough bread fermentations. The genus currently contains ten species that are typically found in various natural terrestrial environments in temperate and tropical climates. Here we employ taxogenomic analyses to investigate a large collection of Torulaspora strains obtained in multiple surveys we carried out in Asia, Australasia, North America, South America, and Europe, and to which we added several strains maintained in culture collections. Our analyses detected twelve novel species that are formally described here, thereby more than doubling the species diversity of Torulaspora. We also sketch a genotype-phenotype map for the genus and show how key genes have evolved in concert with the physiological traits they control. This dramatic increase in the number of species in the genus Torulaspora highlights how limited the current inventory of fungal taxa is. It also shows how integrated taxogenomics approaches can foster the assessment of species circumscriptions in fungi, especially when classical approaches relying on DNA barcode regions give inconclusive results.

Sampaio, Jose P. [UCIBIO, Departamento de Ciências↗

The influence of grain growth in circumstellar dust envelopes on observed colors and polarization of some eruptive stars

R CrB stars are classical examples of stars where dust envelope formation takes place. Dust envelope formation was detected around the Kuwano-Honda object (PU Vul) in 1980 to 1981 when the star's brightness fell to 8(sup m). Such envelopes are also formed at nova outbursts. The process of dust envelope formation leads to appreciable variations in optical characteristics, which are seen in specific color and polarization variations in the course of light fading and the appearance of IR radiation. It is shown that the model of a circumstellar dust envelope with aligned particles of changing size can be successfully applied to explain most phenomena observed at the time of light minima for a number of eruptive stars. The polarization may arise in a nonspherical dust envelope or be produced by alignment of nonspherical particles.

Efimov, Yu. S.↗

Collective neutrino oscillations on a quantum computer with hybrid quantum-classical algorithm

We simulate the time evolution of collective neutrino oscillations in two-flavor settings on a quantum computer. We explore the generalization of Trotter-Suzuki approximation to time-dependent Hamiltonian dynamics. The trotterization steps are further optimized using the Cartan decomposition of two-qubit unitary gates U ϵ SU(4) in the minimum number of controlled-NOT (CNOT) gates making the algorithm more resilient to the hardware noise. As a result, a more efficient hybrid quantum-classical algorithm is also explored to solve the problem on noisy intermediate-scale quantum devices.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Fast ion relaxation in ITER mediated by Alfvén instabilities

Abstract We address the critical issue for future burning plasmas of whether high-energy fusion products or auxiliary heating-beam ions will be confined for a sufficiently long time to compensate for thermal plasma energy losses. This issue can be mitigated by one of the most deleterious collective phenomena—the instability of low, sub-cyclotron frequency Alfvén eigenmodes (AEs), such as toroidicity-induced AEs and reversed-shear AEs in the ITER steady-state scenario. Using a revised quasi-linear (QL) theory applied to energetic particle (EP) relaxation in the presence of AEs, we find that the AE instabilities can affect both neutral beam ions and alpha particles, although the resulting fast ion transport is expected to be modest if classical particle slowing down is assumed. On the other hand, the QL theory predicts that the AE amplitudes will be enhanced by the background microturbulence, although this topic remains outside our scope due to the significant numerical effort required to evaluate these effects. We report our results for EP relaxation dynamics obtained utilizing several tools: (i) a comprehensive linear stability study of the sub-cyclotron Alfvénic spectrum as computed by ideal magnetohydrodynamic NOVA simulations for the AE eigenproblem, (ii) drift kinetic NOVA-C calculations for wave–particle interaction and AE growth/damping rates, and (iii) predictive QL modeling coupled with the global transport code TRANSP to assess the EP relaxation on the equilibrium timescale.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Synoptic Study of an X-Ray Nova in Outburst (ADP 2000)

In the completed work listed above, we present an X--ray spectral and timing analysis of 4131543-47 during its 2002 outburst based on 49 pointed observations obtained using the Rossi X-ray Timing Explorer (RXTE). The outburst reached a peak intensity of 4.2 Crab in the 2-12 keV band and declined by a factor of 32 throughout the month-long observation. A 21.9+/-0.6 mJy radio flare was detected at 1026.75 MHz two days before the X-ray maximum; the radio source was also detected late in the outburst, after the X-ray source entered the hard state. The X-ray light curve exhibits the classic shape of a rapid rise and an exponential decay. The spectrum is soft and dominated by emission from the accretion disk. The continuum is fit with a multicolor disk blackbody (kT-max = 1.04 keV) and a power-law (Gamma -2.7). Midway through the decay phase, a strong low-frequency quasi-periodic oscillation (QPO; nu = 7.3-8.1 Hz) was present for several days. The spectra feature a broad Fe K line that is asymmetric, suggesting that the line is due to relativistic broadening rather than Gomptonization. Relativistic Laor models provide much better fits to the line than non-relativistic Gaussian models, particularly near the beginning and end of our observations. The line fits yield estimates for the inner disk radius that are within 6 GM/c 2; this result and additional evidence indicates that this black hole may have a non-zero angular momentum. In current work, we are in the process of analyzing a huge set of RXTE data (-100 pointed observations) for H1743-322, which was in eruption throughout most of 2003. The source s behavior is remarkable. It displays all of the canonical X-ray states, sometimes in unusual ways. In this short report, we feature a single important result, namely, the detection of a pair of high-frequency QPOs. The bright flaring behavior is of special interest. During the flares the shape of the power spectrum and the presence of low-frequency QPOs indicate that the source is in the steep power-law (SPL or very high) state. It is in this state that the high-frequency QPOs, which are believed to emanate from the very inner accretion disk, were oberved. Specifically, we observe a 240 Hz QPO at a significance of 4.7sigma and a 162 Hz QPO at 3.7sigma. The higher frequency QPO was discovered by Homan et al. in an independent data set; they also found marginal evidence (2.5sigma)

McClintock, Jeffrey↗

Electromagnetic scattering theory

Electromagnetic scattering theory is discussed with emphasis on the general stochastic variational principle (SVP) and its applications. The stochastic version of the Schwinger-type variational principle is presented, and explicit expressions for its integrals are considered. Results are summarized for scalar wave scattering from a classic rough-surface model and for vector wave scattering from a random dielectric-body model. Also considered are the selection of trial functions and the variational improvement of the Kirchhoff short-wave approximation appropriate to large size-parameters. Other applications of vector field theory discussed include a general vision theory and the analysis of hydromagnetism induced by ocean motion across the geomagnetic field. Levitational force-torque in the magnetic suspension of the disturbance compensation system (DISCOS), now deployed in NOVA satellites, is also analyzed using the developed theory.

Bird, J. F.↗

Lithium in T Coronae Borealis

T Coronae Borealis is a recurrent, symbiotic nova system currently in quiescence between its periodic ≈80 yr cycle of eruptions. Observations during inter-outburst epochs provide an opportunity to study properties of the accretion disk and the M red giant. Here we present new irradiated (blackbody veiling) models, incorporating modern molecular opacities and line lists, of spectra derived from high-resolution (22,000 ≲ R ≲ 120,000) optical echelle observations obtained at two epochs, one prior to and one post the 2015 rebrightening event at similar spectroscopic system phase. We find a lithium abundance in the secondary at both epochs to be comparable. The non-irradiated (classical) model atmospheres yield a lithium abundance, A(Li) = 1.3 ± 0.1. The irradiated model (veiled) atmospheres, which are likely a better representation of the system in which the white dwarf and accretion disk illuminate the red giant, give A(Li) = 2.4 ± 0.1.

79 ASTRONOMY AND ASTROPHYSICS↗

Direct experimental constraints on the spatial extent of a neutrino wavepacket

Despite their high relative abundance in our Universe, neutrinos are the least understood fundamental particles of nature. In fact, the quantum properties of neutrinos emitted in experimentally relevant sources are theoretically contested and the spatial extent of the neutrino wavepacket is only loosely constrained by reactor neutrino oscillation data with a spread of 13 orders of magnitude. Here we present a method to directly access this quantity by precisely measuring the energy width of the recoil daughter nucleus emitted in the radioactive decay of beryllium-7. The final state in the decay process contains a recoiling lithium-7 nucleus, which is entangled with an electron neutrino at creation. The lithium-7 energy spectrum is measured to high precision by directly embedding beryllium-7 radioisotopes into a high-resolution superconducting tunnel junction that is operated as a cryogenic sensor. Under this approach, we set a lower limit on the Heisenberg spatial uncertainty of the recoil daughter of 6.2 pm, which implies that the final-state system is localized at a scale more than a thousand times larger than the nucleus itself. From this measurement, the first, to our knowledge, direct lower limit on the spatial extent of a neutrino wavepacket is extracted. These results may have implications in several areas including the theoretical understanding of neutrino properties, the nature of localization in weak nuclear decays and the interpretation of neutrino physics data.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Qutrit and qubit circuits for three-flavor collective neutrino oscillations

We explore the utility of qutrits and qubits for simulating the flavor dynamics of dense neutrino systems. The evolution of such systems impacts some important astrophysical processes, such as core-collapse supernovae and the nucleosynthesis of heavy nuclei. Many-body simulations require classical resources beyond current computing capabilities for physically relevant system sizes. Quantum computers are therefore a promising candidate to efficiently simulate the many-body dynamics of collective neutrino oscillations. Previous quantum simulation efforts have primarily focused on properties of the two-flavor approximation due to their direct mapping to qubits. Furthermore, we present new quantum circuits for simulating three-flavor neutrino systems on qutrit- and qubit-based platforms, and demonstrate their feasibility by simulating systems of two, four, and eight neutrinos on IBM and Quantinuum quantum computers.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Search for Magnetic Accretion in SW Sextantis Systems

SW Sextantis systems are nova-like cataclysmic variables that have unusual spectroscopic properties, which are thought to be caused by an accretion geometry having part of the mass flux trajectory out of the orbital plane. Accretion onto a magnetic white dwarf is one of the proposed scenarios for these systems. To verify this possibility, we analyzed photometric and polarimetric time-series data for a sample of six SW Sex stars. We report possible modulated circular polarization in BO Cet, SW Sex, and UU Aqr with periods of 11.1, 41.2, and 25.7 minutes, respectively, and less significant periodicities for V380 Oph at 22 minutes and V442 Oph at 19.4 minutes. We confirm previous results that LS Peg shows variable circular polarization. However, we determine a period of 18.8 minutes, which is different from the earlier reported value. We interpret these periods as the spin periods of the white dwarfs. Our polarimetric results indicate that 15% of the SW Sex systems have direct evidence of magnetic accretion. We also discuss SW Sex objects within the perspective of being magnetic systems, considering the latest findings about the demography, formation, and evolution of cataclysmic variables.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Recovery of 29 Second Oscillations in Hubble Space Telescope Eclipse Observations of the Cataclysmic Variable UX Ursae Majoris

Low-amplitude (approximately 0.5%) 29 s oscillations have been detected in Hubble Space Telescope Faint Object Spectrograph eclipse observations of the nova-like cataclysmic variable UX UMa. These are the same dwarf nova-type oscillations that were originally discovered in this system in 1972. The 29 s oscillations are seen in one pair of eclipse sequences obtained with the FOS/PRISM in 1994 November but not in a similar pair obtained with the FOS/GI60L grating in August of the same year. The oscillations in the PRISM data are sinusoidal to within the small observational errors and undergo an approximately - 360' phase shift during eclipses (i.e., one cycle is lost). The amplitudes are highest at pre-eclipse orbital phases and exhibit a rather gradual eclipse whose shape is roughly similar to, although perhaps slightly narrower than, LTX UMa's overall light curve in the PRISM bandpass (2000-8000 A). Spectra of the oscillations have been constructed from pre-, mid, and post-eclipse data segments of the November observations. The spectra obtained from the out-of-eclipse segments are extremely blue, and only lower limits can be placed on the temperature of the source that dominates the modulated flux at these orbital phases. Lower limits derived from blackbody (stellar atmosphere) model fits to these data are >or equal to 95,000 K (> or equal to 85,000 K); the corresponding upper limits on the projected area of this source are all less than 2% of the white dwarf (WD) surface area. By contrast, oscillation spectra derived from mid- eclipse data segments are much redder. Fits to these spectra yield temperature estimates in the range 20,000 K approximately greater T and T approximately less than 30,000 K for both blackbody and stellar atmosphere models and corresponding projected areas of a few percent of the WD surface area. These estimates are subject to revision if the modulated emission is optically thin. We suggest that the ultimate source of the oscillations is a hot, compact region near disk center, but that a significant fraction of the observed, modulated flux is due to reprocessing of the light emitted by this source in the accretion disk atmosphere. The compact source is occulted at orbital phases near mid-eclipse, leaving only part of the more extended reprocessing region(s) to produce the weak oscillations that persist even at conjunction. The highly sinusoidal oscillation pulse shape does not permit the identification of the compact comonent in this model with emission produced by a rotating disturbance in the inner disk or in a classical, equatorial boundary layer. Instead, this component could arise in a bright spot on the surface of the WD, possibly associated with a magnetic pole. However, a standard intermediate polar model can also be ruled out since UX UMa's oscillation period has been seen to change on timescales much shorter than the minimum timescale required to spin up the WD by accretion torques. A model invoking magnetically controlled accretion onto differentially rotating WD surface layers may be viable, but needs more theoretical work.

Knigge, Christian↗

Dual-Baseline Search for Active-to-Sterile Neutrino Oscillations in NOvA

We report a search for neutrino oscillations to sterile neutrinos under a model with three active and one sterile neutrinos (3+1 model). This analysis uses the NOvA detectors exposed to the NuMI beam, running in neutrino mode. The data exposure, 13.6 × 10 20 protons on target, doubles that previously analyzed by NOvA, and the analysis is the first to use 𝜈 𝜇 charged-current interactions in conjunction with neutral-current interactions. Neutrino samples in the near and far detectors are fitted simultaneously, enabling the search to be carried out over a Δ⁢𝑚$^{2}_{41}$ range extending 2 (3) orders of magnitude above (below) 1 eV 2 . NOvA finds no evidence for active-to-sterile neutrino oscillations under the 3+1 model at 90% confidence level. New limits are reported in multiple regions of parameter space, excluding some regions currently allowed by IceCube at 90% confidence level. We additionally set the most stringent limits for anomalous 𝜈 𝜏 appearance for Δ⁢𝑚$^{2}_{41}$ ≤ 3 eV 2 .

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗