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Results for “collision cross section”

Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 127 records · Page 7
All sourcesNASA NTRSDOE OSTI
DOE OSTI2021

DEIMoS: An Open-Source Tool for Processing High-Dimensional Mass Spectrometry Data

We present DEIMoS: Data Extraction for Integrated Multidimensional Spectrometry, a Python application programming interface and command-line tool for high-dimensional mass spectrometry data analysis workflows, offering ease of development and access to efficient algorithmic implementations. Functionality includes feature detection, feature alignment, collision cross section calibration, isotope detection, and MS/MS spectral deconvolution, with the output comprising detected features aligned across study samples and characterized by mass, CCS, tandem mass spectra, and isotopic signature. Notably, DEIMoS operates on N-dimensional data, largely agnostic to acquisition instrumentation: algorithm implementations utilize all dimensions simultaneously to (i) offer greater separation between features, improving detection sensitivity, (ii) increase alignment/feature matching confidence among datasets, and (iii) mitigate convolution artifacts in tandem mass spectra. We demonstrate DEIMoS with LC-IMS-MS/MS data, demonstrating the advantages of a multidimensional approach in each data processing step.

Colby, Sean M↗
DOE OSTI2021

Optical Microscopy-Guided Laser Ablation Electrospray Ionization Ion Mobility Mass Spectrometry: Ambient Single Cell Metabolomics with Increased Confidence in Molecular Identification

Single cell analysis is a field of increasing interest as new tools are continually being developed to understand intercellular differences within large cell populations. Laser-ablation electrospray ionization mass spectrometry (LAESI-MS) is an emerging technique for single cell metabolomics. Over the years, it has been validated that this ionization technique is advantageous for probing the molecular content of individual cells in situ. Here, we report the integration of a microscope into the optical train of the LAESI source to allow for visually informed ambient in situ single cell analysis. Additionally, we have coupled this ‘LAESI microscope’ to a drift-tube ion mobility mass spectrometer to enable separation of isobaric species and allow for the determination of ion collision cross sections in conjunction with accurate mass measurements. This combined information helps provide higher confidence for structural assignment of molecules ablated from single cells. Here, we show that this system enables the analysis of the metabolite content of Allium cepa epidermal cells with high confidence structural identification together with their spatial locations within a tissue.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2023

Similarity Downselection: Finding the n Most Dissimilar Molecular Conformers for Reference-Free Metabolomics

Computational methods for creating in silico libraries of molecular descriptors (e.g., collision cross sections) are becoming increasingly prevalent due to the limited number of authentic reference materials available for traditional library building. These so-called “reference-free metabolomics” methods require sampling sets of molecular conformers in order to produce high accuracy property predictions. Due to the computational cost of the subsequent calculations for each conformer, there is a need to sample the most relevant subset and avoid repeating calculations on conformers that are nearly identical. The goal of this study is to introduce a heuristic method of finding the most dissimilar conformers from a larger population in order to help speed up reference-free calculation methods and maintain a high property prediction accuracy. Finding the set of the n items most dissimilar from each other out of a larger population becomes increasingly difficult and computationally expensive as either n or the population size grows large. Because there exists a pairwise relationship between each item and all other items in the population, finding the set of the n most dissimilar items is different than simply sorting an array of numbers. For instance, if you have a set of the most dissimilar n = 4 items, one or more of the items from n = 4 might not be in the set n = 5. An exact solution would have to search all possible combinations of size n in the population exhaustively. We present an open-source software called similarity downselection (SDS), written in Python and freely available on GitHub. SDS implements a heuristic algorithm for quickly finding the approximate set(s) of the n most dissimilar items. We benchmark SDS against a Monte Carlo method, which attempts to find the exact solution through repeated random sampling. We show that for SDS to find the set of n most dissimilar conformers, our method is not only orders of magnitude faster, but it is also more accurate than running Monte Carlo for 1,000,000 iterations, each searching for set sizes n = 3–7 out of a population of 50,000. We also benchmark SDS against the exact solution for example small populations, showing that SDS produces a solution close to the exact solution in these instances. Using theoretical approaches, we also demonstrate the constraints of the greedy algorithm and its efficacy as a ratio to the exact solution.

97 MATHEMATICS AND COMPUTING↗
NASA NTRS1971

Infrared laboratory studies of synthetic planetary atmospheres

The broadening of individual lines in the CO fundamental by various gases has been investigated. The results indicate that the ratio of the self-broadening ability of CO to the line-broadening ability of foreign gases is greater for lines in the band wings than for lines near the band center when the molecular mass of the broadener is less than that of CO. The results have been interpreted in terms of a phenomenological theory. Studies of the relative line broadening abilities of foreign gases have provided information that can be used to provide optical collision cross sections for individual lines in the CO fundamental.

Williams, D.↗
NASA NTRS1972

Broadening of infrared absorption lines at reduced temperatures - Carbon dioxide.

An evacuated high-resolution Czerny-Turner spectrograph, which is described in this paper, has been used to determine the strengths S and self-broadening parameters for lines in the R branch of the nu (sub 3) fundamental of carbon dioxide at 298 and at 207 K. The values of self-broadening parameters at 207 K are greater than those to be expected on the basis of a fixed collision cross section.

Tubbs, L. D.↗
NASA NTRS1972

Foreign-gas broadening of nitrous oxide absorption lines.

We have measured the foreign-gas broadening coefficients for collisional broadening of lines in the nu-3 fundamental of N2O by He, Ne, Ar, Kr, Xe, H2, D2, and CH4. These coefficients, which give the ratio of the line-broadening ability of these gases to the line-broadening ability of N2, can be used with recent measurements and calculations of N2 broadening to obtain optical collision cross sections.

Tubbs, L. D.↗
NASA NTRS1974

Infrared laboratory studies of synthetic planetary atmospheres

Research involving a test of multiplicative transmittance for mixed absorbing gases when their lines are broadened by H2 and He, which are constituents of the atmospheres of the major planets was conducted. The results indicate that the multiplicative law as originally formulated can be applied with confidence. The broadening of individual lines in the CO fundamental by various gases has been investigated. The results indicate that the ratio of the self-broadening ability of CO to the line-broadening ability of foreign gases is greater for lines in the band wings than for lines near the band center when the molecular mass of the broadener is less than that of CO. The results have been interpreted in terms of a phenomenological theory. Studies of the relative line broadening abilities of foreign gases have provided information that can be used to provide optical collision cross sections for individual lines in the CO fundamental.

Williams, D.↗
NASA NTRS1974

A model for accretion of the terrestrial planets

One possible origin of the terrestrial planets involves their formation by gravitational accretion of particles originally in Keplerian orbits about the sun. Some implications of this theory are considered. A formal expression for the rate of mass accretion by a planet is developed. The formal singularity of the gravitational collision cross section for low relative velocities is shown to be without physical significance when the accreting bodies are in heliocentric orbits. The distribution of particle velocities relative to an accreting planet is considered; the mean velocity increases with time. The internal temperature of an accreting planet is shown to depend simply on the accretion rate. A simple and physically reasonable approximate expression for a planetary accretion rate is proposed.

Weidenschilling, S. J.↗
NASA NTRS1975

Molecular spectroscopy and collisional excitation

The paper examines the basic principles underlying the molecular transitions responsible for interstellar molecular spectra. The energy levels of molecules are discussed in detail with special attention given to the Born-Oppenheimer approximation, the electronic Hamiltonian, and the parameters of vibrational and rotational energy. The probabilities for radiative and collisional transitions are calculated. A brief review of techniques for molecular spectroscopy is presented along with methods used to determine collision cross sections on both an experimental and a theoretical basis.

Green, S.↗
NASA NTRS1978

Some effects of ablation on transport properties in the Jovian atmosphere

In this paper the transport properties at the inner and outer boundary for mixing between ablation products and a Jovian-like atmosphere are calculated. The dominant species at these boundaries are C, H, O, He, H+, and e. Accurate potential energy curves are obtained for the fifteen possible two-body interactions among these species by fitting good semiempirical potentials for which transport collision cross sections have been tabulated to accurate experimental and theoretical information. Results are obtained for the viscosity and translational thermal conductivity of the pure species and the binary diffusion coefficients from 1000 K to 25,000 K. In addition, the mixture translational thermal conductivity and viscosity are calculated at the inner and outer mixing boundaries. This information is required for calculating flowfield properties and surface heating. The most important conclusion is that the translational thermal conductivity is substantially lower at the inner mixing boundary than it is at the outer mixing boundary.

Biolsi, L.↗
NASA NTRS1979

Z1/3/ contribution to the energy loss of heavy charged particles

The Z1(3) contribution of distant collisions to the average energy loss of heavy charged particles is obtained by extending Bethe's quantum-mechanical calculation to the next highest order in Z1. The second-order Born approximation for the inelastic-collision cross section is simplified by using two major approximations. The infinite summation over terms arising from the coupling to intermediate states of the target atom is approximated with the aid of a parameter and the closure relation. This parameter is proportional to the average excitation energy of the intermediate states as described in the literature. The atomic form factors are simplified through a dipole expansion. Results are obtained in terms of an average excitation energy of the medium. Exemplary results for stopping in Al are presented for estimated values of the average excitation energy of the intermediate states. These results approach the classical and experimental values as the velocity of the penetrating particle increases, agreeing within 20% at beta = 0.3.

Morgan, S. H., Jr.↗
NASA NTRS1980

Collisional narrowing by polyatomic buffer gases in an optically pumped CH3F laser

The gain linewidth of an optically pumped CH3F molecular laser is observed with the addition of various polyatomic buffer gases. This is interpreted as collisional (Dicke) narrowing. The measurement is the first observation of collisional narrowing by polyatomic buffer gases. It is also the first observation of the effect in a laser oscillator. The effect was observed using a heterodyne mixing technique at the laser emission frequency of 604 GHz. Collision cross sections for SF6-CH3F and CS2-CH3F are obtained.

Lawandy, N. M.↗