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121 records · Page 7
All sourcesNASA NTRSDOE OSTI
NASA NTRSDate not supplied

FATE: The drifting Fish Aggregating Device (dFAD) TrajEctory Modeling Tool for Marine Protected Area Management

Drifting fish aggregating devices (dFADs) routinely enter marine protected areas (MPAs) and may undermine MPA protections by drifting out of the MPA with the aggregated fish biomass, or grounding and damaging sensitive coral reef habitats. MPA managers must decide whether to deploy resources in response to dFAD intrusions. To address this issue, we propose to quantify dFAD activity in relation to ocean currents, fish biomass, and animal telemetry at Palmyra Atoll, part of the Pacific Remote Islands Marine National Monument in the central Pacific Ocean. Specifically, we propose to develop the dFAD TrajEctory Tool (FATE). FATE is an innovative decision support tool that will use NASA observations and numerical models to predict future dFAD trajectories and inform TNC and USFWS whether they should deploy tactical resources (boats, personnel) to monitor, intercept, or retrieve dFADs that have entered the Refuge. The objectives are to use NASA observational constraints on ocean winds and currents to assist with the ecological management of the Palmyra Atoll NWR and MPA. Specifically, we will deliver an operational software tool that quantifies the grounding risk associated with each tracked dFAD and decision support for grounding risk mitigation via intercept at sea. This project addresses Element 3.3: Protected area management of the 2022 Ecological Conservation Solicitation by developing a tool needed by MPA managers to make tactical and strategic decisions focused on improving the effectiveness of MPAs. By quantifying the riskof dFADs, this project will help monitor and better inform the deployment of tactical (ships/personnel) and strategic (legislative) resources to better manage MPAs. This project is a collaboration between The Nature Conservancy, who operate long-term projects within the Palmyra MPA, and the U.S. Fish and Wildlife Service, who have the authority to make decisions related to its management. We expect that the results of our proposal will benefit marine resources within the Palmyra MPA and could be transferred to other remote MPAs within the US and other island nations within the Pacific Ocean.

TrajEctory↗
DOE OSTI2022

Coral and Seawater Metagenomes Reveal Key Microbial Functions to Coral Health and Ecosystem Functioning Shaped at Reef Scale

The coral holobiont is comprised of a highly diverse microbial community that provides key services to corals such as protection against pathogens and nutrient cycling. The coral surface mucus layer (SML) microbiome is very sensitive to external changes, as it constitutes the direct interface between the coral host and the environment. Here, we investigate whether the bacterial taxonomic and functional profiles in the coral SML are shaped by the local reef zone and explore their role in coral health and ecosystem functioning. The analysis was conducted using metagenomes and metagenome-assembled genomes (MAGs) associated with the coral Pseudodiploria strigosa and the water column from two naturally distinct reef environments in Bermuda: inner patch reefs exposed to a fluctuating thermal regime and the more stable outer reefs. The microbial community structure in the coral SML varied according to the local environment, both at taxonomic and functional levels. The coral SML microbiome from inner reefs provides more gene functions that are involved in nutrient cycling (e.g., photosynthesis, phosphorus metabolism, sulfur assimilation) and those that are related to higher levels of microbial activity, competition, and stress response. In contrast, the coral SML microbiome from outer reefs contained genes indicative of a carbohydrate-rich mucus composition found in corals exposed to less stressful temperatures and showed high proportions of microbial gene functions that play a potential role in coral disease, such as degradation of lignin-derived compounds and sulfur oxidation. The fluctuating environment in the inner patch reefs of Bermuda could be driving a more beneficial coral SML microbiome, potentially increasing holobiont resilience to environmental changes and disease.

59 BASIC BIOLOGICAL SCIENCES↗
NASA NTRS1997

JOVE Program

Coastal reef degradation and widespread bleaching of corals, i.e. loss of pigments and/or symbiotic zooxanthellae, is increasing globally. Remote sensing has great potential for assessing the extent of reef change. However, measuring reef change from remote platforms (boats, aircraft or satellites), requires ground-truth spectral algorithms characteristic of healthy and degraded reef populations. Our laboratory experiments demonstrated, for the first time, that healthy coral colonies emit characteristic fluorescence spectra in response to excitation with short wavelength (blue or ultraviolet) light. Furthermore, following stress, e.g. increased temperature, corals lose symbiotic algae and their health is compromised. We measured changes in coral fluorescence spectra along with pigment loss in response to temperature-induced stress. Following laboratory demonstration, we tested this approach in the field. The NASA P3 aircraft with the airborne oceanographic LIDAR system was used to map transects of coral reef in Hawaii. Ground truth samples of coral; were collected and analyzed for pigment density (pigments/surface area). Fluorescence spectra along transects showed consistent chlorophyll fluorescence peaks at 685 nm from the chlorophyll of the zooxanthellae and peaks between 400 and 570 nm believed to emanate from the coral tissue. Our results suggest that remote sensing of laser-induced fluorescence represents an efficient and effective approach to monitoring the health of coral reefs. Lists of papers, conferences, proposals awarded and a summary of student involvement is included in the appendices.

Hardy, John T.↗
DOE OSTI2022

Biochemical and spectroscopic characterizations of the oligomeric antenna of the coral symbiotic Symbiodiniaceae Fugacium kawagutii

Light-harvesting antennas in photosynthesis capture light energy and transfer it to the reaction centers (RCs) where photochemistry takes place. The sustainable growth of the reef-building corals relies on a constant supply of the photosynthates produced by the endosymbiotic dinoflagellate, belonging to the family of Symbiodiniaceae. The antenna system in this group consists of the water-soluble peridinin-chlorophyll $\textit{a}$-protein (PCP) and the intrinsic membrane chlorophyll $\textit{a}$-chlorophyll $c_2$-peridinin protein complex (acpPC). In this report, a nonameric acpPC is reported in a dinoflagellate, Fugasium kawagutii (formerly Symbiodinium kawagutii sp. CS-156). We found that extensive biochemical purification altered the oligomerization states of the initially isolated nonameric acpPC. The excitation energy transfer pathways in the acpPC nonamer and its variants were studied using time-resolved fluorescence and time-resolved absorption spectroscopic techniques at 77 K. Compared to the well-characterized trimeric acpPC, the nonameric acpPC contains an 11 nm red-shifted terminal energy emitter and substantially altered excited state lifetimes of Chl $\textit{a}$. The observed energetic overlap of the fluorescence terminal energy emitters with the absorption of RCs is hypothesized to enable efficient downhill excitation energy transfer. Additionally, the shortened Chl $\textit{a}$ fluorescence decay lifetime in the oligomeric acpPC indicate a protective self-relaxation strategy. We propose that the highly-oligomerized acpPC nonamer represents an intact functional unit in the Symbiodiniaceae thylakoid membrane. They perform efficient excitation energy transfer (to RCs), and are under manageable regulations in favor of photoprotection.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2020

Fate of Internal Waves on a Shallow Shelf

Internal waves strongly influence the physical and chemical environment of coastal ecosystems worldwide. We report novel observations from a distributed temperature sensing (DTS) system that tracked the transformation of internal waves from the shelf break to the surf zone over a narrow shelf slope region in the South China Sea. The spatially continuous view of temperature fields provides a perspective of physical processes commonly available only in laboratory settings or numerical models, including internal wave reflection off a natural slope, shoreward transport of dense fluid within trapped cores, and observations of internal rundown (near-bed, offshore-directed jets of water preceding a breaking internal wave). Analysis shows that the fate of internal waves on this shelf—whether transmitted into shallow waters or reflected back offshore—is mediated by local water column density structure and background currents set by the previous shoaling internal waves, highlighting the importance of wave-wave interactions in nearshore internal wave dynamics.

54 ENVIRONMENTAL SCIENCES↗
NASA NTRS2021

Very High-Resolution Satellite-Derived Bathymetry and Habitat Mapping Using Pleiades-1 and ICESat-2

Accurate and reliable bathymetric data are needed for a wide diversity of marine research and management applications. Satellite-derived bathymetry represents a time saving method to map large shallow waters of remote regions compared to the current costly in situ measurement techniques. This study aims to create very high-resolution (VHR) bathymetry and habitat mapping in Mayotte island waters (Indian Ocean) by fusing 0.5 m Pleiades-1 passive multispectral imagery and active ICESat-2 LiDAR bathymetry. ICESat-2 georeferenced photons were filtered to remove noise and corrected for water column refraction. The bathymetric point clouds were validated using the French naval hydrographic and oceanographic service Litto3D® dataset and then used to calibrate the multispectral image to produce a digital depth model (DDM). The latter enabled the creation of a digital albedo model used to classify benthic habitats. ICESat-2 provided bathymetry down to 15 m depth with a vertical accuracy of bathymetry estimates reaching 0.89 m. The benthic habitats map produced using the maximum likelihood supervised classification provided an overall accuracy of 96.62%. This study successfully produced a VHR DDM solely from satellite data. Digital models of higher accuracy were further discussed in the light of the recent and near-future launch of higher spectral and spatial resolution satellites.

Bathymetry↗
DOE OSTI2026

Exponential crystallization in corals

Corals form their reef-building aragonite (CaCO 3 ) skeletons via transient precursor phases yet understanding of the dynamics of these early-stage transformations remains incomplete. Using time-independent myriad mapping (MM) at 50 nm resolution, we map five mineral phases near the skeleton surface of Stylophora pistillata corals grown in varying seawater pH. All precursors, crystalline and amorphous, exhibit a consistent exponential decay from the growth front, with a shared decay length of 0.7 ± 0.1 μm, independent of time, phase, or pH. This spatial decay, paired with the constant growth rate of the skeleton, reveals a decay time of 5.1 ± 0.5 minutes. The dominant precursor is not amorphous but crystalline: calcium carbonate hemihydrate (CCHH, CaCO₃·½H₂O). These results suggest that exponential crystallization kinetics govern coral biomineralization and may be a widespread feature in biogenic, geologic, and synthetic systems—traceable long after initial mineral deposition.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2023

Herbivorous Fish Microbiome Adaptations to Sulfated Dietary Polysaccharides

Marine herbivorous fish that feed primarily on macroalgae, such as those from the genus Kyphosus, are essential for maintaining coral health and abundance on tropical reefs. Here, deep metagenomic sequencing and assembly of gut compartment-specific samples from three sympatric, macroalgivorous Hawaiian kyphosid species have been used to connect host gut microbial taxa with predicted protein functional capacities likely to contribute to efficient macroalgal digestion. Bacterial community compositions, algal dietary sources, and predicted enzyme functionalities were analyzed in parallel for 16 metagenomes spanning the mid- and hindgut digestive regions of wild-caught fishes. Gene colocalization patterns of expanded carbohydrate (CAZy) and sulfatase (SulfAtlas) digestive enzyme families on assembled contigs were used to identify likely polysaccharide utilization locus associations and to visualize potential cooperative networks of extracellularly exported proteins targeting complex sulfated polysaccharides. These insights into the gut microbiota of herbivorous marine fish and their functional capabilities improve our understanding of the enzymes and microorganisms involved in digesting complex macroalgal sulfated polysaccharides.

09 BIOMASS FUELS↗
NASA NTRS2016

NEEMO 20: Science Training, Operations, and Tool Development

The 20th mission of the National Aeronautics and Space Administration (NASA) Extreme Environment Mission Operations (NEEMO) was a highly integrated evaluation of operational protocols and tools designed to enable future exploration beyond low-Earth orbit. NEEMO 20 was conducted from the Aquarius habitat off the coast of Key Largo, FL in July 2015. The habitat and its surroundings provide a convincing analog for space exploration. A crew of six (comprised of astronauts, engineers, and habitat technicians) lived and worked in and around the unique underwater laboratory over a mission duration of 14-days. Incorporated into NEEMO 20 was a diverse Science Team (ST) comprised of geoscientists from the Astromaterials Research and Exploration Science (ARES/XI) Division from the Johnson Space Center (JSC), as well as marine scientists from the Department of Biological Sciences at Florida International University (FIU). This team trained the crew on the science to be conducted, defined sampling techniques and operational procedures, and planned and coordinated the science focused Extra Vehicular Activities (EVAs). The primary science objectives of NEEMO 20 was to study planetary sampling techniques and tools in partial gravity environments under realistic mission communication time delays and operational pressures. To facilitate these objectives two types of science sites were employed 1) geoscience sites with available rocks and regolith for testing sampling procedures and tools and, 2) marine science sites dedicated to specific research focused on assessing the photosynthetic capability of corals and their genetic connectivity between deep and shallow reefs. These marine sites and associated research objectives included deployment of handheld instrumentation, context descriptions, imaging, and sampling; thus acted as a suitable proxy for planetary surface exploration activities. This abstract briefly summarizes the scientific training, scientific operations, and tool development conducted during NEEMO 20 with an emphasis on the primary lessons learned.

Graff, T.↗
NASA NTRS1991

North-Australian tropical seas circulation study

This investigation is intended to fully address the stated objective of the TOPEX/POSEIDON mission (National Aeronautics and Space Administration, 1986). Hence, we intend to use TOPEX/POSEIDON altimetry data to study the large-scale circulation of the Coral Sea Basin and the Arafura Sea and the mass exchange between these and adjoining basins. We will obtain data from two such cruises in 1993 and 1994 and combine them with TOPEX/POSEIDON radar altimetry data to identify interannual and seasonal changes in: (1) the location of the major ocean currents and the South Equatorial Current bifurcation in the Coral Sea; (2) the source region of the South Tropical Counter Current (STCC); and (3) the water exchange between the Coral Sea and the adjoining seas. We will also estimate seasonal and interannual variations in the horizontal transport of mass and heat associated with near-surface geostrophic and wind-driven currents. In addition, the tidal components of the Coral Sea will be studied to provide a correction for altimetry subtidal sea level changes and to develop a regional numerical model for tidal forcing in the Great Barrier Reef (GBR) and Papua New Guinea Reef regions.

Burrage, Derek↗
NASA NTRS2017

NEEMO 21: Tools, Techniques, Technologies and Training for Science Exploration

The 21st mission of the National Aeronautics and Space Administration (NASA) Extreme Environment Mission Operations (NEEMO) was a highly integrated operational field test and evaluation of tools, techniques, technologies, and training for science driven exploration during extravehicular activity (EVA). The mission was conducted in July 2016 from the Aquarius habitat, an underwater laboratory, off the coast of Key Largo in the Florida Keys National Marine Sanctuary. An international crew of eight (comprised of NASA and ESA astronauts, engineers, medical personnel, and habitat technicians) lived and worked in and around Aquarius and its surrounding reef environment for 16 days. The integrated testing (both interior and exterior objectives) conducted from this unique facility continues to support current and future human space exploration endeavors. Expanding on the scientific and operational evaluations conducted during NEEMO 20, the 21st NEEMO mission further incorporated a diverse Science Team comprised of planetary geoscientists from the Astromaterials Research and Exploration Science (ARES/XI) Division from the Johnson Space Center, marine scientists from the Department of Biological Sciences at Florida International University (FIU) Integrative Marine Genomics and Symbiosis (IMaGeS) Lab, and conservationists from the Coral Restoration Foundation. The Science Team worked in close coordination with the long-standing EVA operations, planning, engineering, and research components of NEEMO in all aspects of mission planning, development, and execution.

Graff, T.↗
DOE OSTI2021

Description of Paraxiopsis kensleyi n. sp., a new axiid lobster from the Gulf of Mexico (Crustacea: Decapoda: Axiidea)

A new species of axiid was discovered during sampling offshore deep banks on the middle continental shelf off Louisiana. Paraxiopsis kensleyi n. sp. appears to inhabit interstices and cavities of coralline algal rubble, rhodoliths, coral rubble, and other eroded calcareous substrates. Weakly separated from Eutrichocheles Wood-Mason, 1876 on the basis of morphology, present assignments of western Atlantic species to Paraxiopsis de Man, 1905 are regarded as provisional. The new species is described morphologically, and the coloration of freshly captured specimens is documented and compared to related species where possible. Coloration readily distinguishes mature specimens of the new species from Paraxiopsis spinipleura Kensley, 1996, with which it was initially confused. The diagnosis includes GenBank accession numbers for COI sequences to allow future molecular phylogenetic comparisons. Compared to regional species that share a similar dentation or spination on the submedian carina, the pleon of the new species is distinctive in the truncate ventral margin on pleura 2–4, as opposed to being broadly rounded or directed ventrally in an acutely triangular tip. The new species is the eighteenth species of Paraxiopsis worldwide and the ninth from western Atlantic waters, seven of which are now known to range into the Gulf of Mexico. An updated key to western Atlantic members of the genus is provided.

59 BASIC BIOLOGICAL SCIENCES↗