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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 127 records · Page 7
All sourcesNASA NTRSDOE OSTI
DOE OSTI2019

X-ray crystallography–based structural elucidation of enzyme-bound intermediates along the 1-deoxy-d-xylulose 5-phosphate synthase reaction coordinate

1-Deoxy-D-xylulose 5-phosphate synthase (DXPS) uses thiamine diphosphate (ThDP) to convert pyruvate and D-glyceraldehyde 3-phosphate ( D -GAP) into 1-deoxy-D-xylulose 5-phosphate (DXP), an essential bacterial metabolite. DXP is not utilized by humans; hence, DXPS has been an attractive antibacterial target. In this work, we investigate DXPS from Deinococcus radioduransN (DrDXPS), showing that it has similar kinetic parameters K m D-GAP AND K m pyruvate (54 ± 3 and 11 ± 1 μM, respectively) and comparable catalytic activity (kcat = 45 ± 2 min –1 ) with previously studied bacterial DXPS enzymes and employing it to obtain missing structural data on this enzyme family. In particular, we have determined crystallographic snapshots of DrDXPS in two states along the reaction coordinate: a structure of DrDXPS bound to C2α-phosphonolactylThDP (PLThDP), mimicking the native pre-decarboxylation intermediate C2α-lactylThDP (LThDP), and a native post-decarboxylation state with a bound enamine intermediate. The 1.94-Å-resolution structure of PLThDP-bound DrDXPS delineates how two active-site histidine residues stabilize the LThDP intermediate. Meanwhile, the 2.40-Å-resolution structure of an enamine intermediate-bound DrDXPS reveals how a previously unknown 17-Å conformational change removes one of the two histidine residues from the active site, likely triggering LThDP decarboxylation to form the enamine intermediate. These results provide insight into how the bi-substrate enzyme DXPS limits side reactions by arresting the reaction on the less reactive LThDP intermediate when its cosubstrate is absent. They also offer a molecular basis for previous low-resolution experimental observations that correlate decarboxylation of LThDP with protein conformational changes.

1-deoxy-D-xylulose 5-phosphate synthase (DXPS)↗
DOE OSTI2016

Solar Energy Prospecting in Remote Alaska: An Economic Analysis of Solar Photovoltaics in the Last Frontier State

This report provides a high-level examination of the potential economics of solar energy in rural Alaska across a geographically diverse sample of remote Alaska Native villages throughout the state. It analyzes at a high level what combination of diesel fuel prices, solar resource quality, and photovoltaic (PV) system costs could lead to an economically competitive moderate-scale PV installation at a remote village. The goal of this analysis is to provide a baseline economic assessment to highlight the possible economic opportunities for solar PV in rural Alaska for both the public and private sectors.

14 SOLAR ENERGY↗
DOE OSTI2016

Evaluating the Value of High Spatial Resolution in National Capacity Expansion Models using ReEDS

Power sector capacity expansion models (CEMs) have a broad range of spatial resolutions. This paper uses the Regional Energy Deployment System (ReEDS) model, a long-term national scale electric sector CEM, to evaluate the value of high spatial resolution for CEMs. ReEDS models the United States with 134 load balancing areas (BAs) and captures the variability in existing generation parameters, future technology costs, performance, and resource availability using very high spatial resolution data, especially for wind and solar modeled at 356 resource regions. In this paper we perform planning studies at three different spatial resolutions--native resolution (134 BAs), state-level, and NERC region level--and evaluate how results change under different levels of spatial aggregation in terms of renewable capacity deployment and location, associated transmission builds, and system costs. The results are used to ascertain the value of high geographically resolved models in terms of their impact on relative competitiveness among renewable energy resources.

24 POWER TRANSMISSION AND DISTRIBUTION↗
DOE OSTI2017

Exciton trapping is responsible for the long apparent lifetime in acid-treated MoS 2

Here, we show that deep trapped “dark” exciton states are responsible for the surprisingly long lifetime of band-edge photoluminescence in acid-treated single-layer MoS 2 . Temperature-dependent transient photoluminescence spectroscopy reveals an exponential tail of long-lived states extending hundreds of meV into the band gap. These subband states, which are characterized by a 4 μs radiative lifetime, quickly capture and store photogenerated excitons before subsequent thermalization up to the band edge where fast radiative recombination occurs. By intentionally saturating these trap states, we are able to measure the “true” 150 ps radiative lifetime of the band-edge exciton at 77 K, which extrapolates to ~ 600 ps at room temperature. These experiments reveal the dominant role of dark exciton states in acid-treated MoS 2 , and suggest that excitons spend >95 % of their lifetime at room temperature in trap states below the band edge. In this work, we hypothesize that these states are associated with native structural defects, which are not introduced by the superacid treatment; rather, the superacid treatment dramatically reduces nonradiative recombination through these states, extending the exciton lifetime and increasing the likelihood of eventual radiative recombination.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗
NASA NTRS1983

Preliminary airborne imaging spectrometer vegetation data

An airborne, pushbroom-style multispectral (1.2-2.4 micron) imaging sensor system known as Airborne Imaging Spectrometer (AIS) has been flown over the Pico Anticline region of the Santa Susana Mountains, California (U.S.A.). Initial interpretation of preliminary data sets suggest that the high spectral resolution data from AIS provide superior vegetation discrimination and mapping capabilities when compared with other imaging systems (MSS, TMS). AIS spectral data may also contain information concerning the state of health of both native and cultivated vegetation. Such capabilities (discrimination, mapping, and assessment of state of health) will be most useful in geobotanical assessment of this and other areas.

Rock, B. N.↗
DOE OSTI2016

Structure of photosystem II and substrate binding at room temperature

Light-induced oxidation of water by photosystem II (PS II) in plants, algae and cyanobacteria has generated most of the dioxygen in the atmosphere. PS II, a membrane-bound multi-subunit pigment protein complex, couples the one-electron photochemistry at the reaction centre with the four-electron redox chemistry of water oxidation at the Mn 4 CaO 5 cluster in the oxygen-evolving complex (OEC). Under illumination, the OEC cycles through five intermediate S-states (S 0 to S 4), in which S 1 is the dark-stable state and S 3 is the last semi-stable state before O-O bond formation and O 2 evolution. A detailed understanding of the O-O bond formation mechanism remains a challenge, and will require elucidation of both the structures of the OEC in the different S-states and the binding of the two substrate waters to the catalytic site. Here we report the use of femtosecond pulses from an X-ray free electron laser (XFEL) to obtain damage-free, room temperature structures of dark-adapted (S 1), two-flash illuminated (2F; S 3 -enriched), and ammonia-bound two-flash illuminated (2F-NH 3; S 3 -enriched) PS II. Although the recent 1.95 Å resolution structure of PS II at cryogenic temperature using an XFEL provided a damage-free view of the S 1 state, measurements at room temperature are required to study the structural landscape of proteins under functional conditions, and also for in situ advancement of the S-states. To investigate the water-binding site(s), ammonia, a water analogue, has been used as a marker, as it binds to the Mn 4 CaO 5 cluster in the S 2 and S 3 states. Since the ammonia-bound OEC is active, the ammonia-binding Mn site is not a substrate water site. This approach, together with a comparison of the native dark and 2F states, is used to discriminate between proposed O-O bond formation mechanisms.

Young, Iris D.↗
DOE OSTI2017

States of Cybersecurity: Electricity Distribution System Discussions

State and local entities that oversee the reliable, affordable provision of electricity are faced with growing and evolving threats from cybersecurity risks to our nation's electricity distribution system. All-hazards system resilience is a shared responsibility among electric utilities and their regulators or policy-setting boards of directors. Cybersecurity presents new challenges and should be a focus for states, local governments, and Native American tribes that are developing energy-assurance plans to protect critical infrastructure. This research sought to investigate the implementation of governance and policy at the distribution utility level that facilitates cybersecurity preparedness to inform the U.S. Department of Energy (DOE), Office of Energy Policy and Systems Analysis; states; local governments; and other stakeholders on the challenges, gaps, and opportunities that may exist for future analysis. The need is urgent to identify the challenges and inconsistencies in how cybersecurity practices are being applied across the United States to inform the development of best practices, mitigations, and future research and development investments in securing the electricity infrastructure. By examining the current practices and applications of cybersecurity preparedness, this report seeks to identify the challenges and persistent gaps between policy and execution and reflect the underlying motivations of distinct utility structures as they play out at the local level. This study aims to create an initial baseline of cybersecurity preparedness within the distribution electricity sector. The focus of this study is on distribution utilities not bound by the cybersecurity guidelines of the North American Electric Reliability Corporation (NERC) to examine the range of mechanisms taken by state regulators, city councils that own municipal utilities, and boards of directors of rural cooperatives.

14 SOLAR ENERGY↗
DOE OSTI2019

Deep-Level Defects and Impurities in InGaN Alloys

In this study, density functional theory calculations with a hybrid functional are used to examine the charge-state transition levels of native point defects and impurities in InGaN alloys, with the goal of identifying centers that play a role in defect-assisted recombination. Explicit alloy calculations are used to monitor the dependence of defect levels on indium content and distribution of In atoms. The relative shift (or lack thereof) of the charge-state transition levels of the different defects is explained by the atomic character of the defect state and whether it is derived from valence-band or conduction-band states of the host material or acts as an atomic-like impurity. The various possible atomic configurations of In and Ga cations for a given composition of InGaN lead to a distribution of charge-state transition levels. Defects on the nitrogen site lead to a larger spread in levels compared with defects on the cation site.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗
DOE OSTI2015

Folding of small knotted proteins: Insights from a mean field coarse-grained model

A small but relevant number of proteins whose native structure is known features nontrivial topology, i.e., they are knotted. Understanding the process of folding from a swollen unknotted state to the biologically relevant native conformation is, for these proteins, particularly difficult, due to their rate-limiting topological entanglement. To shed some light into this conundrum, we introduced a structure-based coarse-grained model of the protein, where the information about the folded conformation is encoded in bonded angular interactions only, which do not favor the formation of native contacts. A stochastic search scheme in parameter space is employed to identify a set of interactions that maximizes the probability to attain the knotted state. The optimal knotting pathways of the two smallest knotted proteins, obtained through this approach, are consistent with the results derived by means of coarse-grained as well as full atomistic simulations.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗
DOE OSTI2022

Glycerol Binding at the Narrow Channel of Photosystem II Stabilizes the Low-Spin S 2 State of the Oxygen-Evolving Complex

The oxygen-evolving complex (OEC) of photosystem II (PSII) cycles through redox intermediate states S i (i = 0–4) during the photochemical oxidation of water. The S 2 state involves an equilibrium of two isomers including the low-spin S 2 (LS-S 2 ) state with its characteristic electron paramagnetic resonance (EPR) multiline signal centered at g = 2.0, and a high-spin S 2 (HS-S 2 ) state with its g = 4.1 EPR signal. The relative intensities of the two EPR signals change under experimental conditions that shift the HS-S 2 /LS-S 2 state equilibrium. Here, we analyze the effect of glycerol on the relative stability of the LS-S 2 and HS-S 2 states when bound at the narrow channel of PSII, as reported in an X-ray crystal structure of cyanobacterial PSII. Our quantum mechanics/molecular mechanics (QM/MM) hybrid models of cyanobacterial PSII show that the glycerol molecule perturbs the hydrogen-bond network in the narrow channel, increasing the pK a of D1-Asp61 and stabilizing the LS-S 2 state relative to the HS-S 2 state. Here, the reported results are consistent with the absence of the HS-S 2 state EPR signal in native cyanobacterial PSII EPR spectra and suggest that the narrow water channel hydrogen-bond network regulates the relative stability of OEC catalytic intermediates during water oxidation.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2020

Uncovering the Role of Hole Traps in Promoting Hole Transfer from Multiexcitonic Quantum Dots to Molecular Acceptors

The understanding of electronic dynamics in multiexcitonic quantum dots (QDs) is important for designing efficient systems useful in high power scenarios, such as solar concentrators and multielectron charge transfer. The multiple charge carriers within a QD can undergo undesired Auger recombination events, which rapidly annihilate carriers on picosecond time scales and generate heat from absorbed photons instead of useful work. Compared to the transfer of multiple electrons, the transfer of multiple holes has proven to be more difficult due to slower hole transfer rates. To probe the competition between Auger recombination and hole transfer in CdSe, CdS, and CdSe/CdS QDs of varying sizes, we synthesized a phenothiazine derivative with optimized functionalities for binding to QDs as a hole accepting ligand and for spectroscopic observation of hole transfer. Transient absorption spectroscopy was used to monitor the photoinduced absorption features from both trapped holes and oxidized ligands under excitation fluences where the averaged initial number of excitons in a QD ranged from ~1 to 19. We observed fluence-dependent hole transfer kinetics that last around 100 ps longer than the predicted Auger recombination lifetimes, and the transfer of up to 3 holes per QD. Theoretical modeling of the kinetics suggests that binding of hole acceptors introduces trapping states significantly different from those in native QDs passivated with oleate ligands. Holes in these modified trap states have prolonged lifetimes, which promotes the hole transfer efficiency. These results highlight the beneficial role of hole-trapping states in devising hole transfer pathways in QD-based systems under multiexcitonic conditions.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
DOE OSTI2019

Invasion promotes invasion: Facilitation of C 3 perennial grass dominance in mixed C 3 /C 4 grassland by an invasive C 3 woody sprouter ( Prosopis glandulosa )

1. In the Southern Great Plains (SGP) of the United States, encroachment of the native invasive woody legume, honey mesquite (Prosopis glandulosa Torr.), has caused a decline in C4 mid-grass abundance. Prosopis glandulosa invasion has also facilitated growth of the C3 mid-grass species, Texas wintergrass (Nassella leucotricha [Trin & Rupr.] Pohl) initially beneath its canopy but extending to interspaces between P. glandulosa as stand density increases. Little is known about the stability of the Prosopis/Nassella association or C4 grass recovery following P. glandulosa disturbance. 2. We quantified C3 and C4 grass production in interspaces, and basal cover in interspaces and P. glandulosa subcanopy microsites for 9 years following P. glandulosa suppression (top-kill) and compared this to untreated P. glandulosa woodland (woodland). 3. The Prosopis/Nassella association limited the window of C4 mid-grass recovery to only a few years. Nassella leucotricha dominated grass production during the first 3 years after top-kill. C4 mid-grass recovery began in year 4, but was interrupted by severe drought in years 5 through 7. Recovery resumed in year 8, due to above- average summer rainfall, but P. glandulosa regrowth was large enough by this time to limit C4 mid-grass production to a third of its potential. 4. Nassella leucotricha basal cover remained dominant and stable in woodland sub-canopy microsites, even during drought, and only briefly declined in top-kill subcanopy microsites before returning to pretreatment levels by year 8 as P. glandulosa regrowth increased and provided shade. 5. Synthesis and applications. A single suppression event had little impact on disrupting the Prosopis/Nassella association and allowing C4 mid-grass recovery. The coupling of a deciduous, N-fixing C3 woody species with this C3 perennial grass may be a vegetative “state” that is resistant to multiple woody suppression disturbances and permanently limits the transition back to C4 grassland.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2016

Unveiling the Structural Basis That Regulates the Energy Transduction Properties within a Family of Triheme Cytochromes from Geobacter sulfurreducens

A family of triheme cytochromes from Geobacter sulfurreducens plays an important role in extracellular electron transfer. In addition to their role in electron transfer pathways, two members of this family (PpcA and PpcD) were also found to be able to couple e(-)/H+ transfer through the redox Bohr effect observed in the physiological pH range, a feature not observed for cytochromes PpcB and PpcE. In attempting to understand the molecular control of the redox Bohr effect in this family of cytochromes, which is highly homologous both in amino acid sequence and structures, it was observed that residue 6 is a conserved leucine in PpcA and PpcD, whereas in the other two characterized members (PpcB and PpcE) the equivalent residue is a phenylalanine. To determine the role of this residue located close to the redox Bohr center, we replaced Leu(6) in PpcA with Phe and determined the redox properties of the mutant, as well as its solution structure in the fully reduced state. In contrast with the native form, the mutant PpcAL6F is not able to couple the e(-)/H+ pathway. We carried out the reverse mutation in PpcB and PpcE (i.e., replacing Phe(6) in these two proteins by leucine) and the mutated proteins showed an increased redox Bohr effect. The results clearly establish the role of residue 6 in the control of the redox Bohr effect in this family of cytochromes, a feature that could enable the rational design of G. sulfurreducens strains that carry mutant cytochromes with an optimal redox Bohr effect that would be suitable for various biotechnological applications.

Dantas, Joana M.↗
DOE OSTI2018

Biochemical and Biophysical Methods for Analysis of Poly(ADP-Ribose) Polymerase 1 and Its Interactions with Chromatin

Poly (ADP-Ribose) Polymerase I (PARP-1) is a first responder to DNA damage and participates in the regulation of gene expression. The interaction of PARP-1 with chromatin and DNA is complex and involves at least two different modes of interaction. In its enzymatically inactive state, PARP-1 binds native chromatin with similar affinity as it binds free DNA ends. Automodification of PARP-1 affects interaction with chromatin and DNA to different extents. Here we describe a series of biochemical and biophysical techniques to quantify and dissect the different binding modes of PARP-1 with its various substrates. The techniques listed here allow for high throughput and quantitative measurements of the interaction of different PARP-1 constructs (inactive and automodified) with chromatin and DNA damage models.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2024

Development of optimal methods for collection, transportation, holding, handling, and tagging of juvenile American shad

American shad (Alosa sapidissima) are an anadromous fish species native to the United States that have an extensive range along the east coast, but their populations are declining worldwide. Acoustic telemetry can play a vital role in better understanding the behavior and survival of this sensitive species. A stepwise, systematic approach was used to assess juvenile shad survival during multiple stressors typically associated with an acoustic telemetry study. Minimizing out-of-water handling and the use of saltwater during collection increased 24-hour survival (78 to 99%) between the first two shad transports. Several experiments were conducted to determine the best transmitter design method for implanting juvenile shad. Saltwater was fundamental in keeping tagged shad alive overnight and during the tagging process. Shad as small as 50 mm were tagged using the pectoral incision method with no suture. In a 60-d holding evaluation, tagged fish survived at a comparable rate as their non-tagged counterparts (81.5% for tagged, 70% for untagged). Also, when tagged and untagged shad were exposed to a tank of predators, there was no difference in their survival. Results from this study are encouraging for improving conservation efforts for small, sensitive species of fish, like American shad. The techniques identified may help broaden the application of telemetry studies by informing researchers of optimal methods to ensure survival of tagged fish in future field studies looking to evaluate survival and entrainment rates of juvenile American shad.

59 BASIC BIOLOGICAL SCIENCES↗