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At least 127 records · Page 7

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DOE OSTI2019

Evaluating LULESH Kernels on OpenCL FPGA

FPGAs are becoming promising heterogeneous computing components for high-performance computing. In this paper, we evaluate the resource utilizations, performance, and performance per watt of our implementations of the LULESH kernels in OpenCL on an Arria10-based FPGA platform. LULESH is a complex proxy application in the CORAL benchmark suite. We choose two representative kernels “CalcFBHourglassForceForElems” and “EvalEOSForElems” from the application in our study. Compared with the baseline implementations, our optimizations improve the performance by a factor of 1.65X and 2.96X for the two kernels on the FPGA, respectively. Using directives for accelerator programming, we also evaluate the performance of the kernels on an Intel Xeon 16-core CPU and an Nvidia K80 GPU. We find that the FPGA, constrained by the memory bandwidth, can perform 1.05X to 3.4X better than the CPU and GPU for small problem sizes. For the first kernel, the performance per watt on the FPGA is 1.59X and 7.1X higher than that on an Intel Xeon 16-core CPU and an Nvidia K80 GPU, respectively. For the second kernel, the performance per watt on the GPU is 1.82X higher than that on the FPGA. However, the performance per watt on the FPGA is 1.77X higher than that on the CPU.

FPGA↗

DOE OSTI2025

Are light curve classification metrics good proxies for SN Ia cosmological constraining power?

Context. When selecting a light curve classifier for use as part of a photometric supernova Ia (SN Ia) cosmological analysis, it is common to make decisions based on metrics of classification performance, such as the contamination within the photometrically classified SN Ia sample, rather than a measure of cosmological constraining power. If the former is an appropriate proxy for the latter, this practice would eliminate the computational expense of a full cosmology forecast in the analysis pipeline design process. Aims. This study tests the assumption that light curve classification metrics are an appropriate proxy for cosmology metrics. Methods. We emulated photometric SN Ia cosmology light curve samples with controlled contamination rates of individual contaminant classes and evaluated each of them under a set of classification metrics. We then derived cosmological parameter constraints from all samples under two common analysis approaches and quantified the impact of contamination by each contaminant class on the resulting cosmological parameter estimates. Results. We observe that cosmology metrics are sensitive to both the contamination rate and the class of the contaminating population, whereas the classification metrics are shown to be insensitive to the latter. Conclusions. Based on these findings, we discourage any exclusive reliance on light curve classification-based metrics for analysis design decisions, which (counterintuitively) include but are not limited to the classifier choice. Instead, we recommend optimising science analysis pipeline design choices using a metric of the information gained about the physical parameters of interest.

79 ASTRONOMY AND ASTROPHYSICS↗

DOE OSTI2016

Program optimizations: The interplay between power, performance, and energy

Practical considerations for future supercomputer designs will impose limits on both instantaneous power consumption and total energy consumption. Working within these constraints while providing the maximum possible performance, application developers will need to optimize their code for speed alongside power and energy concerns. This paper analyzes the effectiveness of several code optimizations including loop fusion, data structure transformations, and global allocations. A per component measurement and analysis of different architectures is performed, enabling the examination of code optimizations on different compute subsystems. Using an explicit hydrodynamics proxy application from the U.S. Department of Energy, LULESH, we show how code optimizations impact different computational phases of the simulation. This provides insight for simulation developers into the best optimizations to use during particular simulation compute phases when optimizing code for future supercomputing platforms. Here, we examine and contrast both x86 and Blue Gene architectures with respect to these optimizations.

97 MATHEMATICS AND COMPUTING↗

DOE OSTI2019

GPCNeT

Network congestion is one of the biggest problems facing HPC systems today, affecting system throughput, performance, user experience, and reproducibility. Congestion manifests as run-to-run variability due to contention for shared resources (e.g., filesystems) or routes between compute endpoints. Despite its significance, current network benchmarks fail to proxy the real-world network utilization seen on congested systems. We propose a new open-source benchmark suite called the Global Performance and Congestion Network Tests (GPCNeT) to advance the state of the practice in this area. The guiding principles used in designing GPCNeT are described and the methodology employed to maximize its utility is presented. The capabilities of GPCNeT are evaluated by analyzing results from several world's largest HPC systems, including an evaluation of congestion management on a next-generation network. The results show that systems of all technologies and scales are susceptible to congestion and this work motivates the need for congestion control in next-generation networks.

Chunduri, Sudheer↗

DOE OSTI2025

Correlating Superconducting Qubit Performance Losses to Sidewall Near-Field Scattering via Terahertz Nanophotonics

Elucidating dielectric losses, structural heterogeneity, and interface imperfections is critical for improving coherence in superconducting qubits. However, most diagnostics rely on destructive electron microscopy or low-throughput millikelvin quantum measurements. Here, we demonstrate noninvasive terahertz (THz) nano-imaging/-spectroscopy of encapsulated niobium transmon qubits, revealing sidewall near-field scattering that correlates with qubit coherence. We further employ a THz hyperspectral line scan to probe dielectric responses and field participation at Al junction interfaces. These findings highlight the promise of THz near-field methods as a high-throughput proxy characterization tool for guiding material selection and optimizing processing protocols to improve qubit and quantum circuit performance.

Kim, Richard H.J. [Ames Lab]↗

DOE OSTI2017

Performance Prediction Toolkit

The Performance Prediction Toolkit (PPT), is a scalable co-design tool that contains the hardware and middle-ware models, which accept proxy applications as input in runtime prediction. PPT relies on Simian, a parallel discrete event simulation engine in Python or Lua, that uses the process concept, where each computing unit (host, node, core) is a Simian entity. Processes perform their task through message exchanges to remain active, sleep, wake-up, begin and end.

Chennupati, Gopinath↗

DOE OSTI2024

Agent-Based Model of Combined Community- and Jail-Based Take-Home Naloxone Distribution

Importance Opioid-related overdose accounts for almost 80 000 deaths annually across the US. People who use drugs leaving jails are at particularly high risk for opioid-related overdose and may benefit from take-home naloxone (THN) distribution. Objective To estimate the population impact of THN distribution at jail release to reverse opioid-related overdose among people with opioid use disorders. Design, Setting, and Participants This study developed the agent-based Justice-Community Circulation Model (JCCM) to model a synthetic population of individuals with and without a history of opioid use. Epidemiological data from 2014 to 2020 for Cook County, Illinois, were used to identify parameters pertinent to the synthetic population. Twenty-seven experimental scenarios were examined to capture diverse strategies of THN distribution and use. Sensitivity analysis was performed to identify critical mediating and moderating variables associated with population impact and a proxy metric for cost-effectiveness (ie, the direct costs of THN kits distributed per death averted). Data were analyzed between February 2022 and March 2024. Intervention Modeled interventions included 3 THN distribution channels: community facilities and practitioners; jail, at release; and social network or peers of persons released from jail. Main Outcomes and Measures The primary outcome was the percentage of opioid-related overdose deaths averted with THN in the modeled population relative to a baseline scenario with no intervention. Results Take-home naloxone distribution at jail release had the highest median (IQR) percentage of averted deaths at 11.70% (6.57%-15.75%). The probability of bystander presence at an opioid overdose showed the greatest proportional contribution (27.15%) to the variance in deaths averted in persons released from jail. The estimated costs of distributed THN kits were less than $\$$15 000 per averted death in all 27 scenarios. Conclusions and Relevance This study found that THN distribution at jail release is an economical and feasible approach to substantially reducing opioid-related overdose mortality. Training and preparation of proficient and willing bystanders are central factors in reaching the full potential of this intervention.

Tatara, Eric [Argonne National Laboratory (ANL), A↗

DOE OSTI2024

Simulation-based inference for parameter estimation of complex watershed simulators

High-resolution, spatially distributed process-based (PB) simulators are widely employed in the study of complex catchment processes and their responses to a changing climate. However, calibrating these PB simulators using observed data remains a significant challenge due to several persistent issues, including the following: (1) intractability stemming from the computational demands and complex responses of simulators, which renders infeasible calculation of the conditional probability of parameters and data, and (2) uncertainty stemming from the choice of simplified representations of complex natural hydrologic processes. Here, we demonstrate how simulation-based inference (SBI) can help address both of these challenges with respect to parameter estimation. SBI uses a learned mapping between the parameter space and observed data to estimate parameters for the generation of calibrated simulations. To demonstrate the potential of SBI in hydrologic modeling, we conduct a set of synthetic experiments to infer two common physical parameters – Manning's coefficient and hydraulic conductivity – using a representation of a snowmelt-dominated catchment in Colorado, USA. We introduce novel deep-learning (DL) components to the SBI approach, including an “emulator” as a surrogate for the PB simulator to rapidly explore parameter responses. We also employ a density-based neural network to represent the joint probability of parameters and data without strong assumptions about its functional form. While addressing intractability, we also show that, if the simulator does not represent the system under study well enough, SBI can yield unreliable parameter estimates. Approaches to adopting the SBI framework for cases in which multiple simulator(s) may be adequate are introduced using a performance-weighting approach. The synthetic experiments presented here test the performance of SBI, using the relationship between the surrogate and PB simulators as a proxy for the real case.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2019

The Open High Throughput Computing Content Delivery Network

LHC experiments make extensive use of web proxy caches, especially for software distribution via the CernVM File System and for conditions data via the Frontier Distributed Database Caching system. Since many jobs read the same data, cache hit rates are high and hence most of the traffic flows efficiently over Local Area Networks. However, it is not always possible to have local web caches, particularly for opportunistic cases whereexperiments have little control over site services. The Open High Throughput Computing (HTC) Content Delivery Network (CDN), openhtc.io, aims to address this by using web proxy caches from a commercial CDN provider. Cloudflare provides a simple interface for registering DNS aliases of any web server and does reverse proxy web caching on those aliases. The openhtc.io domain is hosted on Cloudflare's free tier CDN which has no bandwidth limit and makes use of data centers throughout the world, so the average performance for clients is much improved compared to reading from CERN or a Tier 1. The load on WLCG servers is also significantly reduced. WLCG Web Proxy Auto Discovery is used to select local web caches when they are available and otherwise select openhtc.io caching. This paper describes the Open HTC CDN in detail and provides initial results from its use for LHC@Home and USCMS opportunistic computing.

97 MATHEMATICS AND COMPUTING↗

DOE OSTI2023

Utah FORGE: Fault Shear Reactivation Experimental Data for Fluid Injection-Rate Controls on Seismic Moment

Included are experimental data recorded from shear experiments that specifically explore the link between fluid-injection rate and seismic moment resulting from shear reactivation of laboratory faults. Raw mechanical data from three experiments are included alongside corresponding MATLAB scripts that import and plot the data, as well as use it to calculate shear and normal stress. Experiments are performed on 2.5-3 inch long granitoid cores from the Utah FORGE EGS demonstration site, containing a single inclined fracture with small-scale roughness added to the fracture surface. The raw data included here were recorded from an aluminum triaxial pressure vessel (TEMCO) configured with three independent servo-controlled pumps, with distilled water used as the working fluid. The pumps control confining pressure, upstream pore pressure, and axial pressure, with each pump connected to a LabView interface to record applied pressures, cumulative injected water volumes, and pump flow rates. The downstream outlet from the fracture is closed to allow pressurization, which is measured by an external pressure transducer. A linear variable differential transformer (LVDT) attached to the axial piston measures axial displacement, from which we calculate shear displacement along the fracture. Additionally, P-wave transducers are used to record acoustic signatures, where acoustic emission events and maximum amplitudes are compared against seismic moment and shear slip velocity. Fluid injection rates range between 0.05 mL/min, 0.25 mL/min, and 0.75 mL/min for each experiment. Along-fault pressure distributions are progressively less uniform as injection rates increase, representing a switch from steady-state to transient conditions. Triggered shear displacement is used as a proxy for seismic moment and is indexed against cumulative injection volume and rate. Each experiment is performed under constant shear stress conditions, and the sample is fully saturated with DI water. Axial and confining stresses are applied to 3 MPa through pressure-stepping in 500 kPa increments. The pore pressure is held constant at 200 kPa prior to initiating the experiment, and initial axial displacement is recorded. The axial stress is then increased to initiate shear mobilization during the loading phase (run-in) until a peak steady state is achieved. The initial shear stress is reduced to approximately 80% of the peak shear stress by decreasing the axial stress, then held constant for the duration of each experiment.

15 GEOTHERMAL ENERGY↗

DOE OSTI2020

Cation-Specific Electrokinetic Separations Using Prussian Blue Intercalation Reactions

In this work, we report a new approach for forming ion depletion zones (IDZs) using intercalation reactions at an electrochemically controlled Prussian blue (PB) film. The experiments described here were performed using a microfluidic device, wherein a charged fluorophore in solution was used as a proxy to monitor IDZ formation. In the presence of K + , intercalation reactions proceed readily to form an IDZ, and thus enrich the fluorophore up to 37-fold. In the presence of the larger hydrated Li + or tetrabutylammonium (TBA + ) ions, however, ion intercalation proceeded less quickly than with K + . Slower ion intercalation resulted in a weaker IDZ and correspondingly lower enrichment factors of eight- and six-fold, respectively. These results are significant because they show that PB intercalation reactions selectively form an IDZ. Accordingly, we anticipate that these findings will lead to a better understanding and further interesting applications of intercalation materials like PB for efficient and selective enrichment and separations.

99 GENERAL AND MISCELLANEOUS↗

DOE OSTI2015

Do solar cycles influence giant cell arteritis and rheumatoid arthritis incidence?

Our objective was to examine the influence of solar cycle and geomagnetic effects on the incidence of giant cell arteritis (GCA) and rheumatoid arthritis (RA). Methods: We used data from patients with GCA (1950-2004) and RA (1955-2007) obtained from population-based cohorts. Yearly trends in age-adjusted and sex-adjusted incidence were correlated with the F10.7 index (solar radiation at 10.7 cm wavelength, a proxy for the solar extreme ultraviolet radiation) and AL index (a proxy for the westward auroral electrojet and a measure of geomagnetic activity). Fourier analysis was performed on AL, F10.7, and GCA and RA incidence rates. Results: The correlation of GCA incidence with AL is highly significant: GCA incidence peaks 0-1 year after the AL reaches its minimum (ie, auroral electrojet reaches a maximum). The correlation of RA incidence with AL is also highly significant. RA incidence rates are lowest 5-7 years after AL reaches maximum. AL, GCA and RA incidence power spectra are similar: they have a main peak (periodicity) at about 10 years and a minor peak at 4-5 years. However, the RA incidence power spectrum main peak is broader (8-11 years), which partly explains the lower correlation between RA onset and AL. The auroral electrojets may be linked to the decline of RA incidence more strongly than the onset of RA. The incidences of RA and GCA are aligned in geomagnetic latitude. Conclusions: AL and the incidences of GCA and RA all have a major periodicity of about 10 years and a secondary periodicity at 4-5 years. Geomagnetic activity may explain the temporal and spatial variations, including east-west skewness in geographic coordinates, in GCA and RA incidence, although the mechanism is unknown. Lastly, the link with solar, geospace and atmospheric parameters need to be investigated. These novel findings warrant examination in other populations and with other autoimmune diseases.

58 GEOSCIENCES↗

DOE OSTI2024

Probing the evolution of fault properties during the seismic cycle with deep learning

We use seismic waves that pass through the hypocentral region of the 2016 M6.5 Norcia earthquake together with Deep Learning (DL) to distinguish between foreshocks, aftershocks and time-to-failure (TTF). Binary and N-class models defined by TTF correctly identify seismograms in test with > 90% accuracy. We use raw seismic records as input to a 7 layer CNN model to perform the classification. Here we show that DL models successfully distinguish seismic waves pre/post mainshock in accord with lab and theoretical expectations of progressive changes in crack density prior to abrupt change at failure and gradual postseismic recovery. Performance is lower for band-pass filtered seismograms (below 10 Hz) suggesting that DL models learn from the evolution of subtle changes in elastic wave attenuation. Tests to verify that our results indeed provide a proxy for fault properties included DL models trained with the wrong mainshock time and those using seismic waves far from the Norcia mainshock; both show degraded performance. Our results demonstrate that DL models have the potential to track the evolution of fault zone properties during the seismic cycle. If this result is generalizable it could improve earthquake early warning and seismic hazard analysis.

58 GEOSCIENCES↗

DOE OSTI2014

X-ray-selected galaxy groups in Boötes

We present the X-ray and optical properties of the galaxy groups selected in the Chandra X-Boötes survey. We used follow-up Chandra observations to better define the group sample and their X-ray properties. Group redshifts were measured from the AGN and Galaxy Evolution Survey spectroscopic data. We used photometric data from the NOAO Deep Wide Field Survey to estimate the group richness (N {sub gals}) and the optical luminosity (L {sub opt}). Our final sample comprises 32 systems at z < 1.75 with 14 below z = 0.35. For these 14 systems, we estimate velocity dispersions (σ {sub gr}) and perform a virial analysis to obtain the radii (R {sub 200} and R {sub 500}) and total masses (M {sub 200} and M {sub 500}) for groups with at least 5 galaxy members. We use the Chandra X-ray observations to derive the X-ray luminosity (L{sub X} ). We examine the performance of the group properties σ{sub gr}, L {sub opt}, and L{sub X} , as proxies for the group mass. Understanding how well these observables measure the total mass is important to estimate how precisely the cluster/group mass function is determined. Exploring the scaling relations built with the X-Boötes sample and comparing these with samples from the literature, we find a break in the L{sub X} -M {sub 500} relation at approximately M {sub 500} = 5 × 10{sup 13} M {sub ☉} (for M {sub 500} > 5 × 10{sup 13} M {sub ☉}, M{sub 500}∝L{sub X}{sup 0.61±0.02}, while for M {sub 500} ≤ 5 × 10{sup 13} M {sub ☉}, M{sub 500}∝L{sub X}{sup 0.44±0.05}). Thus, the mass-luminosity relation for galaxy groups cannot be described by the same power law as galaxy clusters. A possible explanation for this break is the dynamical friction, tidal interactions, and projection effects that reduce the velocity dispersion values of the galaxy groups. By extending the cluster luminosity function to the group regime, we predict the number of groups that new X-ray surveys, particularly eROSITA, will detect. Based on our cluster/group luminosity function estimates, eROSITA will identify ∼1800 groups (L{sub X} = 10{sup 41}-10{sup 43} erg s{sup –1}) within a distance of 200 Mpc. Since groups lie in large-scale filaments, this group sample will map the large-scale structure of the local universe.

79 ASTRONOMY AND ASTROPHYSICS↗

DOE OSTI2019

Application of Machine Learning and Artificial Intelligence in Proxy Modeling for Fluid Flow in Porous Media

Reservoir simulation models are the major tools for studying fluid flow behavior in hydrocarbon reservoirs. These models are constructed based on geological models, which are developed by integrating data from geology, geophysics, and petro-physics. As the complexity of a reservoir simulation model increases, so does the computation time. Therefore, to perform any comprehensive study which involves thousands of simulation runs, a very long period of time is required. Several efforts have been made to develop proxy models that can be used as a substitute for complex reservoir simulation models. These proxy models aim at generating the outputs of the numerical fluid flow models in a very short period of time. This research is focused on developing a proxy fluid flow model using artificial intelligence and machine learning techniques. In this work, the proxy model is developed for a real case CO2 sequestration project in which the objective is to evaluate the dynamic reservoir parameters (pressure, saturation, and CO2 mole fraction) under various CO2 injection scenarios. The data-driven model that is developed is able to generate pressure, saturation, and CO2 mole fraction throughout the reservoir with significantly less computational effort and considerably shorter period of time compared to the numerical reservoir simulation model.

Amini, Shohreh↗

DOE OSTI2015

Multi-Purpose, Application-Centric, Scalable I/O Proxy Application

MACSio is a Multi-purpose, Application-Centric, Scalable I/O proxy application. It is designed to support a number of goals with respect to parallel I/O performance testing and benchmarking including the ability to test and compare various I/O libraries and I/O paradigms, to predict scalable performance of real applications and to help identify where improvements in I/O performance can be made within the HPC I/O software stack.

Miller, M.C.↗

DOE OSTI2015

Multi-Purpose, Application-Centric, Scalable I/O Proxy Application

Miller, M. C.↗

DOE OSTI2015

Automated Design Space Exploration with Aspen

Architects and applications scientists often use performance models to explore a multidimensional design space of architectural characteristics, algorithm designs, and application parameters. With traditional performance modeling tools, these explorations forced users to first develop a performance model and then repeatedly evaluate and analyze the model manually. These manual investigations proved laborious and error prone. More importantly, the complexity of this traditional process often forced users to simplify their investigations. To address this challenge of design space exploration, we extend our Aspen (Abstract Scalable Performance Engineering Notation) language with three new language constructs: user-defined resources, parameter ranges, and a collection of costs in the abstract machine model. Then, we use these constructs to enable automated design space exploration via a nonlinear optimization solver. We show how four interesting classes of design space exploration scenarios can be derived from Aspen models and formulated as pure nonlinear programs. The analysis tools are demonstrated using examples based on Aspen models for a three-dimensional Fast Fourier Transform, the CoMD molecular dynamics proxy application, and the DARPA Streaming Sensor Challenge Problem. Our results show that this approach can compose and solve arbitrary performance modeling questions quickly and rigorously when compared to the traditional manual approach.

Spafford, Kyle L.↗