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LSKnowledge: Nexus for Transformative Scientific Discoveries and Enhanced Information Retrieval in NASA Life Sciences Portal

We stand at the brink of an extraordinary transformation in the field of AI, driven by the convergence of generative AI and semantic technologies (e.g., knowledge graphs). This fusion holds immense potential and could redefine the future of scientific exploration, particularly in the realm of life sciences research. In this context, we shed light on the pivotal roles that Large Language Models (LLMs) and semantic technologies will play in advancing research, unearthing and comprehending life sciences information through innovative approaches, and empowering researchers to extract insights from NASA's extensive Life Sciences Data Archive. Within the NASA Life Sciences Portal (NLSP), the integration of LLMs and semantic technologies unlocks several advanced capabilities. First and foremost, it equips scientists with sophisticated tools to manage the ever-expanding wealth of scientific literature and data. Furthermore, it facilitates the creation of knowledge graphs that visually represent intricate relationships among biological entities, enabling comprehensive systems-level analysis. Additionally, the fusion of generative AI (including LLMs) and semantic technology can significantly benefit NASA's life sciences research by enhancing information retrieval and hypothesis generation. These tools enhance natural language understanding, facilitating knowledge discovery within NLSP. The overarching vision is to establish a cohesive knowledge ecosystem within NLSP, harnessing the power of LLMs and semantic technologies to synthesize and cross-reference data from diverse missions, disciplines, and research domains. This holistic approach ultimately deepens our understanding of how space environments impact life sciences data. To advance this initiative, we have launched LSKnowledge, aimed at enhancing the information retrieval capabilities of NLSP. In the short term, our primary goal is to develop a robust semantic search system. This system will empower HRP (Human Research Program) researchers to navigate NLSP data repositories more efficiently and precisely, catalyzing the process of hypothesis formation and scientific breakthroughs. To achieve this, we have employed pre-trained LLMs as part of a semantic search tool that can rank and highlight the most relevant records for user queries. To assess the tool's performance, we have curated a set of approximately 200 queries from subject matter experts (SMEs) and manually ranked the top records retrieved by both the current search system and the new semantic search, using SME judgments as the gold standard for relevancy. Herein, we present the results of our comparative analysis and illustrate how these findings have informed the fine-tuning of the system for enhanced performance. In the long term, our objectives include 1) retrieving publicly available information and integrating it with NLSP data to provide more precise answers to user queries, and 2) incorporating non-textual information from the NLSP database into our approach. In conclusion, the fusion of LLMs and semantic technologies within NLSP represents a pioneering stride towards reshaping the landscape of scientific discovery. This synergy not only equips researchers with powerful tools to navigate the burgeoning sea of information but also facilitates a deeper understanding of complex biological relationships, all while accelerating hypothesis generation and knowledge discovery. Through our initiative, LSKnowledge, we are committed to continually refining and expanding these capabilities, with the aim of not only enhancing information retrieval but also integrating diverse data sources to provide more precise insights. In the grand vision, NLSP strives to become the cornerstone of a comprehensive knowledge ecosystem, unraveling the enigmatic intricacies of life sciences phenomena in the context of space environments.

Life Sciences↗

Explore Astronaut Photography with the New GIS Data Portal

The Gateway to Astronaut Photography of Earth (GAPE, eol.jsc.nasa.gov) contains the complete collection of all Earth observing photography captured as part of the Crew Earth Observations (CEO) project on the International Space Station. Astronaut photography is a valuable remote sensing data set that can provide images ranging from high resolution (~4m/pixel) nadir views to oblique views through the atmosphere. Nighttime imagery collected as part of CEO constitutes the highest resolution publicly available nighttime visible light data. This data support dozens of research projects looking at urbanization, land use/change, disaster response, and many others. Our team has deployed a new interactive map tool that greatly expands the functionality of the GAPE data set, enabling researchers to easily search our collection of fully georeferenced daytime and nighttime imagery around the world. Users can download the georeferenced tiles directly through the portal or through an API interface. The data hosted on this new tool is growing every day as more images are processed through our auto-georeferencing process.

Kenton R Fisher↗

Transformation of the NASA Life Sciences Portal to a FAIR Data Point

The FAIR principles emphasize optimizing metadata, the vast majority of which are textual in nature, and often organized into attribute name-value pairs. This uniformity has led to the development of guidelines and best practices for providing programmatic access to scientific data through their metadata, yielding the first iteration of the FAIR Data Point Specifications (FDPS). A key feature of the FDPS is its support for automated agents seeking and fetching data without first needing to learn a plethora of different application programming interfaces. These software agents can interrogate metadata catalogs that adhere to FDPS in a uniform manner because each catalog describes itself and its metadata schema consistently. This approach enhances the sustainability of data retrieval support, allowing systems to refine and update their metadata schemas as needed and without requiring data-seeking software agents to change how they interrogate FDPS catalogs. An essential aspect of the FDPS is the standardization of data catalog semantics, which formalizes concepts such as “metadata” and “metadata service” and links them to other concepts specifications including the Data Catalog Vocabulary (DCAT), a W3C standard that is also the basis of NASA-STD-2831 “Metadata Standard for Data Discoverability,” authored by NASA’s Office of the Chief Information Officer. The FDPS references DCAT (version 2) elements which focus on the distribution of datasets and support the goal of stream-lined catalog integration across repositories for improved data discovery. Additionally, the FDPS also prescribe the use of Linked Data Platform elements for data catalog-metadata record containment descriptions, allowing users to ascertain which data and metadata belong to which catalogs. NASA’s Life Sciences Portal is implementing the FDPS while formalizing its metadata schema to support the accelerated synthesis of knowledge from space life sciences investigations.

platform↗

Search for Higgs Portal Scalars and Heavy Neutral Leptons Decaying in the MicroBooNE Detector

This thesis presents a search for Higgs Portal Scalars (HPS) and Heavy Neutral Leptons (HNL) decaying in the MicroBooNE liquid argon time projection chamber (LArTPC). The measurement was performed using data collected in-time with the Neutrino at the Main Injector (NuMI) beam with a total exposure corresponding to $7.01 \times 10^{20}$ protons on target. Mono-energetic HPS and HNL would be produced from kaons decaying at rest in the NuMI hadron absorber, before travelling ${\sim}100$~m to the MicroBooNE detector where they decay. A single selection and search strategy is used to target decays of HPS to $\mu\mu$ pairs and HNL to $\mu\pi$ pairs. The results are expressed as limits, at the $90\%$ confidence level, on the mixing angles that control the rates of production and decay for each new particle. For the HNL model, upper limits are set on the mixing parameter $\mumix$ in the range [$12.9 \times 10^{-8}$, $0.54 \times 10^{-8}$] for HNL with masses in the region $246$--$385$~MeV. % This represents an order of magnitude increase in sensitivity to the previous MicroBooNE HNL result. For the HPS model, limits on the scalar-Higgs mixing angle $\theta^2$ are set, excluding a region with a lower boundary between [$31.3 \times10^{-9}$, $1.09 \times 10^{-9}$] and an upper boundary between [$2.50 \times 10^{-5}$, $5.05 \times 10^{-9}$] for scalars with a mass of $212$--$275$ MeV. These results set the first constraints in this region of parameter space from a dedicated experimental search for HPS.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Search for Higgs Portal Scalars and Heavy Neutral Leptons Decaying in the MicroBooNE Detector

This thesis presents a search for Higgs Portal Scalars (HPS) and Heavy Neutral Leptons (HNL) decaying in the MicroBooNE liquid argon time projection chamber (LArTPC). The measurement was performed using data collected in-time with the Neutrino at the Main Injector (NuMI) beam with a total exposure corresponding to 7.01x10^20 protons on target. Mono-energetic HPS and HNL would be produced from kaons decaying at rest in the NuMI hadron absorber, before travelling ~100 m to the MicroBooNE detector where they decay. A single selection and search strategy is used to target decays of HPS to muon-muon pairs and HNL to muon-pion pairs. The results are expressed as limits, at the 90% confidence level, on the mixing angles that control the rates of production and decay for each new particle. For the HNL model, upper limits are set on the mixing parameter |U\mu4|^2 in the range [12.9 x 10^-8, 0.54 x 10^-8] for HNL with masses in the region 246 - 385 MeV. For the HPS model, limits on the scalar-Higgs mixing angle \theta^2 are set, excluding a region with a lower boundary between [31.3 x 10^-9, 1.09 x 10^-9] and an upper boundary between [2.50 x 10^-5, 5.05 x 10^-9] for scalars with a mass of 212-275 MeV. These results set the first constraints in this region of parameter space from a dedicated experimental search for HPS.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Operational Guidelines for Use of Radiation Portal Monitors in Nuclear Facilities

This article provides guidelines (not requirements) for the testing, operation, and maintenance of radiation portal monitors used to scan pedestrian and vehicular traffic entering or exiting nuclear facilities to prevent unauthorized removal of nuclear material. The intended audience is facility managers, supervisors, and operators who are responsible for establishing and maintaining radiation detection systems, who are likely well acquainted with physical security procedures, but may not have a familiarity with the operation of radiation detection.

Enders, Alexander [Oak Ridge National Laboratory (↗

Addendum to "Testing meson portal dark sector solutions to the MiniBooNE anomaly at CCM"

In Aguilar-Arevalo et al. [Phys. Rev. D 109, 095017 (2024)], we explored various effective field theories that could explain the MiniBooNE excess involving long-lived particles produced from charged meson decays and the sensitivity of the Coherent CAPTAIN Mills experiment to these models. In this addendum, we extend the analysis to project sensitivity of upcoming MicroBooNE data to the long-lived particle models considered in the previous work. We find that a dedicated MicroBooNE analysis of the single photon final state with longer exposure and improved signal efficiency will be sensitive to these new physics explanations of the MiniBooNE excess, and could rule them out with a null observation at the 95% confidence level.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Adrian Portales Coop Internship Report

Using the thesis of W.R. Nolan (cite) as a guide, Cobalt Iron (CoFe) powders were reacted with 0.1 wt.% and 0.2 wt.% phosphoric acid in a 20:1 ratio of acetone to phosphoric acid. The powders were then dried at room temperature. The resulting phosphate coated CoFe was then mixed with 0.75 wt.% of the lubricant N,N' ethylene bis-stearamide (trade name: Acrawax C) and hot pressed to form a consolidated soft magnetic material referred to as CoFeP. With an avenue of synthesis for CoFeP determined, a proper amount of stock was synthesized for continuous “brick” production. While under current optimization, these 1x1 mm magnetic bricks will ultimately be placed and secured along the inside wall of each MK Magnetics transformer core by an appropriate CoFeP dispersed epoxy. As of now each brick has been produced though a pressing and annealing process via square 2x2 cm die. Before a brick is made a pressure calculation is run to ensure the dies maximum operating pressure is not exceeded. Figure 1. ensures the user’s safety by showing that the tons-on-ram required for a 2x2 cm square die to reach 760 MPa is below the point of die failure.

36 MATERIALS SCIENCE↗

Cyclic (Alkyl)(amino)carbene Ligands Enable Cu‐Catalyzed Markovnikov Protoboration and Protosilylation of Terminal Alkynes: A Versatile Portal to Functionalized Alkenes**

Abstract Regioselective hydrofunctionalization of alkynes represents a straightforward route to access alkenyl boronate and silane building blocks. In previously reported catalytic systems, high selectivity is achieved with a limited scope of substrates and/or reagents, with general solutions lacking. Herein, we describe a selective copper‐catalyzed Markovnikov hydrofunctionalization of terminal alkynes that is facilitated by strongly donating cyclic (alkyl)(amino)carbene (CAAC) ligands. Using this method, both alkyl‐ and aryl‐substituted alkynes are coupled with a variety of boryl and silyl reagents with high α‐selectivity. The reaction is scalable, and the products are versatile intermediates that can participate in various downstream transformations. Preliminary mechanistic experiments shed light on the role of CAAC ligands in this process.

Gao, Yang↗

Dark initial state radiation and the kinetic mixing portal

Data from Planck measurements of the cosmic microwave background (CMB) place important constraints on models with light dark matter (DM) and light mediators especially when both lie in the mass range below ~ 1 GeV. In models involving kinetic mixing where the dark photon acts as the mediator, these constraints are easily satisfied and the appropriate DM relic density achievable if the DM is, e.g., a complex scalar, where p-wave annihilation occurs, or is the lighter component of a split pseudo-Dirac state where co-annihilation dominates. In both of these cases, although higher order in the dark gauge coupling, g D , the corresponding annihilation processes including dark photon initial state radiation (ISR) will be dominantly s-wave with essentially temperature independent cross sections. The rates for these dark ISR associated processes, though not yielding cross sections large enough to contribute to the relic density, can still run into possible conflicts with the bounds arising from the CMB. In this paper we perform a preliminary study of the present and potential future constraints that the CMB imposes on the parameter spaces for both of these scenarios due to the existence of this dark ISR. Further analyses of the effects of dark ISR in DM annihilation is clearly warranted.

79 ASTRONOMY AND ASTROPHYSICS↗

A Right-handed neutrino portal to the hidden sector: active neutrinos and their twins in an F-theory model

We analyze the neutrino phenomenology in an SU(5) F-theory model with both a visible sector and a twin hidden sector. At low energies, the strong and weak scales of the two sectors may differ but the spectrum of states is described by the MSSM (MSSM') in the visible (twin) sectors. What is special about the model is that there are right-handed neutrinos which couple to both sectors via Yukawa couplings. As a result, assuming 3 right-handed neutrinos with a large mass much greater than the weak scale, at tree-level the seesaw mechanism results in 3 massive Majorana neutrinos and 3 massless ones. The massless neutrinos acquire mass via radiative corrections. In our analysis, the massless neutrinos are predominantly active neutrinos, while the massive neutrinos are predominantly sterile neutrinos. We fit the active neutrino masses and mixing angles and discuss the phenomenology of the lightest sterile neutrino. Finally we consider some possible scenarios for cosmology.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Heavy long-lived dark vector via a gluonic portal

We study a dark gauge boson Z′ that exclusively couples to the QCD gluons through higher dimensional operators. These operators are generated from integrating out of heavy ultraviolet resonances carrying both QCD and dark gauge charges. With SU(3)C gauge invariance, charge and parity symmetries preserved, we find that the leading effective operators are restricted to have the form of Z′GGG and Z′Z′GG at dimension-eight, which can naturally render the Z′ particle long-lived, and serve as a viable dark matter candidate. We investigate the phenomenology of these operators with both collider experiments and cosmological observation, without and with the assumption that this dark gauge boson plays the role of the dominant dark matter component. For an unstable Z′, we show that depending on its lifetime, it can be probed by various observables up to ultraviolet physics scale around 10 9 GeV. For Z′ being dark matter, we find that $m_{Z'}$ ≳ 1 TeV is consistent with the thermal freeze-out scenario. In contrast, in the freeze-in scenario, the extremely small couplings leave the relevant parameter space largely unconstrained by current experiments.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗