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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 127 records · Page 7
All sourcesNASA NTRSDOE OSTI
NASA NTRS1992

Protein sequences and redox titrations indicate that the electron acceptors in reaction centers from heliobacteria are similar to Photosystem I

Photosynthetic reaction centers isolated from Heliobacillus mobilis exhibit a single major protein on SDS-PAGE of 47 000 Mr. Attempts to sequence the reaction center polypeptide indicated that the N-terminus is blocked. After enzymatic and chemical cleavage, four peptide fragments were sequenced from the Heliobacillus mobilis apoprotein. Only one of these sequences showed significant specific similarity to any of the protein and deduced protein sequences in the GenBank data base. This fragment is identical with 56% of the residues, including both cysteines, found in highly conserved region that is proposed to bind iron-sulfur center Fx in the Photosystem I reaction center peptide that is the psaB gene product. The similarity to the psaA gene product in this region is 48%. Redox titrations of laser-flash-induced photobleaching with millisecond decay kinetics on isolated reaction centers from Heliobacterium gestii indicate a midpoint potential of -414 mV with n = 2 titration behavior. In membranes, the behavior is intermediate between n = 1 and n = 2, and the apparent midpoint potential is -444 mV. This is compared to the behavior in Photosystem I, where the intermediate electron acceptor A1, thought to be a phylloquinone molecule, has been proposed to undergo a double reduction at low redox potentials in the presence of viologen redox mediators. These results strongly suggest that the acceptor side electron transfer system in reaction centers from heliobacteria is indeed analogous to that found in Photosystem I. The sequence similarities indicate that the divergence of the heliobacteria from the Photosystem I line occurred before the gene duplication and subsequent divergence that lead to the heterodimeric protein core of the Photosystem I reaction center.

NASA Discipline Number 52-30↗
NASA NTRS1990

Characterization and distribution of a maize cDNA encoding a peptide similar to the catalytic region of second messenger dependent protein kinases

Maize (Zea mays) roots respond to a variety of environmental stimuli which are perceived by a specialized group of cells, the root cap. We are studying the transduction of extracellular signals by roots, particularly the role of protein kinases. Protein phosphorylation by kinases is an important step in many eukaryotic signal transduction pathways. As a first phase of this research we have isolated a cDNA encoding a maize protein similar to fungal and animal protein kinases known to be involved in the transduction of extracellular signals. The deduced sequence of this cDNA encodes a polypeptide containing amino acids corresponding to 33 out of 34 invariant or nearly invariant sequence features characteristic of protein kinase catalytic domains. The maize cDNA gene product is more closely related to the branch of serine/threonine protein kinase catalytic domains composed of the cyclic-nucleotide- and calcium-phospholipid-dependent subfamilies than to other protein kinases. Sequence identity is 35% or more between the deduced maize polypeptide and all members of this branch. The high structural similarity strongly suggests that catalytic activity of the encoded maize protein kinase may be regulated by second messengers, like that of all members of this branch whose regulation has been characterized. Northern hybridization with the maize cDNA clone shows a single 2400 base transcript at roughly similar levels in maize coleoptiles, root meristems, and the zone of root elongation, but the transcript is less abundant in mature leaves. In situ hybridization confirms the presence of the transcript in all regions of primary maize root tissue.

NASA Program Space Biology↗
NASA NTRS1998

Two genes with similarity to bacterial response regulators are rapidly and specifically induced by cytokinin in Arabidopsis

Cytokinins are central regulators of plant growth and development, but little is known about their mode of action. By using differential display, we identified a gene, IBC6 (for induced by cytokinin), from etiolated Arabidopsis seedlings, that is induced rapidly by cytokinin. The steady state level of IBC6 mRNA was elevated within 10 min by the exogenous application of cytokinin, and this induction did not require de novo protein synthesis. IBC6 was not induced by other plant hormones or by light. A second Arabidopsis gene with a sequence highly similar to IBC6 was identified. This IBC7 gene also was induced by cytokinin, although with somewhat slower kinetics and to a lesser extent. The pattern of expression of the two genes was similar, with higher expression in leaves, rachises, and flowers and lower transcript levels in roots and siliques. Sequence analysis revealed that IBC6 and IBC7 are similar to the receiver domain of bacterial two-component response regulators. This homology, coupled with previously published work on the CKI1 histidine kinase homolog, suggests that these proteins may play a role in early cytokinin signaling.

Non-NASA Center↗
DOE OSTI2025

Reassessing the Origins and Contemporary Relevance of ck Acceptability Parameters: Evolving Perspectives on Similarity

“Sensitivity and Uncertainty Analyses Applied to Criticality Safety Validation,” introduces sensitivity and uncertainty methods to address challenges in defining and extending areas of applicability for criticality safety validation. These areas are traditionally defined by the bounds or limits on key parameters, but establishing valid ranges and managing complex parameter variations remain challenging. NUREG/CR-6655 introduces ck and other integral indices, as well as concepts such as the completeness of benchmark coverage, to better quantify system similarities. The work proposed herein seeks to evaluate these foundational concepts to ensure that the bounds remain effective in guiding the assessment of similarity and applicability in modern applications. The concept of completeness, along with other parameters envisioned within the framework, serves as an example of the foundational ideas that have been established, though their effectiveness in practice may not be fully understood. Advancements in scripting tools, coupled with the speed and efficiency of modern computing and statistical models, now allow for faster and more thorough assessments than previously possible. These advancements also enable the identification of trends within the data, which could provide additional insight into system behavior and further broaden the scope of previously performed benchmarks. By leveraging these capabilities, we will revisit and expand the scope of these foundational methods to determine whether the necessary elements for robust similarity evaluation are already embedded, partially realized, or remain untapped.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗
DOE OSTI2020

Orthogonal Polynomials Defined by Self-Similar Measures with Overlaps

Here, we study orthogonal polynomials with respect to self-similar measures, focusing on the class of infinite Bernoulli convolutions, which are defined by iterated function systems with overlaps, especially those defined by the Pisot, Garsia, and Salem numbers. By using an algorithm of Mantica, we obtain graphs of the coefficients of the 3-term recursion relation defining the orthogonal polynomials. We use these graphs to predict whether the singular infinite Bernoulli convolutions belong to the Nevai class. Based on our numerical results, we conjecture that all infinite Bernoulli convolutions with contraction ratios greater than or equal to 1/2 belong to Nevai’s class, regardless of the probability weights assigned to the self-similar measures.

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2024

Compatibility of divertor detachment and ELM suppression in DIII-D high- β p plasmas with ITER-similar shape

Abstract Integration of transient and steady-state divertor heat fluxes control with a high-performance core is necessary for future fusion reactors. In recent DIII-D high- β p experiments, divertor detachment and simultaneous edge localized mode (ELM) suppression are demonstrated while the plasma confinement quality is maintained high in ITER-similar shape. By optimizing the neon injection in high- β p scenario with ITER-similar shape, deep detachment and ELM suppression are achieved with a high-performance core ( β N ∼ 2.8, β p ∼ 2.3) at q 95 ∼ 7.5. Partial divertor detachment and suppression of large ELMs are achieved at q 95 ∼ 6. The stability analyses suggest that with low neon injection, the density pedestal becomes higher and steeper and the T i profile also increases, therefore the increased edge pressure and higher current density destabilize the Peeling-Ballooning mode (PBM), which would lead to a large ELM collapse. With strong neon gas puffing, the significantly reduced pedestal pressure and current density, due to the degraded T e pedestal, lead to the stabilization of PBM and ELMs are suppressed. For both cases, the coupling between the large radius internal transport barrier (ITB) and edge pedestal is the key reason for maintaining high global performance. The formation of large radius ITB compensates for pedestal degradation. Such results could provide an attractive scenario to well control the transient and steady-state heat flux onto the divertor plates while maintaining good plasma performance, which is an important step toward the steady-state operation of future fusion reactors.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗
NASA NTRSDate not supplied

High-Dimensional Similarity Search with Quantum-Assisted Variational Autoencoder

Recent progress in quantum algorithms and hardware indicates the potential importance of quantum computing in the near future. However, finding suitable application areas remains an active area of research. Quantum machine learning is touted as a potential approach to demonstrate quantum advantage within both the gate-model and the adiabatic schemes. For instance, the QVAE has been proposed as a quantum enhancement to the discrete VAE. We extend on previous work and study the real-world applicability of a QVAE by presenting a proof-of-concept for similarity search in large-scale high-dimensional datasets. While exact and fast similarity search algorithms are available for low dimensional datasets, scaling to high-dimensional data is non-trivial. We show how to construct a space-efficient search index based on the latent space representation of a QVAE. Our experiments show a correlation between the Hamming distance in the embedded space and the Euclidean distance in the original space on the MODIS dataset. Further, we find real-world speedups compared to linear search and demonstrate memory-efficient scaling to half a billion data points.

Data mining, similarity search, quantum machine le↗
DOE OSTI2023

Applications of Similarity Analysis of Reactivity-initiated Accident Experiments in TREAT

Experimental testing capabilities have been created to perform reactivity-initiated accident experiments in the Transient Reactor Test Facility for fuel safety testing of Accident Tolerant Fuel concepts and to extend the burnup limits for our current light water reactor fuel designs. Completely prototypic test conditions are not possible and compromises naturally have to be made. To date, the representativity of the small scale safety testing to a similar event in a commercial reactor is made by comparing a few specific phenomena of interest. The goal of this work is to apply similarity analysis as another metric to judge the representativity of in-pile safety tests to full-scaled accident scenario.

11 NUCLEAR FUEL CYCLE AND FUEL MATERIALS↗
DOE OSTI2022

Estimation of the Surface Fluxes for Heat and Momentum in Unstable Conditions with Machine Learning and Similarity Approaches for the LAFE Data Set

Abstract Measurements of three flux towers operated during the land atmosphere feedback experiment (LAFE) are used to investigate relationships between surface fluxes and variables of the land–atmosphere system. We study these relations by means of two machine learning (ML) techniques: multilayer perceptrons (MLP) and extreme gradient boosting (XGB). We compare their flux derivation performance with Monin–Obukhov similarity theory (MOST) and a similarity relationship using the bulk Richardson number (BRN). The ML approaches outperform MOST and BRN. Best agreement with the observations is achieved for the friction velocity. For the sensible heat flux and even more so for the latent heat flux, MOST and BRN deviate from the observations while MLP and XGB yield more accurate predictions. Using MOST and BRN for latent heat flux, the root mean square errors (RMSE) are 107 Wm $$^{-2}$$ - 2 and 121 Wm $$^{-2}$$ - 2 , respectively, as well as the intercepts of the regression lines are $$\approx 110$$ ≈ 110 Wm $$^{-2}$$ - 2 . For the ML methods, the RMSEs reduce to 31 Wm $$^{-2}$$ - 2 for MLP and 33 Wm $$^{-2}$$ - 2 for XGB as well as the intercepts to just 4 Wm $$^{-2}$$ - 2 for MLP and $$-1$$ - 1 Wm $$^{-2}$$ - 2 for XGB with slopes of the regression lines close to 1, respectively. These results indicate significant deficiencies of MOST and BRN, particularly for the derivation of the latent heat flux. In fact, in contrast to the established theories, feature importance weighting demonstrates that the ML methods base their improved derivations on net radiation, the incoming and outgoing shortwave radiations, the air temperature gradient, and the available water contents, but not on the water vapor gradient. The results imply that further studies of surface fluxes and other turbulent variables with ML techniques provide great promise for deriving advanced flux parameterizations and their implementation in land–atmosphere system models.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2022

Bio-inspired non self-similar hierarchical elastic metamaterials

Hierarchy provides unique opportunities for the design of advanced materials with superior properties that arise from architecture, rather than from constitutive material response. Contrary to the quasi-static regime, where the potential of hierarchy has been largely explored, its role in vibration mitigation and wave manipulation remains elusive. So far, the majority of the studies concerning hierarchical elastic metamaterials have proposed a self-similar repetition of a specific unit cell at multiple scale levels, leading to the activation of the same bandgap mechanism at different frequencies. On the contrary, here, we show that by designing non self-similar hierarchical geometries allows us to create periodic structures supporting multiple, highly attenuative and broadband bandgaps involving (independently or simultaneously) different scattering mechanisms, namely, Bragg scattering, local resonance and/or inertial amplification, at different frequencies. The type of band gap mechanism is identified and discussed by examining the vibrational mode shapes and the imaginary component of the wavenumber in the dispersion diagram of the unit cell. Finally, we also experimentally confirm this by performing measurements in the lowest frequency regime on a 3D printed structure. Hierarchical design strategies may find application in vibration mitigation for civil, aerospace and mechanical engineering.

36 MATERIALS SCIENCE↗
DOE OSTI2024

On the transferability of residence time distributions in two 10-km long river sections with similar hydromorphic units

Quantifying hydrologic exchange fluxes (HEFs) at the stream-groundwater interface and their residence time distributions (RTDs) in the subsurface are important for managing the water quality and ecosystem health in dynamic river corridors. However, direct simulating high-spatial resolution HEFs and RTDs can be time-consuming, especially for watershed-scale modeling. Efficient surrogate models linking RTDs to hydromorphic units (HUs) can be alternatives for simulating RTDs in large-scale models. A common concern of these surrogate models, though, is the transferability of the relationship between the RTDs and HUs from one river corridor to another. To address this issue, this work evaluates the HEFs and resulting RTD-HU relationships for two 10-km long river corridors along the Columbia River leveraging a one-way coupled three-dimensional transient surface-subsurface water transport modeling framework we previously developed. Applying such a framework at the two river corridors with similar HUs allows for quantitative comparisons of HEFs and RTDs using both statistical tests and machine learning classification models. Finally, our comparison shows that the similarity and transferability of the RTD-HU relationship is very low for the two investigated river sections, which suggests that devising a general algorithm to estimate RTDs based solely on surface water hydrodynamics and short-distance river channel topography data, as well as HU classification, might be nearly impossible.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2020

The mean logarithm emerges with self-similar energy balance.

The attached eddy hypothesis of Townsend (The Structure of Turbulent Shear Flow, 1956, Cambridge University Press) states that the logarithmic mean velocity admits self-similar energy-containing eddies which scale with the distance from the wall. Over the past decade, there has been a significant amount of evidence supporting the hypothesis, placing it to be the central platform for the statistical description of the general organisation of coherent structures in wall-bounded turbulent shear flows. Nevertheless, the most fundamental question, namely why the hypothesis has to be true, has remained unanswered over many decades. Under the assumption that the integral length scale is proportional to the distance from the wall y , in the present study we analytically demonstrate that the mean velocity is a logarithmic function of y if and only if the energy balance at the integral length scale is self-similar with respect to y , providing a theoretical basis for the attached eddy hypothesis. The analysis is subsequently verified with the data from a direct numerical simulation of incompressible channel flow at the friction Reynolds number Reτ≃5200 (Lee & Moser, J. Fluid Mech., vol. 774, 2015, pp. 395–415).

42 ENGINEERING↗
DOE OSTI2020

Simulated Biomass Sorghum GHG Reduction Potential is Similar to Maize

Policy support for cellulosic biofuels is contingent on their achieving much greater reductions in life-cycle greenhouse gas emissions than corn starch ethanol. Biomass sorghum has been suggested as a genetically and agronomically tractable feedstock species to augment near-term cellulosic feedstock production. This study used DayCent modeling to investigate biomass sorghum production emissions relative to corn with and without stover utilization at 3,265 across the rainfed United States. Sorghum produced greater average feedstock dry matter (15.6±1.4 vs. 14.8±2.2 Mg ha -1 yr -1 ) and slightly lower estimated ethanol energy yields (10.6±1.0 vs. 11.8±2.9 MJ m -2 yr -1 ) as corn grain with 75% stover collection. The high biomass removals in both the sorghum and corn stover scenarios led to soil organic carbon losses on 90% and 100% of sites, respectively. Average feedstock production emissions intensities were similar between sorghum and corn with 75% stover removal (17.6±2.8 vs. 18.8±3.0 g CO 2 e MJ -1 ), but were notably lower under sorghum for sites in the southwestern study region (13.6±3.0 vs. 22.5±3.1 g CO 2 e MJ -1 ). Futhermore, these results suggest that biomass sorghum produces cellulosic feedstock with similar emissions to corn grain and at current yield levels is unlikely to meet the Renewable Fuel Standard emissions reduction threshold for cellulosic biofuels.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2022

Two Distinct Cu(II)-V(IV) Superexchange Interactions with Similar Bond Angles in a Triangular ?CuV2? Fragment

The strength and sign of superexchange interactions are often predicted on the basis of the bond angles between magnetic ions, but complications may arise in situations with a nontrivial arrangement of the magnetic orbitals. We report on a novel molecular tetramer compound [Cu(H2O)dmbpy]2[V2O2F8] (dmbpy = 4,4 '-dimethyl-2,2 ' bipyridyl) that is composed of triangular "CuV2" fragments and displays a spin gap behavior. By combining first-principles calculations and electronic models, we reveal that superexchange Cu-V interactions carry drastically diHerent coupling strengths along two Cu-F-V pathways with comparable bond angles in the triangular "CuV2" fragment. Counterintuitively, their strong disparity is found to originate from the restricted symmetry of the half-filled Cu dx2-y2 orbital stabilized by the crystal field, leading to one dominating antiferromagnetic Cu-V coupling in each fragment. We revisit the magnetic properties of the reported spin-gapped chain compound [enH2]Cu(H2O)2[V2O2F8] (enH2 = ethylene diammonium) containing similar triangular "CuV2" fragments, and the magnetic behavior of the molecular tetramer and the chain compounds is rationalized as that of weakly coupled spin dimers and spin trimers, respectively. This work demonstrates that fundamentally diHerent magnetic couplings can be observed between magnetic ions with similar bond angles in a single spin motif, thus providing a strategy to introduce various exchange interactions combined with low dimensionality in heterometallic Cu(II)-V(IV) compounds.

Complexes↗
DOE OSTI2024

Coupled Cluster Theory for Nonadiabatic Dynamics: Nuclear Gradients and Nonadiabatic Couplings in Similarity Constrained Coupled Cluster Theory

Coupled cluster theory is one of the most accurate electronic structure methods for predicting ground and excited state chemistry. However, the presence of numerical artifacts at electronic degeneracies, such as complex energies, has made it difficult to apply the method in nonadiabatic dynamics simulations. While it has already been shown that such numerical artifacts can be fully removed by using similarity constrained coupled cluster (SCC) theory [J. Phys. Chem. Lett. 2017, 8(19), 4801–4807], simulating dynamics requires efficient implementations of gradients and nonadiabatic couplings. Here, we present an implementation of nuclear gradients and nonadiabatic derivative couplings at the similarity constrained coupled cluster singles and doubles (SCCSD) level of theory, thereby making possible nonadiabatic dynamics simulations using a coupled cluster theory that provides a correct description of conical intersections between excited states. We present a few numerical examples that show good agreement with literature values and discuss some limitations of the method.

38 RADIATION CHEMISTRY, RADIOCHEMISTRY, AND NUCLEA↗
DOE OSTI2025

Nearby Sites Show Similar Upwind Sources and Differing Semivolatile Concentrations in Coastal Aerosol Particles

The Eastern Pacific Cloud Aerosol Precipitation Experiment (EPCAPE) characterized aerosol composition using measurements at two sites within 3 km (Scripps Pier and Mt. Soledad) from 15 February 2023 to 14 February 2024. Comparing the two sites shows the strong influence of upwind sources that results in similar monthly compositions at both sites. The seasonal changes in chemical mass concentrations were largely driven by the upwind source regions, with coastal northwesterly back-trajectories occurring 63−65% of the year and bringing submicrometer mass concentrations that were lower than the EPCAPE average for all trajectories at each site. In contrast, refractory black carbon (rBC) and nonrefractory (NR)-organics and nitrate mass concentrations exceeded EPCAPE average concentrations for back-trajectories from urban areas such as Los Angeles-Long Beach. For hourly measurements, NR-organics and non-sea-salt (NSS)-sulfate mass concentrations at Mt. Soledad were correlated strongly (r = 0.73−0.82) to those measured at Scripps Pier, but NR-nitrate was correlated only moderately (r = 0.63). The explanation for the lower correlation of NR-nitrate is both emissions between the sites and semivolatility, with semivolatility accounting for site-to-site changes in daily averages of +0.01 μg m −3 per percentage site-to-site difference in relative humidity and −0.07 μg m −3 per degree Celsius site-to-site difference in temperature. On average, comparing Scripps Pier to Mt. Soledad, NR-nitrate was higher by 29% because of relative humidity and lower by −26% because of temperature. NR-nitrate and rBC mass concentrations at Scripps Pier for nighttime were 13−15% higher than those for daytime because land breezes brought higher inland concentrations. Concentrations of rBC were 52% higher at Mt. Soledad than those measured at Scripps Pier, accompanied by increases in tracers for brake wear because of traffic on the steep roads within 10 m of that site. The implications are that these nearby sites had comparable monthly concentrations of measured components due to their similar backtrajectories, but hourly and daily concentration differences supported quantification of the meteorological effects from relative humidity and temperature on semivolatile NR-nitrate as well as minor differences from land−sea breezes and local emissions.

Aerosols↗
DOE OSTI2022

Neutral Loss Mass Spectral Data Enhances Molecular Similarity Analysis in $\mathrm{METLIN}$

We report Neutral loss (NL) spectral data presents a mirror of MS 2 data and is a valuable yet largely untapped resource for molecular discovery and similarity analysis. Tandem mass spectrometry (MS 2 ) data is effective for the identification of known molecules and the putative identification of novel, previously uncharacterized molecules (unknowns). Yet, MS 2 data alone is limited in characterizing structurally related molecules. To facilitate unknown identification and complement the METLIN-MS 2 fragment ion database for characterizing structurally related molecules, we have created a MS 2 to NL converter as a part of the METLIN platform. The converter has been used to transform METLIN’s MS 2 data into a neutral loss database (METLIN-NL) on over 860 000 individual molecular standards. The platform includes both the MS 2 to NL converter and a graphical user interface enabling comparative analyses between MS 2 and NL data. Examples of NL spectral data are shown with oxylipin analogues and two structurally related statin molecules to demonstrate NL spectra and their ability to help characterize structural similarity. Mirroring MS 2 data to generate NL spectral data offers a unique dimension for chemical and metabolite structure characterization.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2022

Unconventional self-similar Hofstadter superconductivity from repulsive interactions

Abstract Fractal Hofstadter bands have become widely accessible with the advent of moiré superlattices, opening the door to studies of the effect of interactions in these systems. In this work we employ a renormalization group (RG) analysis to demonstrate that the combination of repulsive interactions with the presence of a tunable manifold of Van Hove singularities provides a new mechanism for driving unconventional superconductivity in Hofstadter bands. Specifically, the number of Van Hove singularities at the Fermi energy can be controlled by varying the flux per unit cell and the electronic filling, leading to instabilities toward nodal superconductivity and chiral topological superconductivity with Chern number $${{{{{{{\mathcal{C}}}}}}}}=\pm 6$$ C = ± 6 . The latter is characterized by a self-similar fixed trajectory of the RG flow and an emerging self-similarity symmetry of the order parameter. Our results establish Hofstadter quantum materials such as moiré heterostructures as promising platforms for realizing novel reentrant Hofstadter superconductors.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗