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At least 127 records · Page 7

Quantifying cover crop effects on soil health and productivity

The dataset presented here supports the research paper entitled “A calculator to quantify cover crop effects on soil health and productivity”. Soil health (sometimes used synonymously with soil quality) is a concept that describes soil as a living system to sustain plants, animals, and human. Soil physical, chemical, and biological properties, along with their interactions, are required to quantify soil health. The use of cover crops in agricultural rotations may enhance soil health, yet there has been little progress in understanding how external factors such as climate, soil type, and agronomic practices affect soil and cash crop responses. In response, this dataset compiles measurements from 281 studies and provides an analysis of field-measured changes in 38 soil health indicators due to cover crop usage. Environmental and background indicators were also compiled to assess how climatic and management practices affect soil and cash crop responses to cover crops, with specific categories including climate type (tropical, arid, temperate, and continental), soil texture (coarse, medium, and fine), cover crop type (legume, grass, multi-species mixture, and other), and cash crop type (corn, soybean, wheat, vegetable, corn-soybean rotation, corn-soybean-wheat rotation, and other). An unbalanced analysis of variation was used to determine the hierarchy of most to least important factors that affected responsiveness of each soil health indicator. Based on the hierarchy structure, a soil health calculator was then developed to quantify the response of 13 parameters – erosion, runoff, weed suppression, soil aggregate stability, leaching, infiltration, microbial biomass carbon, soil bulk density, soil organic carbon, soil nitrogen, microbial biomass nitrogen, cash crop yield, and saturated hydraulic conductivity – to cover crops. The presented data in the calculator report the mean change in parameter values based on all combinations of climate, soil texture, cover crop type, and cash crop type.

54 ENVIRONMENTAL SCIENCES↗

Extrapolating carbon dynamics of seasonally dry tropical forests across geographic scales and into future climates: improving simulation models with empirical observations. Final report

This research focused on seasonally dry tropical forests (SDTFs), a biome that exhibits strong variation in ecological, hydrological and physical characteristics. Climate change is expected to strongly impact the atmospheric environment of SDTFs, and long-term trends in precipitation seasonality have already been detected. The extent to which such changes in seasonal moisture availability will impact SDTF carbon dynamics is highly uncertain, and much of this uncertainty hinges on poorly-understood belowground processes. Thus, the central objectives of this research were to qualitatively and quantitatively describe how belowground processes mediate the response of SDTF carbon dynamics to environmental change. We accomplished these aims through field campaigns in four tropical countries to characterize soil biogeochemistry and plant hydraulic traits, ecosystem-scale field experiments that manipulated both nutrients and rainfall, and simulation modeling.

54 ENVIRONMENTAL SCIENCES↗

Prospects for Improved Forecasts of Weather and Short-Term Climate Variability on Subseasonal (2-Week to 2-Month) Times Scales

This workshop, held in April 2002, brought together various Earth Sciences experts to focus on the subseasonal prediction problem. While substantial advances have occurred over the last few decades in both weather and seasonal prediction, progress in improving predictions on these intermediate time scales (time scales ranging from about two weeks to two months) has been slow. The goals of the workshop were to get an assessment of the "state of the art" in predictive skill on these time scales, to determine the potential sources of "untapped" predictive skill, and to make recommendations for a course of action that will accelerate progress in this area. One of the key conclusions of the workshop was that there is compelling evidence for predictability at forecast lead times substantially longer than two weeks. Tropical diabatic heating and soil wetness were singled out as particularly important processes affecting predictability on these time scales. Predictability was also linked to various low-frequency atmospheric "phenomena" such as the annular modes in high latitudes (including their connections to the stratosphere), the Pacific/North American (PNA) pattern, and the Madden Julian Oscillation (MJO). The latter, in particular, was highlighted as a key source of untapped predictability in the tropics and subtropics, including the Asian and Australian monsoon regions.

Schubert, Siegfried↗

Functional insights of novel Bathyarchaeia reveal metabolic versatility in their role in peatlands of the Peruvian Amazon

ABSTRACT The decomposition of soil organic carbon within tropical peatlands is influenced by the functional composition of the microbial community. In this study, building upon our previous work, we recovered a total of 28 metagenome-assembled genomes (MAGs) classified as Bathyarchaeia from the tropical peatlands of the Pastaza-Marañón Foreland Basin (PMFB) in the Amazon. Using phylogenomic analyses, we identified nine genus-level clades to have representatives from the PMFB, with four forming a putative novel family (“CandidatusPaludivitaceae”) endemic to peatlands. We focus on theCa. Paludivitaceae MAGs due to the novelty of this group and the limited understanding of their role within tropical peatlands. Functional analysis of these MAGs reveals that this putative family comprises facultative anaerobes, possessing the genetic potential for oxygen, sulfide, or nitrogen oxidation. This metabolic versatility can be coupled to the fermentation of acetoin, propanol, or proline. The other clades outsideCa. Paludivitaceae are putatively capable of acetogenesis andde novoamino acid biosynthesis and encode a high amount of Fe 3+ transporters. Crucially, theCa. Paludivitaceae are predicted to be carboxydotrophic, capable of utilizing CO for energy generation or biomass production. Through this metabolism, they could detoxify the environment from CO, a byproduct of methanogenesis, or produce methanogenic substrates like CO 2 and H 2 . Overall, our results show the complex metabolism and various lineages of Bathyarchaeia within tropical peatlands pointing to the need to further evaluate their role in these ecosystems. IMPORTANCE With the expansion of theCandidatusPaludivitaceae family by the assembly of 28 new metagenome assembled genomes, this study provides novel insights into their metabolic diversity and ecological significance in peatland ecosystems. From a comprehensive phylogenic and functional analysis, we have elucidated their putative unique facultative anaerobic capabilities and CO detoxification potential. This research highlights their crucial role in carbon cycling and greenhouse gas regulation. These findings are essential for resolving the microbial processes affecting peat soil stability, offering new perspectives on the ecological roles of previously underexplored and underrepresented archaeal populations.

Microbiology↗

A new primer set for Clade I nosZ that recovers genes from a broader range of taxa

Denitrification is an important global N cycle process. The gene encoding NosZ that converts nitrous oxide (N 2 O) to N 2 has been widely used as a biomarker to study denitrifying communities. However, conventional PCR primers target a limited range of the genetically diverse Clade I nosZ, and the amplicons are too long for sequencing on current NGS platforms. To address these issues, here we developed a new PCR primer set that amplifies a 355-bp region of Clade I nosZ and captures broader taxonomic coverage than conventional primers in in silico tests. When compared with the widely used nosZF_nosZR_Rich_2003 set using the same soil samples and the same sequencing depth, the new set retrieved genes from four times more unique species, with consistently higher general diversity-based metrics. The new primer set performed well with different sequencing platforms (Ion Torrent and Illumina), and among a wide variety of soils from polar to tropical, desert to agricultural, and surface to a very low biomass subsoil, with significant differences in denitrifying community diversity and composition. This new primer set for Clade I together with the primers recently reported for Clade II by Chee-Sanford et al. provides a more comprehensive assessment of denitrifier gene hosts, their ecological patterns, and the degree of novelty in retrieved gene sequences.

59 BASIC BIOLOGICAL SCIENCES↗

Predictabilty of time averages: The influence of the boundary forcing

The physical mechanisms through which changes in the boundary forcings of SST, soil moisture, albedo, sea ice, and snow influence the atmospheric circulation are discussed. Results of numerical experiments conducted with the GLAS climate model to determine the sensitivity of the model atmosphere to changes in boundary conditions of SST, soil moisture, and albedo over limited regions are dicussed. It is found that changes in SST and soil moisture in the tropic produce large changes in the atmospheric circulation and rainfall over the tropics as well as over mid-latitudes.

Shukla, J.↗

Production of nitrous oxide and consumption of methane by forest soils

Soils in an Amazonian rainforest are observed to release N2O at a rate larger than the global mean by about a factor of 20. Emissions from a New England hardwood forest are approximately 30 times smaller then Brazilian values. Atmospheric methane is consumed by soils in both systems. Tropical forests would provide a major source of atmospheric N2O if the Brazilian results are representative.

Keller, M.↗

The simulated Indian monsoon: A GCM sensitivity study

A series of sensitivity experiments are conducted in an attempt to understand and correct deficiencies in the simulation of the seasonal mean Indian monsoon with a global atmospheric general circulation model. The seasonal mean precipitation is less than half that observed. This poor simulation in seasonal integrations is independent of the choice of initial conditions and global sea surface temperature data used. Experiments are performed to test the sensitivity of the Indian monsoon simulation to changes in orography, vegetation, soil, wetness, and cloudiness. The authors find that the deficiency of the model precipitation simulation may be attributed to the use of an enhanced orography in the integrations. Replacement of this orography with a mean orography results in a much more realistic simulation of Indian monsoon circulation and rainfall. Experiments with a linear primitive equation model on the sphere suggest that this striking improvement is due to modulations of the orographically forced waves in the lower troposphere. This improvement in the monsoon simulation is due to the kinematic and dynamical effects of changing the topography, rather than the thermal effects, which were minimal. The magnitude of the impact on the Indian monsoon of the other sensitivity experiments varied considerably, but was consistently less than the impact of using the mean orography. However, results from the soil moisture sensitivity experiments suggest a possibly important role for soil moisture in simulating tropical precipitation, including that associated with the Indian monsoon.

Fennessy, M. J.↗

Progress and Challenges in Subseasonal Prediction

While substantial advances have occurred over the last few decades in both weather and seasonal prediction, progress in improving predictions on subseasonal time scales (approximately 2 weeks to 2 months) has been slow. In this talk I will highlight some of the recent progress that has been made to improve forecasts on subseasonal time scales and outline the challenges that we face both from an observational and modeling perspective. The talk will be based primarily on the results and conclusions of a recent NASA-sponsored workshop that focused on the subseasonal prediction problem. One of the key conclusions of that workshop was that there is compelling evidence for predictability at forecast lead times substantially longer than two weeks, and that much of that predictability is currently untapped. Tropical diabatic heating and soil wetness were singled out as particularly important processes affecting predictability on these time scales. Predictability was also linked to various low-frequency atmospheric phenomena such as the annular modes in high latitudes (including their connections to the stratosphere), the Pacific/North American pattern, and the Madden-Julian Oscillation. I will end the talk by summarizing the recommendations and plans that have been put forward for accelerating progress on the subseasonal prediction problem.

Schubert, Siegfried↗

Throughfall exclusion and fertilization effects on tropical dry forest tree plantations, a large-scale experiment

Abstract. Across tropical ecosystems, global environmental change is causing drier climatic conditions and increased nutrient deposition. Such changes represent large uncertainties due to unknown interactions between drought and nutrient availability in controlling ecosystem net primary productivity (NPP). Using a large-scale manipulative experiment, we studied for 4 years whether nutrient availability affects the individual and integrated responses of aboveground and belowground ecosystem processes to throughfall exclusion in 30-year-old mixed plantations of tropical dry forest tree species in Guanacaste, Costa Rica. We used a factorial design with four treatments: control, fertilization (F), drought (D), and drought + fertilization (D + F). While we found that a 13 %–15 % reduction in soil moisture only led to weak effects in the studied ecosystem processes, NPP increased as a function of F and D + F. The relative contribution of each biomass flux to NPP varied depending on the treatment, with woody biomass being more important for F and root biomass for D + F and D. Moreover, the F treatment showed modest increases in maximum canopy cover. Plant functional type (i.e., N fixation or deciduousness) and not the experimental manipulations was the main source of variation in tree growth. Belowground processes also responded to experimental treatments, as we found a decrease in nodulation for F plots and an increase in microbial carbon use efficiency for F and D plots. Our results emphasize that nutrient availability, more so than modest reductions in soil moisture, limits ecosystem processes in tropical dry forests and that soil fertility interactions with other aspects of drought intensity (e.g., vapor pressure deficit) are yet to be explored.

54 ENVIRONMENTAL SCIENCES↗

The predictive power of phylogeny on growth rates in soil bacterial communities

Abstract Predicting ecosystem function is critical to assess and mitigate the impacts of climate change. Quantitative predictions of microbially mediated ecosystem processes are typically uninformed by microbial biodiversity. Yet new tools allow the measurement of taxon-specific traits within natural microbial communities. There is mounting evidence of a phylogenetic signal in these traits, which may support prediction and microbiome management frameworks. We investigated phylogeny-based trait prediction using bacterial growth rates from soil communities in Arctic, boreal, temperate, and tropical ecosystems. Here we show that phylogeny predicts growth rates of soil bacteria, explaining an average of 31%, and up to 58%, of the variation within ecosystems. Despite limited overlap in community composition across these ecosystems, shared nodes in the phylogeny enabled ancestral trait reconstruction and cross-ecosystem predictions. Phylogenetic relationships could explain up to 38% (averaging 14%) of the variation in growth rates across the highly disparate ecosystems studied. Our results suggest that shared evolutionary history contributes to similarity in the relative growth rates of related bacteria in the wild, allowing phylogeny-based predictions to explain a substantial amount of the variation in taxon-specific functional traits, within and across ecosystems.

Walkup, Jeth (ORCID:0000000279082963)↗

Panama Rainforest Changes with Experimental Drought (PaRChED): Initial Effects of Partial Throughfall Exclusion on Soil Dynamics in Lowland Forests Across Variation in Rainfall and Soil Fertility

Changes in rainfall are predicted across tropical regions, with effects on nutrient, water, and carbon cycling. This chapter summarizes results from the first two years of a throughfall exclusion experiment in four lowland Panamanian forests that span a 1,000-mm change in rainfall and variation in soil fertility. Soil respiration (i.e., soil carbon dioxide [CO2 ] flux) declined with throughfall exclusion, with a site*season interaction, and the radiocarbon age of respired carbon was older in exclusion versus control plots. The decline in soil CO2 flux could be related to reduced fine root production and soil microbial biomass. Microbial community composition also changed with throughfall exclusion in infertile soils, and soil nutrients accumulated more in exclusion versus control plots during the dry season. The net effects on soil carbon storage will depend on the relative strengths of these effects over time. Continued research could improve predictions of tropical forest-climate feedbacks with changes in precipitation.

54 ENVIRONMENTAL SCIENCES↗

Tropical Rainfall Measuring Mission

Tropical rainfall affects the lives and economics of a majority of the Earth's population. Tropical rain systems, such as hurricanes, typhoons, and monsoons, are crucial to sustaining the livelihoods of those living in the tropics. Excess rainfall can cause floods and great property and crop damage, whereas too little rainfall can cause drought and crop failure. The latent heat release during the process of precipitation is a major source of energy that drives the atmospheric circulation. This latent heat can intensify weather systems, affecting weather thousands of kilometers away, thus making tropical rainfall an important indicator of atmospheric circulation and short-term climate change. Tropical forests and the underlying soils are major sources of many of the atmosphere's trace constituents. Together, the forests and the atmosphere act as a water-energy regulating system. Most of the rainfall is returned to the atmosphere through evaporation and transpiration, and the atmospheric trace constituents take part in the recycling process. Hence, the hydrological cycle provides a direct link between tropical rainfall and the global cycles of carbon, nitrogen, and sulfur, all important trace materials for the Earth's system. Because rainfall is such an important component in the interactions between the ocean, atmosphere, land, and the biosphere, accurate measurements of rainfall are crucial to understanding the workings of the Earth-atmosphere system. The large spatial and temporal variability of rainfall systems, however, poses a major challenge to estimating global rainfall. So far, there has been a lack of rain gauge networks, especially over the oceans, which points to satellite measurement as the only means by which global observation of rainfall can be made. The Tropical Rainfall Measuring Mission (TRMM), jointly sponsored by the National Aeronautics and Space Administration (NASA) of the United States and the National Space Development Agency (NASDA) of Japan, provides visible, infrared, and microwave observations of tropical and subtropical rain systems.The satellite observations are complemented by ground radar and rain gauge measurements to validate satellite rain estimation techniques. Goddard Space Flight Center's involvement includes the observatory, four instruments, integration and testing of the observatory, data processing and distribution, and satellite operations. TRMM has a design lifetime of three years. Data generated from TRMM and archived at the GDAAC are useful not only for hydrologists, atmospheric scientists, and climatologists, but also for the health community studying infectious diseases, the ocean research community, and the agricultural community.

Source record↗

A Conceptual Approach to Assimilating Remote Sensing Data to Improve Soil Moisture Profile Estimates in a Surface Flux/Hydrology Model: Overview - Part 1

Knowledge of the amount of water in the soil is of great importance to many earth science disciplines. Soil moisture is a key variable in controlling the exchange of water and energy between the land surface and the atmosphere. Thus, soil moisture information is valuable in a wide range of applications including weather and climate, runoff potential and flood control, early warning of droughts, irrigation, crop yield forecasting, soil erosion, reservoir management, geotechnical engineering, and water quality. Despite the importance of soil moisture information, widespread and continuous measurements of soil moisture are not possible today. Although many earth surface conditions can be measured from satellites, we still cannot adequately measure soil moisture from space. Research in soil moisture remote sensing began in the mid 1970s shortly after the surge in satellite development. Recent advances in remote sensing have shown that soil moisture can be measured, at least qualitatively, by several methods. Quantitative measurements of moisture in the soil surface layer have been most successful using both passive and active microwave remote sensing, although complications arise from surface roughness and vegetation type and density. Early attempts to measure soil moisture from space-borne microwave instruments were hindered by what is now considered sub-optimal wavelengths (shorter than 5 cm) and the coarse spatial resolution of the measurements. L-band frequencies between 1 and 3 GHz (10-30 cm) have been deemed optimal for detection of soil moisture in the upper few centimeters of soil. The Electronically Steered Thinned Array Radiometer (ESTAR), an aircraft-based instrument operating a 1,4 GHz, has shown great promise for soil moisture determination. Initiatives are underway to develop a similar instrument for space. Existing space-borne synthetic aperture radars (SARS) operating at C- and L-band have also shown some potential to detect surface wetness. The advantage of radar is its much higher resolution than passive microwave systems, but it is currently hampered by surface roughness effects and the lack of a good algorithm based on a single frequency and single polarization. In addition, its repeat frequency is generally low (about 40 days). In the meantime, two new radiometers offer some hope for remote sensing of soil moisture from space. The Tropical Rainfall Measuring Mission (TRMM) Microwave Imager (TMI), launched in November 1997, possesses a 10.65 GHz channel and the Advanced Microwave Scanning Radiometer (AMSR) on both the ADEOS-11 and Earth Observing System AM-1 platforms to be launched in 1999 possesses a 6.9 GHz channel. Aside from issues about interference from vegetation, the coarse resolution of these data will provide considerable challenges pertaining to their application. The resolution of TMI is about 45 km and that of AMSR is about 70 km. These resolutions are grossly inconsistent with the scale of soil moisture processes and the spatial variability of factors that control soil moisture. Scale disparities such as these are forcing us to rethink how we assimilate data of various scales in hydrologic models. Of particular interest is how to assimilate soil moisture data by reconciling the scale disparity between what we can expect from present and future remote sensing measurements of soil moisture and modeling soil moisture processes. It is because of this disparity between the resolution of space-based sensors and the scale of data needed for capturing the spatial variability of soil moisture and related properties that remote sensing of soil moisture has not met with more widespread success. Within a single footprint of current sensors at the wavelengths optimal for this application, in most cases there is enormous heterogeneity in soil moisture created by differences in landcover, soils and topography, as well as variability in antecedent precipitation. It is difficult to interpret the meaning of 'mean' soil moisture under such conditions and even more difficult to apply such a value. Because of the non-linear relationships between near-surface soil moisture and other variables of interest, such as surface energy fluxes and runoff, mean soil moisture has little applicability at such large scales. It is for these reasons that the use of remote sensing in conjunction with a hydrologic model appears to be of benefit in capturing the complete spatial and temporal structure of soil moisture. This paper is Part I of a four-part series describing a method for intermittently assimilating remotely-sensed soil moisture information to improve performance of a distributed land surface hydrology model. The method, summarized in section II, involves the following components, each of which is detailed in the indicated section of the paper or subsequent papers in this series: Forward radiative transfer model methods (section II and Part IV); Use of a Kalman filter to assimilate remotely-sensed soil moisture estimates with the model profile (section II and Part IV); Application of a soil hydrology model to capture the continuous evolution of the soil moisture profile within and below the root zone (section III); Statistical aggregation techniques (section IV and Part II); Disaggregation techniques using a neural network approach (section IV and Part III); and Maximum likelihood and Bayesian algorithms for inversely solving for the soil moisture profile in the upper few cm (Part IV).

Crosson, William L.↗

Monitoring tropical environments with Space Shuttle photography

Orbital photography from the Space Shuttle missions (1981-88) and earlier manned spaceflight programs (1962-1975) allows remote sensing time series to be constructed for observations of environmental change in selected portions of the global tropics. Particular topics and regions include deforestation, soil erosion, supersedimentation in streams, lacustrine, and estuarine environments, and desertification in the greater Amazon, tropical Africa and Madagascar, South and Southeast Asia, and the Indo-Pacific archipelagoes.

Helfert, Michael R.↗

Revisiting the Causes of the US Midwest Great Flood of 1993

The floods that occurred in the Midwest during the summer of 1993 remain one of the greatest flooding events in US history. While a considerable amount of work has already been done addressing its causes there still remain uncertainties as to the relative roles of forcing from the tropics and the extra-tropics as well as the extended nature of the excessive rainfall that lasted throughout much of the late spring and summer of that year. Here we use a novel “replay” technique in which the GEOS AGCM is constrained to remain close to the MERRA-2 reanalysis over specified regions of the globe to isolate the causes of the excessive rain. We show the main rainfall event in the upper Midwest in July (extending into August) was the result of the development of a large amplitude Rossby wave (and associated pronounced moisture influx from the Gulf of Mexico) apparently forced by anomalous transient eddies in the western North Pacific. Rainfall that fell in the Midwest during the two months prior to that, while not as intense, acted to precondition the soil, with forcing from the tropics contributing to the May precipitation, while the excessive Midwest rain that fell during June was part of a record hemispheric-wide precipitation signal that appears to be linked to an unusually cold north polar stratosphere. The nature of the stratospheric impact and the possible delayed influence of the Pinatubo eruption is currently being assessed.

Midwest↗

Environmental drivers of spatial variation in tropical forest canopy height: Insights from NASA’s GEDI spaceborne LiDAR

Forest canopy height is a fundamental ecosystem property—influencing patterns of forest carbon storage and forest ecosystem responses to climate variability and change. Previous studies have analyzed environmental drivers influencing spatial variation in canopy height at landscape-to-regional scales; however, far less is known about the environmental determinants underlying regional and global scale variation in forest canopy height. Using the canopy height metrics products from Global Ecosystem Dynamics Investigation (GEDI), a space-borne Light Detection and Ranging (LiDAR) instrument specifically designed to characterize forest structure, we analyze the environmental correlates of spatial variation of global tropical forest canopy height. Our study demonstrates that climate, topography, and soil properties account for 75% of the variation in tropical forest canopy height. Elevation, dry season length, and solar radiation are the most important drivers in determining canopy height both locally and regionally. These results emphasize the vulnerability of tropical forest structure to ongoing changes in the earth’s climate and provide a valuable empirical baseline for tropical forest management.

Science & Technology - Other Topics↗