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At least 1,261 records · Page 70

The Evolution of the Peridynamics Co-Authorship Network

We report peridynamics is a relatively new field in continuum mechanics that has developed over the past 20 years. This paper studies the evolution of collaborations in the field of peridynamics since its inception using social network analysis. For this purpose, we construct a network for each year from 2000 to 2019 describing co-authorship between scientists in peridynamics. In these networks, each node represents a scientist and each link connects two co-authoring scientists with a link weight representing the frequency and strength of their collaboration; each network as a whole can be thought of as a graph representation of the peridynamics community for the given year. By constructing a network for each year, we are able to analyze the evolution of the network in time and discuss the implications of this evolution for the peridynamics community. Our study demonstrates that the peridynamics community has been growing exponentially in size in recent years. Centrality metrics are also used to identify the most collaborative scientists in the community. Moreover, we compute link recommendations based on both elevating a scientist’s position in the network with respect to certain centrality metrics or closing structural holes in the network identified with persistent homology. We further extend the analysis to higher-order networks whose nodes represent groups of scientists in the community and whose links connect collaborating groups. In some sense, our work studies the past, present, and future of the peridynamics community.

97 MATHEMATICS AND COMPUTING↗

SimCCS: An open-source tool for optimizing CO 2 capture, transport, and storage infrastructure

Commercial-scale carbon capture and storage (CCS) technology will involve deploying infrastructure on a massive and costly scale. This effort will require careful and comprehensive planning to ensure that capture locations, storage sites, and the dedicated CO 2 distribution pipelines are selected in a robust and cost-effective manner. Presented in 2009, SimCCS is an optimization model for integrated system design that enables researchers, stakeholders, and policy makers to design CCS infrastructure networks. SimCCS 2.0 is a complete, ground-up redesign that is now a portable software package, useable and shareable by the CCS research, industrial, policy, and public communities. SimCCS 2.0 integrates multiple new capabilities including a refined optimization model, novel candidate network generation techniques, and optional integration with high-performance computing platforms. Accessing user-provided CO 2 source, sink, and transportation data, SimCCS 2.0 creates candidate transportation routes and formalizes an optimization problem that determines the most cost-effective CCS system design. This optimization problem is further solved either through a high-performance computing interface, or through third-party software on a local desktop computing platform. Finally, SimCCS 2.0 employs an open-access geographic information system framework to enable analysis and visualization capabilities. SimCCS 2.0 is written in Java and is publicly available via GitHub to encourage collaboration, modification, and community development.

42 ENGINEERING↗

Traceable and Scalable Food Balance Sheets from Agricultural Commodity Supply and Utilization Accounts (2010–2022)

Abstract The Food Balance Sheets (FBS), compiled by the Food and Agriculture Organization (FAO), serve as a cornerstone dataset for studies on agricultural development, food security, and dietary health, providing a broad overview of global and regional food systems. However, its limited transparency and scalability hinder its application in empirical analysis and multisector dynamic modeling. Here, we present a traceable Food Balance Sheets (T-FBS) dataset, developed from detailed Supply Utilization Accounts (SUA) using a novel Primary Commodity equivalent (PCe) aggregation approach. This framework enables the aggregation of commodity flows along supply chains while ensuring consistency and balance across multiple dimensions. The T-FBS dataset includes 57 PCe commodities across 195 regions for the period 2010–2022, consolidated from over 500 SUA products. While T-FBS closely aligns with FAO-FBS at aggregate levels for dietary energy and macronutrients, it identifies key uncertainties in other elements (e.g., feed, trade, stocks). By enhancing methodological transparency, traceability, and scalability, T-FBS strengthens the robustness of food system studies and fosters future research and collaboration within the open-source community.

agriculture↗

Big Data Analytics for Scanning Transmission Electron Microscopy Ptychography

Electron microscopy is undergoing a transition; from the model of producing only a few micrographs, through the current state where many images and spectra can be digitally recorded, to a new mode where very large volumes of data (movies, ptychographic and multi-dimensional series) can be rapidly obtained. In this paper, we discuss the application of so-called “big-data” methods to high dimensional microscopy data, using unsupervised multivariate statistical techniques, in order to explore salient image features in a specific example of BiFeO 3 domains. Remarkably, k-means clustering reveals domain differentiation despite the fact that the algorithm is purely statistical in nature and does not require any prior information regarding the material, any coexisting phases, or any differentiating structures. While this is a somewhat trivial case, this example signifies the extraction of useful physical and structural information without any prior bias regarding the sample or the instrumental modality. Further interpretation of these types of results may still require human intervention. Finally, however, the open nature of this algorithm and its wide availability, enable broad collaborations and exploratory work necessary to enable efficient data analysis in electron microscopy.

36 MATERIALS SCIENCE↗

Motivations for early high-profile FRIB experiments

This white paper is the result of a collaboration by many of those that attended a workshop at the facility for rare isotope beams (FRIB), organized by the FRIB Theory Alliance (FRIB-TA), on ‘Theoretical Justifications and Motivations for Early High-Profile FRIB Experiments’. It covers a wide range of topics related to the science that will be explored at FRIB. After a brief introduction, the sections address: section 2: Overview of theoretical methods, section 3: Experimental capabilities, section 4: Structure, section 5: Near-threshold Physics, section 6: Reaction mechanisms, section 7: Nuclear equations of state, section 8: Nuclear astrophysics, section 9: Fundamental symmetries, and section 10: Experimental design and uncertainty quantification.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

TH-A-207B-00: Shear-Wave Imaging and a QIBA US Biomarker Update

Imaging of tissue elastic properties is a relatively new and powerful approach to one of the oldest and most important diagnostic tools. Imaging of shear wave speed with ultrasound is has been added to most high-end ultrasound systems. Understanding this exciting imaging mode aiding its most effective use in medicine can be a rewarding effort for medical physicists and other medical imaging and treatment professionals. Assuring consistent, quantitative measurements across the many ultrasound systems in a typical imaging department will constitute a major step toward realizing the great potential of this technique and other quantitative imaging. This session will target these two goals with two presentations. A. Basics and Current Implementations of Ultrasound Imaging of Shear Wave Speed and Elasticity - Shigao Chen, Ph.D. Learning objectives-To understand: Introduction: Importance of tissue elasticity measurement Strain vs. shear wave elastography (SWE), beneficial features of SWE The link between shear wave speed and material properties, influence of viscosity Generation of shear waves External vibration (Fibroscan) ultrasound radiation force Point push Supersonic push (Aixplorer) Comb push (GE Logiq E9) Detection of shear waves Motion detection from pulse-echo ultrasound Importance of frame rate for shear wave imaging Plane wave imaging detection How to achieve high effective frame rate using line-by-line scanners Shear wave speed calculation Time to peak Random sample consensus (RANSAC) Cross correlation Sources of bias and variation in SWE Tissue viscosity Transducer compression or internal pressure of organ Reflection of shear waves at boundaries B. Elasticity Imaging System Biomarker Qualification and User Testing of Systems – Brian Garra, M.D. Learning objectives-To understand: Goals Review the need for quantitative medical imaging Provide examples of quantitative imaging biomarkers Acquaint the participant with the purpose of the RSNA Quantitative Imaging Biomarker Alliance and the need for such an organization Review the QIBA process for creating a quantitative biomarker Summarize steps needed to verify adherence of site, operators, and imaging systems to a QIBA profile Underlying Premise and Assumptions Objective, quantifiable results are needed to enhance the value of diagnostic imaging in clinical practice Reasons for quantification Evidence based medicine requires objective, not subjective observer data Computerized decision support tools (eg CAD) generally require quantitative input. Quantitative, reproducible measures are more easily used to develop personalized molecular medical diagnostic and treatment systems What is quantitative imaging? Definition from Imaging Metrology Workshop The Quantitative Imaging Biomarker Alliance Formation 2008 Mission Structure Example Imaging Biomarkers Being Explored Biomarker Selection Groundwork Draft Protocol for imaging and data evaluation QIBA Profile Drafting Equipment and Site Validation Technical Clinical Site and Equipment QA and Compliance Checking Ultrasound Elasticity Estimation Biomarker US Elasticity Estimation Background Current Status and Problems Biomarker Selection-process and outcome US SWS for Liver Fibrosis Biomarker Work Groundwork Literature search and analysis results Phase I phantom testing-Elastic phantoms Phase II phantom testing-Viscoelastic phantoms Digital Simulated Data Protocol and Profile Drafting Protocol: based on UPICT and existing literature and standards bodies protocols Profile-Current claims, Manufacturer specific appendices What comes after the profile Profile Validation Technical validation Clinical validation QA and Compliance Possible approaches Site Operator testing Site protocol re-evaluation Imaging system Manufacturer testing and attestation User acceptance testing and periodic QA Phantom Tests Digital Phantom Based Testing Standard QA Testing Remediation Schemes Profile Evolution Towards additional applications Towards higher accuracy and precision Supported in part by NIH contract HHSN268201300071C from NIBIB. Collaboration with GE Global Research, no personal support.; S. Chen, Some technologies described in this presentation have been licensed. Mayo Clinic and Dr. Chen have financial interests these technologies.

60 APPLIED LIFE SCIENCES↗

2013 Building America Research Planning Meeting Summary

The Building America Research Planning Meeting was held October 28-30, 2013, in Washington, DC. This meeting provides one opportunity each year for the research teams, national laboratories and Department of Energy (DOE) managers to meet in person to share the most pertinent information and collaboration updates. This report documents the presentations, highlights key program updates, and outlines next steps for the program.

32 ENERGY CONSERVATION, CONSUMPTION, AND UTILIZATI↗

Determination and Refinement of the Crystal Structure of Proteins Block Allocation Group at Brookhaven National Laboratory

Students and teachers from across Long Island (Eastport South Manor HS, Northport HS, Bayshore HS, Connetquot HS, Pendleton Hauppauge HS, William Floyd HS, Shelter Island HS) are collaborating on the crystallization, generation of putative ligands, and elucidation of protein structures at the NSLS II at BNL as part of the SPARK program.

59 BASIC BIOLOGICAL SCIENCES↗

Collaborative Research: Understanding Sheaths and Presheaths in Magnetized and Unmagnetized Plasmas

The common states of matter on Earth are solids, liquids and gases. Putting energy into gases can result in the 4th state of matter known as plasma, which consists of electrically charged particles (electrons and ions, both positive and negative) and neutral atoms and molecules. While uncommon on the Earth, plasma makes up more than 99% of the visible matter in the universe. Where plasma comes in contact with material boundaries, a thin region near the plasma boundary usually forms to isolate the plasma from the boundary. This thin region is called the plasma sheath. Experiments performed under aimed at improving our understanding of plasma sheaths and associated phenomena as fundamental to understanding all bounded plasmas. Plasma studied in this work are similar to those used in plasma applications such as the etching of semiconducting materials to make computer chips, in plasma space propulsion satellite engines, and used in experimental plasma fusion devices. The majority of experimental studies were carried out at the University of Wisconsin-Madison in close collaboration with Dr. Severn at the University of San Diego (USD), where most of diagnostic development for laser-induced fluorescence (LIF) measurements were carried out. USD is primarily an undergraduate institution. The award made possible outreach activities that promoted engagement of undergraduate students with diverse backgrounds in science, technology, engineering and mathematics (STEM) disciplines.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Swab Testing Results Summary

Swabs Tested: 1. FAST Spiral NP Swab, designed and supplied by Abiogenix, printed from polyamide 11 (Nylon) using HP Multi Jet Fusion printers. 2. NP Swab designed by USF Health and Northwell Health in collaboration with Formlabs. Printed at LLNL using the Form 3B stereolithography printer in Formlabs Surgical Guide resin.

42 ENGINEERING↗

26th International Symposium on Plant Lipids

The 2024 International Symposium on Plant Lipids (ISPL) successfully advanced scientific knowledge in plant lipid biology by presenting new discoveries in lipid metabolism, membrane structure and function, lipid signaling, and biotechnology. The symposium fostered professional development for early-career scientists through oral and poster presentation opportunities, lightning talks, and networking events. It promoted the exchange of new technologies, including advances in mass spectrometry, metabolic modeling, and synthetic biology, that will accelerate research across plant biology and related fields. ISPL also strengthened international collaborations, drawing 220 participants from 15 countries across four continents, and established a platform for ongoing scientific exchange and community-building within the global plant lipid research community.

59 BASIC BIOLOGICAL SCIENCES↗

AWAKEN

The American WAKE experimeNt (AWAKEN) is a landmark collaborative international wake observation and validation campaign. Wake interactions are among the least understood and most impactful physical interactions in wind plants today, leading to unexpected power losses and increased operations and maintenance costs. The AWAKEN campaign is designed to gather observational data to address the most pressing science questions about wind turbine wake interactions and aerodynamics and to further understand wake behavior and validate wind plant models. Simultaneously, the AWAKEN campaign will also focus on testing of wind farm control strategies that have been shown to increase wind plant power production. Leveraging the expertise and resources of a large body of National Laboratories, academic institutions, and industry partners will lead to improved wind farm layout with greater power production and improved reliability, ultimately leading to lower wind energy costs.

17 WIND ENERGY↗

Comprehensive Genetic Characterization of Four Novel HIV-1 Circulating Recombinant Forms (CRF129_56G, CRF130_A1B, CRF131_A1B, and CRF138_cpx): Insights from Molecular Epidemiology in Cyprus

Molecular investigations of the HIV-1 pol region (2253–5250 in the HXB2 genome) were conducted on sequences obtained from 331 individuals infected with HIV-1 in Cyprus between 2017 and 2021. This study unveiled four distinct HIV-1 putative transmission clusters, encompassing 19 previously unidentified HIV-1 recombinants. These recombinants, each comprising eight, three, four, and four sequences, respectively, did not align with previously established Circulating Recombinant Forms (CRFs). To characterize these novel HIV-1 recombinants, near-full-length genome sequences were successfully obtained for 16 of the 19 recombinants (790–8795 in the HXB2 genome) using an in-house-developed RT-PCR assay. Phylogenetic analyses, employing MEGAX and Cluster-Picker, along with confirmatory neighbor-joining tree analyses of subregions, were conducted to identify distinct clusters and determine subtypes. The uniqueness of the HIV-1 recombinants was evident in their exclusive clustering within generated maximum likelihood trees. Recombination analyses highlighted the distinct chimeric nature of these recombinants, with consistent mosaic patterns observed across all sequences within each of the four putative transmission clusters. Conclusive genetic characterization identified four novel HIV-1 CRFs: CRF129_56G, CRF130_A1B, CRF131_A1B, and CRF138_cpx. CRF129_56G exhibited two recombination breakpoints and three fragments of subtypes CRF56_cpx and G. Both CRF130_A1B and CRF131_A1B featured seven recombination breakpoints and eight fragments of subtypes A1 and B. CRF138_cpx displayed five recombination breakpoints and six fragments of subtypes CRF22_01A1 and F2, along with an unclassified fragment. Additional BLAST analyses identified a Unique Recombinant Form (URF) of CRF138_cpx with three additional recombination sites, involving subtype F2, a fragment of unknown subtype origin, and CRF138_cpx. Post-identification, all putative transmission clusters remained active, with CRF130_A1B, CRF131_A1B, and CRF138_cpx clusters exhibiting further growth. Furthermore, international connections were identified through BLAST analyses, linking one sequence from the USA to the CRF130_A1B strain, and three sequences from Belgium and Cameroon to the CRF138_cpx strain. This study contributes valuable insights into the dynamic landscape of HIV-1 diversity and transmission patterns, emphasizing the need for ongoing molecular surveillance and global collaboration in tracking emerging viral variants.

60 APPLIED LIFE SCIENCES↗

The 2019 Edition of the ICSBEP Handbook

Over the past several decades, innumerable experiments have been performed worldwide to support criticality safety. These experiments represent significant investment in infrastructure, expertise, and cost, and are valuable resources of data for present and future research. These valuable assets provide the basis for recording, development, and validation of methods and nuclear data [1]. If the experimental data are lost, the high cost to repeat many of these measurements would likely be prohibitive. The International Criticality Safety Benchmark Evaluation Project (ICSBEP) was established to: 1. Identify a comprehensive set of critical benchmark data and, to the extent possible, verify the data; 2. Evaluate the data and quantify overall uncertainties through various types of sensitivity analyses; 3. Compile the data into a standardized format; 4. Perform calculations of each experiment with standard criticality safety codes; and 5. Formally document the work into a single source of verified benchmark critical data. Annually, contributors from around the world continue to collaborate in the evaluation and review of select benchmark experiments for inclusion in the International Handbook of Evaluated Criticality Safety Benchmark Experiments (ICSBEP Handbook) [2]. Further information regarding the ICSBEP, including highlighted criticality safety benchmark evaluations, can be found in the September and October 2003 editions of Nuclear Science and Engineering [3]. New and recently revised evaluations have been prepared for inclusion in the 2019 edition of the ICSBEP Handbook.

21 SPECIFIC NUCLEAR REACTORS AND ASSOCIATED PLANTS↗

R and D activities on VHTR materials at KAERI - 18496

KAERI started VHTR materials R and D in 2006 as part of its role in supporting the development of key technology for the nuclear research and development program. Over the past ten years, research has been conducted on various materials including Alloy 617 for an IHX and hot gas duct, 9Cr-1Mo for an RPV, graphite for a reflector and the support structures in the core region, Cf/C and SiCf/SiC composites for a control rod, and Fe-Si, SiC, Hastelloy{sup R}, and other novel metals for an SI process reactor. Mechanical properties including creep and fatigue, environmental effects, and irradiation behaviors have also been heavily evaluated as part of the materials research. Most of the results have been contributed to the GEN-IV VHTR materials collaboration. (authors)

21 SPECIFIC NUCLEAR REACTORS AND ASSOCIATED PLANTS↗

Addressing Critical Problems in Materials Science Through Multiscale and Multimode Characterization (Project 1); Characterization and Optimization of Novel Triple-Conducting Oxide Materials for Energy Applications (Project 2) (CRADA Final Report)

PROJECT 1: Address critical problems in materials science and simultaneously advance the state-of-the-art in multiscale and multimode characterization using the combined advanced analytical capabilities and expertise of Colorado School of Mines (CSM) and the National Renewable Energy Laboratory (NREL). The primary effort of the Phase I of this CRADA is to establish the International Center for Multiscale Characterization using shared resources at both NREL and CSM. Phase II will focus on capability development and marketing, choosing candidate materials science issues in the areas of structure imaging, chemical composition mapping, and correlating properties and performance of materials for impact in energy-related, environmental and critical materials areas. The CRADA will be modified to include specific topics of concern in materials science to industry member partners. Advanced analytical capabilities and expertise at CSM and NREL will be used to advance materials understanding and performance through characterization of multiscale phenomena including structural imaging, chemical composition mapping, and other techniques correlating properties and performance of materials. PROJECT 2: As part of the International Center for Materials Characterization, work under Modification #1 will be led by Colorado School of Mines (CSM), working in collaboration with NREL staff to mentor and advise CSM postdoctoral researchers on set up of diffusion annealing experiments. The purpose of the modification is to provide for NREL staff to mentor and advise CSM postdoctoral researchers on set up of diffusion annealing experiments, including mentoring and advising the CSM-NREL team on proper Secondary Ion Mass Spectrometry (SIMS) data analysis as needed. SIMS measurements of 10-20 samples will be performed at NREL during the project duration.

08 HYDROGEN↗

The Journal of Open Source Software (JOSS): Bringing Open-Source Software Practices to the Scholarly Publishing Community for Authors, Reviewers, Editors, and Publishers

Open-source software (OSS) is a critical component of open science, but contributions to the OSS ecosystem are systematically undervalued in the current academic system. The Journal of Open Source Software (JOSS) contributes to addressing this by providing a venue (that is itself free, diamond open access, and all open-source, built in a layered structure using widely available elements/services of the scholarly publishing ecosystem) for publishing OSS, run in the style of OSS itself. A particularly distinctive element of JOSS is that it uses open peer review in a collaborative, iterative format, unlike most publishers. Additionally, all the components of the process—from the reviews to the papers to the software that is the subject of the papers to the software that the journal runs—are open. We describe JOSS’s history and its peer review process using an editorial bot, and we present statistics gathered from JOSS’s public review history on GitHub showing an increasing number of peer reviewed papers each year. We discuss the new JOSSCast and use it as a data source to understand reasons why interviewed authors decided to publish in JOSS. JOSS’s process differs significantly from traditional journals, which has impeded JOSS’s inclusion in indexing services such as Web of Science. In turn, this discourages researchers within certain academic systems, such as Italy’s, which emphasize the importance of Web of Science and/or Scopus indexing for grant applications and promotions. JOSS is a fully diamond open-access journal with a cost of around US$\$$5 per paper for the 401 papers published in 2023. The scalability of running JOSS with volunteers and financing JOSS with grants and donations is discussed.

96 KNOWLEDGE MANAGEMENT AND PRESERVATION↗